Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0554200 | OGI:04082860 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:27732744-27735793 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTCCCGCGCCGCGACGTCCAGGTCACACAGGTTCTTTGGAACGGGAAAGGGAGCAAAAGGCCGAATCTTTTCCGCTGTTGCTGCTCCTCCTTTCTCGCTCTCGCTCTGTCCGATCGGAGCCATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTGTAAGTGCTTTCCAAGAACCAAACTCTTGATTGTTCGCAGCGTTGGCTTCAAGCTTTTCTTGACTGATTTTCTTCTTGATTTCTTGTTTATGCGGTGGTTTGATAAGATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAATGAATACTCTGTTCTTCTTCTCGCTCTGAGCTGATGCTGCTGTGAGCATGTGATGCGTTTGGAGGAAAGGGTGACGGATTTTCGTTCTGCAAAACTGACAATCCGTAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGGTGAGGTTTGCTTGATTTGCTCTACATGATTACACTATTACAGTGCTTAATTAGTTAATTTGCTCGACTTGCCGATCGGTCTGTTGTGTTCATGTCGTTACTGAAATTGTGAAATCGGTGTAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGGTAAGTTCTTGTAGCAATCTTCATGGATATCTGATATCTCTAGCCGGGGCTTACCAAAATTTAGAGCTGATGGTGTTGTGGTTTCTAGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTAAGTAATATCATGCATTGATGTTTATTCGGTGCTACAGAGAAAACAATATCATACATGTTTCCTTCTCAGGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTCATCTGCTGAGGTAACCATTTGCTCGGTTAAAGTTTTTTTAGTCACTAAGATGAGTGATGCATAGTCTTGTTGGTTGCATTGTCATAATGGCATCCGGGTTTTACATTTTTTAAAAAATATTGAGTGTACTCTGATGCTTTTTCTATAGTAAAAATGCACATTGCACACGAGCCGATGTCCGATTTTAAAAGAAAACAAAAATTTCAGGTTCATCACAATCACATGTTAGCTAATGTAATACTAAAAATTTTCATGTCAAAGTTATCTCTAACGTGTTTTACCTAACAACCTTGTGATGCTTCTCCTGCAGAATGAGACTCTTGATGTCATTATCAAAAGTTTAGTAGTCAACTTCTTTCTTCAGTTTGTTTTGTCTGGGTAGATAAGTGACCTTGTTTGGTACCATGCCATTGTCAGTACAGCAGTATGATACCTAAAACAAAGAACCTGTATGTTATAATTCAGTGTATTGTCTTGTTTGGTTGGTTGAGACAATACTATTTAGCGGGTTATACTCAGAATTTTTTTGCAGTAAACTGACGCTTTAATCTATCAGTTTGCTCTGCCTTGCTCATATTGCATTTGCGTGTGGCTGTTCAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGTAAGATTTCAGTACCTTTTTCCTGTATGTTACGCTCTTTGAATAGCCTGCCATTTCAGCGTTGGATTCTACTGCAGTACCTGCTTCTAAATCGTTTTCTTGAAACAATGTTTATATCTTGAAGGAAATAGTGATAATACTTAACTTTTTCACCCTGATTATGCCTGAGGCAACAATATTGTTAAACTGAATATGTTTGCACTAAAAAGCTGGATTGAACTCTGCAAAAATGACACGTACTCAATCAAATCTATTGGTAGTTTGGTACAAAGCGAATTATTTTTGAGTGACATAAAACCACCGAATCTGGATATCTTTATTGGATAAATATGTACAAAGGAGCTTTTGACTCCAGGAAACTGTTGAATAGCAGCATTGGTTAATCAATGAGGATATGGGATGCATTGGCGTTTGGTGATAGATAGGTGATCTTTTAATGAGCCCTAGTCCTTTAGTTTCCATGAAGGGAACATTTGCGTTACTGAGCTACAGTAGTCGACAAACTGGAGTAGGAATAATGCTATTCCTGTTTGTATCTTCTCATCTGAAATAATGATGCACCGGTAGTGGTAGGTATATAAGGACAGAATAAATTCTTTAAGAAACATGACTGAAATTGGCTTGGCATTTTCTATCTCTCGAGTTAAATGTTACCAGAACTACAATTTCAGTTACAGGCTTTTGCTAATTATGAGTTATTATGCCCTCAATATTGATGAACAACCTCAGTGTACAACTTGTAAATTCTAACACCTGATTATCACAACTGCAACACACTTTTTTTAAAACGACTGCTTAGACAAGTATTAGTTGTATTTTTTTGTCAAACGTCTGAACATTTAAATTTAATATTGCTTCAGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAGTCATATGTTTACGCAAAAAGGATCTCTGTTTATTTCCACCAAGCTAACGCACCATCTCCGCTATCTATAATACTGTCACAGGCAATAGAGTAGTAGTGTACGCATAGAAAATATTCAATAGGTTGTACATTTTCAGATAGAAGACGAGCTATTTGCATTTTATTCATGTAAATTGTATAGCATAATTGAAGTACTTGTGATCTGTAATGCCGTGATAGATAGAGAAAACAAAGTTTTACT
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| CDS seq | ATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTCATCTGCTGAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAG
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| Protein seq | MSNTLLRVHPSELKIPYEYKRKRSCCMQLTNKTNQYVAFKVKTTNPRKYSVRHACGILPPRSSCDITVTMQAPVEMLSDYHCKDKFLVQSVAVGYGATMRDFVPELFTKAPGRVIEEFKLRVVYVAANPPSPVPEEEEEEEEDASPQSEVMSHGVKMTSVFDAVTVSTLTDRSADKVSSAEGVSVESMLVAEREYPVEENQKLQQQMELLRAARSSQQGFSAMFVLLVFMSSVCIGHFMKQIKV |
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| Function | Vesicle-associated protein 1-3 [UniProtKB/Swiss-Prot:Q84WW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0554200 | Os04t0554200-01 | Chr04 | 27732744 | 27735793 | + | irgsp1_rep | ||
| CDS seq | ATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTAAGTAATATCATGCATTGA
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| Protein seq | MSNTLLRVHPSELKIPYEYKRKRSCCMQLTNKTNQYVAFKVKTTNPRKYSVRHACGILPPRSSCDITVTMQAPVEMLSDYHCKDKFLVQSVAVGYGATMRDFVPELFTKAPGRVIEEFKLRVVYVAANPPSPVPEEEEEEEEDASPQSEVMSHGVKMTSVFDAVTVSNIMH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0554200 | Os04t0554200-02 | Chr04 | 27732827 | 27735793 | + | irgsp1_rep | ||
| CDS seq | ATGAGTAATACGCTGCTTCGTGTGCACCCTTCCGAGCTCAAGATCCCCTATGAGTACAAGAGGAAGAGGTCTTGCTGCATGCAGCTGACGAACAAGACCAACCAGTACGTGGCGTTCAAGGTGAAAACGACGAACCCAAGGAAGTACTCTGTGCGGCACGCCTGCGGTATACTGCCGCCCCGGAGCTCGTGCGATATCACAGTTACAATGCAGGCTCCCGTTGAAATGCTATCCGATTACCACTGCAAGGACAAGTTCCTCGTGCAGAGCGTGGCGGTTGGATATGGGGCGACCATGAGAGACTTTGTCCCTGAATTGTTTACTAAAGCGCCAGGCAGGGTGATCGAGGAGTTCAAGCTGCGGGTGGTGTATGTTGCTGCTAATCCTCCCTCTCCAGTGCCTGAGGAGGAAGAGGAAGAGGAAGAGGATGCATCCCCTCAGTCAGAGGTCATGAGCCATGGAGTGAAAATGACATCAGTGTTTGATGCTGTAACTGTATCCACACTCACCGATAGGTCAGCAGACAAAGTTTCATCTGCTGAGGGTGTCTCTGTAGAATCAATGCTGGTTGCAGAGAGAGAATATCCAGTAGAAGAAAATCAGAAGCTTCAGCAACAGATGGAACTACTTAGGGCAGCAAGATCATCTCAACAGGGCTTCTCAGCAATGTTTGTGCTGCTAGTTTTCATGTCATCTGTCTGCATTGGGCACTTCATGAAGCAGATCAAGGTTTAG
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| Protein seq | MSNTLLRVHPSELKIPYEYKRKRSCCMQLTNKTNQYVAFKVKTTNPRKYSVRHACGILPPRSSCDITVTMQAPVEMLSDYHCKDKFLVQSVAVGYGATMRDFVPELFTKAPGRVIEEFKLRVVYVAANPPSPVPEEEEEEEEDASPQSEVMSHGVKMTSVFDAVTVSTLTDRSADKVSSAEGVSVESMLVAEREYPVEENQKLQQQMELLRAARSSQQGFSAMFVLLVFMSSVCIGHFMKQIKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0554200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0661900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022370 | RBH | 0.0 | 5.606645 | 1.538885 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023110 | RBH | 0.0 | 5.460969 | 0.878902 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022840 | RBH | 0.0 | 14.976593 | 1.501282 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022590 | RBH | 0.0 | 0.128519 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022730 | RBH | 0.0 | 5.783570 | 1.831187 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0436600 | RBH | 10.414602 | 2.027991 | 0.2103375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021570 | RBH | 0.077840 | 0.714398 | 0.099151 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0438200 | RBH | 10.0658325 | 0.073958 | 0.713671 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022070 | RBH | 0.067080 | 0.098388 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021900 | RBH | 0.0 | 2.446181 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021990 | RBH | 0.0 | 5.112742 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022410 | RBH | 0.0 | 0.632268 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022600 | RBH | 0.0 | 7.101693 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021820 | RBH | 0.0 | 0.720183 | 0.106635 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021740 | RBH | 0.0 | 12.332877 | 0.000000 |
