Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0545600 | OGI:04081810 | 9/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:27333724-27335203 | ||||||||
| Gene Symbol | UCL15, OsUCL15 | ||||||||||
| DNA seq | AAAAGATTTTATTGCCTCCAAGAAACAACAAGATACAAGAATTCGGTACCATATAATTAAGCGAACACTCCACAAAGATTATTTGAGAAACACACTACACTACGTAGTTGTCTCATAATACAAAACTAAAAATGATATGCAGCTCAGACACACACAAGGAACAGCACTGCCTCTTTCCAAGCGGCCATACGATCAGCCTATCACAGCAAGGCCCCCACGGCGGCGAAGAACAGCAGCCACGTGGCAGTGCGCGGGGCCCAGCTGCCAGTGGCGCCGCCCGTGGCCGACGAGGTCCTGGTCGTCGTCGTCGTCGTCGGGTCCGCGTCGGACGACGACGGCTTCGCCAGCCTCGTGCCGCCGGCGGCGCTGCCGGAGAGGGTGGCGACCGTCACGGTGAGCTTCATGCCGGCGCCGCAGTGGCCCGTGCTGCCGCAGATGAAGTAGCGGGTGCCCGACCTGGTTAGCGTGACGATGGTCGTCCCGTCCTTGTACGACCGCAGCGGGTTCGCCGCCGAGCACGAGGTGTGGTCCGCCTCGCTCACCTCCACCACCGAGTGCCCCGCGCTGGTGTACTGGAACACTGCCACCACGCCACGTGTACGACCACACGAGAGTTAGCCACTGAACAATGGGACCCACTCGTGTACAATATATACTTCTTTCATCCGAAAGTTTAATATGTATTTCTTTGCTATCGAAATCAACAATAAATTAACTCATCCACCATATGAAGAAAACCAAAAAACTACTCCCTCTGTCCCAAATTATAAAGCTTTTAGTTTTTTTTACACGGTTTTCAATAACATAGTTTGATCATTATTTTATTTCATTTTATGTTCTCAACAAATATGAAATTAATATTATATGAAAGTACTTCAAAATATTAATCTGGTGACATAACACGTATGATGATATAATTAGTATGATTATTAGTCAAAAGCTACCGAGTTTAATTTTTCTTAAAAAGGGACGTCCTATAATTTGGGACAGAGGGAGTATATTTATACAAACAACCAATGTATTAAAATAATTCTTTGGGTTTCAGTTAATAATTTAATTTAGCACGTAAACACTATCAATGTATATATCCATCTTATCTAAAAGAAATAATAAAAGTGTATATATTTTAGACTTTATAGCGTTGTAATAGAATAAGTCTAATCCCATCTAGACTTTATAGCGTTGTACTAGAAGGATTACGTGATAACTGAATATATTAGGCCTTTCACTTACATAGCGTATCGCCGATGTTGAACGTCTTGCCTCTGGCCCAGGCGGTGTAGTCCACACCGGTAGTCCACCCCGACGAGTCGCCGACGGTGTAGTCTTTCGCAGACGCCGGCGCCGCGGCGGCGGCGAGGAGAACGGCCACGAGCACGCCGGGGAGAAGGCCGGCCATCTGGCGAGACGTACCTGTATGTTTTTGCATGGAGAGAGACGATGACGATGACCGGCTAATGGCCGCGACTGCAGGATATAT
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| CDS seq | ATGCAAAAACATACAGGTACGTCTCGCCAGATGGCCGGCCTTCTCCCCGGCGTGCTCGTGGCCGTTCTCCTCGCCGCCGCCGCGGCGCCGGCGTCTGCGAAAGACTACACCGTCGGCGACTCGTCGGGGTGGACTACCGGTGTGGACTACACCGCCTGGGCCAGAGGCAAGACGTTCAACATCGGCGATACGCTATTGTTCCAGTACACCAGCGCGGGGCACTCGGTGGTGGAGGTGAGCGAGGCGGACCACACCTCGTGCTCGGCGGCGAACCCGCTGCGGTCGTACAAGGACGGGACGACCATCGTCACGCTAACCAGGTCGGGCACCCGCTACTTCATCTGCGGCAGCACGGGCCACTGCGGCGCCGGCATGAAGCTCACCGTGACGGTCGCCACCCTCTCCGGCAGCGCCGCCGGCGGCACGAGGCTGGCGAAGCCGTCGTCGTCCGACGCGGACCCGACGACGACGACGACGACCAGGACCTCGTCGGCCACGGGCGGCGCCACTGGCAGCTGGGCCCCGCGCACTGCCACGTGGCTGCTGTTCTTCGCCGCCGTGGGGGCCTTGCTGTGA
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| Protein seq | MQKHTGTSRQMAGLLPGVLVAVLLAAAAAPASAKDYTVGDSSGWTTGVDYTAWARGKTFNIGDTLLFQYTSAGHSVVEVSEADHTSCSAANPLRSYKDGTTIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAKPSSSDADPTTTTTTRTSSATGGATGSWAPRTATWLLFFAAVGALL |
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| Function | Uclacyanin 1 [UniProtKB/Swiss-Prot:O82081] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0545600 | Os04t0545600-01 | Chr04 | 27333724 | 27335203 | - | irgsp1_rep | ||
| CDS seq | ATGCAAAAACATACAGGTACGTCTCGCCAGATGGCCGGCCTTCTCCCCGGCGTGCTCGTGGCCGTTCTCCTCGCCGCCGCCGCGGCGCCGGCGTCTGCGAAAGACTACACCGTCGGCGACTCGTCGGGGTGGACTACCGGTGTGGACTACACCGCCTGGGCCAGAGGCAAGACGTTCAACATCGGCGATACGCTATTGTTCCAGTACACCAGCGCGGGGCACTCGGTGGTGGAGGTGAGCGAGGCGGACCACACCTCGTGCTCGGCGGCGAACCCGCTGCGGTCGTACAAGGACGGGACGACCATCGTCACGCTAACCAGGTCGGGCACCCGCTACTTCATCTGCGGCAGCACGGGCCACTGCGGCGCCGGCATGAAGCTCACCGTGACGGTCGCCACCCTCTCCGGCAGCGCCGCCGGCGGCACGAGGCTGGCGAAGCCGTCGTCGTCCGACGCGGACCCGACGACGACGACGACGACCAGGACCTCGTCGGCCACGGGCGGCGCCACTGGCAGCTGGGCCCCGCGCACTGCCACGTGGCTGCTGTTCTTCGCCGCCGTGGGGGCCTTGCTGTGA
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| Protein seq | MQKHTGTSRQMAGLLPGVLVAVLLAAAAAPASAKDYTVGDSSGWTTGVDYTAWARGKTFNIGDTLLFQYTSAGHSVVEVSEADHTSCSAANPLRSYKDGTTIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAKPSSSDADPTTTTTTRTSSATGGATGSWAPRTATWLLFFAAVGALL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0545600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46130 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0653200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021860 | RBH | 0.0 | 2.345072 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022600 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022320 | SBH | 0.0 | 1.992371 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022070 | RBH | 0.063519 | 0.074516 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022250 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0430600 | RBH | 14.7013145 | 0.148751 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021070 | RBH | 0.0 | 0.095591 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0431000 | RBH | 13.021541 | 0.0189755 | 0.0348885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021480 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021890 | SBH | 0.0 | 0.213340 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022070 | SBH | 0.0 | 0.669522 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021320 | SBH | 0.0 | 0.0 | 0.165793 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021240 | SBH | 0.0 | 0.0 | 0.0 |
