Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0537800 | OGI:04080790 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:26900944-26903966 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGTGCTCCCCACCACCTTCTCTTCGCTCTCGCGACAGGGACTCGGAAAAAAGCATTCGCCGCTTTGCTTCGACCCAGCCAAGCCTGGGCGTTGCGTAGCGCGCTTCAAGCCAGCAGCTAGCTAGCGCGAGAGCCGTCAGTTCAGTCATGCATCAGCTCGACCGGCTTTGCTACGCCGTCGTCGTGCTCGTCGTGATCGGCGCGACGGTCGCCGAGGCGGCCACCGGCACGTTCATCTACGCCGGGTGCTCGCCGTCCAAGTACCAGCCGGGCACGCCGTTCGAGGGCAACCTCAACTCGCTCCTCGCCTCCATCGCCAACGCGGCGCCCAACGGCGGGTACAACAGCTTCACGGCCGGGAGCAACGGCACCGGGGACGGCGCGGCGGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGGGCAACGCCGACTGCGCGGCGTGCGTGCGGGACGCCGTGGGGCAGCTCAACGAGGTGTGCGCCGCCGCGTACGCGGCGTCGCTGCAGCTGGAGGGGTGCTACGTGCGCTACGACAGCAGCAACTTCGTCGGCCAGCCCGACAACGCCATGGTGTACCGCAAGTGCAGCACCAGCACCAGCGGCGACGGCGACTTCCTCAAGAACCGGGACGCCGTCCTCGCCGCGCTCCAGGGCGGCCTCGCCAACGGGTACAAGGTGAGCAGCTCCGGCAACGTGCAGGGTGTGTCGCAGTGCCTCGGCGACCTCGCCGCCGGCGACTGCACGACGTGCCTTGCGCAGGCGGTCGGCCAGCTCAAGGGCACCTGCGGCACGTCGCTGGCCGCCGACGTGTACCTCGCGCAGTGCTACGTCAGGTACTGGGCCAACGGCTTCTACTTCCGCCCGTCACAAGGTACGCCCAATAGTGCAACACGAATAAGAATTTTTCAGCCTTGCGTTTCAGAGAGCAAGAACCCGAACCAATTCTCCAGCAACCTATCCTGATCAAGTGATCAAGCTTACCATTTGCAAGTTGCCAATTGTCCTAAGCTATCTCGGTTAGATGGTGTAAGTTTAACCGTGTAAAGTACAGTATGGAGAGTCCTTAGCTGAGCAAGTTGTGACGGGAATTGATTCCGATGGGCAATGGGTAAACTTACCAAAGTTGATAGAGAGATAAGGTAGAATGGGTAAACTACATATAGTTAAATTTATTTAGCCACCTATGGCTATCGATCAAATTGCTCAGCTTGCTCAGCTAAGGACGAGAGCAATCACTTGATTGAAGGCAGCCACGCTACTGACAAACCAAAATTTAGCTTGCTGGCTATAGACTACTGCCTGTAAGCCAACAACCCCCCATAACTTACAGACTTATATCTAAGTTACAGTGTCAGTGTCATATATGCAGGAAGCTCCAACGACACAGTTCAGTCATTTTCCTGCAATAAAGAAAAGAGTAAATTTCACAAAACTACACGTTTTATAGTCTAAGTTGCAGAAAACCACACACATTTTGACACTTGGCACTTAAGTACATATATTTTGGTAGTGTAGTTTTACAAAACCACACTATCAATGAATGGATTCACCCGCGAGATGACGTGACTGTTTCACCTAAGACGAGGACATGTCATCTTCGAGTGTGGAACAACCACGTCCTCATCCTAGATGGAACAACCACATCATCTCACAGGTGAATTCATTCATCGATAGTGTGATTTTGTGAAATTAAACTACTAAAATATATGTACTTAAGTGCCAAGTGTCAAAATATGTGTGGTTTTCTGTAACTTGAACCATAAAACACATGTTGTTTTGTAAAATTTACTCTAATAAAATTTGCACGGCTAATCACCTCGGCTTTTCTGGTGGACTGCATGCAAATGACAGTATCATTAGACTCACTTTGGTGGGACATCAGCATTAATCAGAATACCAGATGATCAAGTGGCAGTAACAAAAGGGGCTATTCTTTCCGATCCTAGAAAAAGGAAGAGTAATAAAGATGATTCTAGTACTGAAAAGTTGATGTCAAGGGACAGTAACAAACTAACAATGCAAATTATTCTCTCTGATCCAACAGAGCTGACTTGTTAAATATCCTGAGATTCGTATTTCCTTCAACGTCTCTTGTGCAGGGATGCAAAGAGCTTCCTACAGGACAGTGCTTAAACCGTAAGCTAGATAATTGTCCACTGCTTTTCTTGTACTGGATATACCGATTAGAAAGGGGTTCTCTGACCCAGTGATGGCCACTAAACAAAATTCCAATCAATCTAAGCATATCAAATTTATTTAGGACGGCGAGCGGCGGCTGATAAGCTTAGCTTAGCGCCTTAGCCACTCAACCACTTCCCATGCTGAATATATTCGCGATAAACAAAACGGAAAGGGGCACTCTGCAAGTGACTCTGCTTTTTGTAGTCCTGTACATATGTGCCGTGCTACTCTAATCTCTGTCTGATTTCCTTTGGATTCTGGTGATAATAGTAGGCTTTGTGCTGCAGATTATTCGCAAGATGACGTCGGGCGGACTGTGGCAATAATCGTAGGCATCTTGGCAGGGCTGGCGATCCTCGTGGTGTTCATCTCTTTCCTTAGAAAATCATGTAAGCCCCTTGACTTGGAAATCCTCTCTGTTTTGTTGTCTTTGGAGAGACCACTACTAGATCATAAATTAGTAGGAGAATCTCTGTATCTGCTCCTCTGGCACGTTATCTTTCATTCCATATGCAAGCTTCACTAACCTGATATAAACATGATGTATCACTCTAAACTGCAGGCTAGCTTCGTTTGATGTCTGGAAGGAGTTTCAGTTTCAGTCCTCGCATTCTGTGTGAGAAACTGAGAATGACTTGTAAAGAGAGCTTCGCTTGCATGACGTTGGCAAGAGCTTCATATCGCTTGTAATATCATTTTTCCAGCAATAGATATGTAAGCGAGATCTTGGTAGGGCTATCGGAGCAGCACTACCTTACTTTGGGTCATCGTTTTTTCGTCCACTAATAATTGGCCTACTTGTTTATTATCAAGTCTGAAGACAACATCATGCACATATTTGG
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| CDS seq | ATGCATCAGCTCGACCGGCTTTGCTACGCCGTCGTCGTGCTCGTCGTGATCGGCGCGACGGTCGCCGAGGCGGCCACCGGCACGTTCATCTACGCCGGGTGCTCGCCGTCCAAGTACCAGCCGGGCACGCCGTTCGAGGGCAACCTCAACTCGCTCCTCGCCTCCATCGCCAACGCGGCGCCCAACGGCGGGTACAACAGCTTCACGGCCGGGAGCAACGGCACCGGGGACGGCGCGGCGGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGGGCAACGCCGACTGCGCGGCGTGCGTGCGGGACGCCGTGGGGCAGCTCAACGAGGTGTGCGCCGCCGCGTACGCGGCGTCGCTGCAGCTGGAGGGGTGCTACGTGCGCTACGACAGCAGCAACTTCGTCGGCCAGCCCGACAACGCCATGGTGTACCGCAAGTGCAGCACCAGCACCAGCGGCGACGGCGACTTCCTCAAGAACCGGGACGCCGTCCTCGCCGCGCTCCAGGGCGGCCTCGCCAACGGGTACAAGGTGAGCAGCTCCGGCAACGTGCAGGGTGTGTCGCAGTGCCTCGGCGACCTCGCCGCCGGCGACTGCACGACGTGCCTTGCGCAGGCGGTCGGCCAGCTCAAGGGCACCTGCGGCACGTCGCTGGCCGCCGACGTGTACCTCGCGCAGTGCTACGTCAGGTACTGGGCCAACGGCTTCTACTTCCGCCCGTCACAAGATTATTCGCAAGATGACGTCGGGCGGACTGTGGCAATAATCGTAGGCATCTTGGCAGGGCTGGCGATCCTCGTGGTGTTCATCTCTTTCCTTAGAAAATCATGCTAG
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| Protein seq | MHQLDRLCYAVVVLVVIGATVAEAATGTFIYAGCSPSKYQPGTPFEGNLNSLLASIANAAPNGGYNSFTAGSNGTGDGAAAYGLYQCRGDLGNADCAACVRDAVGQLNEVCAAAYAASLQLEGCYVRYDSSNFVGQPDNAMVYRKCSTSTSGDGDFLKNRDAVLAALQGGLANGYKVSSSGNVQGVSQCLGDLAAGDCTTCLAQAVGQLKGTCGTSLAADVYLAQCYVRYWANGFYFRPSQDYSQDDVGRTVAIIVGILAGLAILVVFISFLRKSC |
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| Function | Plasmodesmata-located protein 8 [UniProtKB/Swiss-Prot:Q6NKQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0537800 | Os04t0537800-01 | Chr04 | 26900944 | 26903966 | + | irgsp1_rep | ||
| CDS seq | ATGCATCAGCTCGACCGGCTTTGCTACGCCGTCGTCGTGCTCGTCGTGATCGGCGCGACGGTCGCCGAGGCGGCCACCGGCACGTTCATCTACGCCGGGTGCTCGCCGTCCAAGTACCAGCCGGGCACGCCGTTCGAGGGCAACCTCAACTCGCTCCTCGCCTCCATCGCCAACGCGGCGCCCAACGGCGGGTACAACAGCTTCACGGCCGGGAGCAACGGCACCGGGGACGGCGCGGCGGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGGGCAACGCCGACTGCGCGGCGTGCGTGCGGGACGCCGTGGGGCAGCTCAACGAGGTGTGCGCCGCCGCGTACGCGGCGTCGCTGCAGCTGGAGGGGTGCTACGTGCGCTACGACAGCAGCAACTTCGTCGGCCAGCCCGACAACGCCATGGTGTACCGCAAGTGCAGCACCAGCACCAGCGGCGACGGCGACTTCCTCAAGAACCGGGACGCCGTCCTCGCCGCGCTCCAGGGCGGCCTCGCCAACGGGTACAAGGTGAGCAGCTCCGGCAACGTGCAGGGTGTGTCGCAGTGCCTCGGCGACCTCGCCGCCGGCGACTGCACGACGTGCCTTGCGCAGGCGGTCGGCCAGCTCAAGGGCACCTGCGGCACGTCGCTGGCCGCCGACGTGTACCTCGCGCAGTGCTACGTCAGGTACTGGGCCAACGGCTTCTACTTCCGCCCGTCACAAGATTATTCGCAAGATGACGTCGGGCGGACTGTGGCAATAATCGTAGGCATCTTGGCAGGGCTGGCGATCCTCGTGGTGTTCATCTCTTTCCTTAGAAAATCATGCTAG
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| Protein seq | MHQLDRLCYAVVVLVVIGATVAEAATGTFIYAGCSPSKYQPGTPFEGNLNSLLASIANAAPNGGYNSFTAGSNGTGDGAAAYGLYQCRGDLGNADCAACVRDAVGQLNEVCAAAYAASLQLEGCYVRYDSSNFVGQPDNAMVYRKCSTSTSGDGDFLKNRDAVLAALQGGLANGYKVSSSGNVQGVSQCLGDLAAGDCTTCLAQAVGQLKGTCGTSLAADVYLAQCYVRYWANGFYFRPSQDYSQDDVGRTVAIIVGILAGLAILVVFISFLRKSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0537800 | RBH | 0.752937 | 1.445732 | 0.827731 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45460 | RBH | 0.428862 | 0.665935 | 0.330780 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0643900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021310 | RBH | 0.000000 | 8.462649 | 3.307453 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022060 | RBH | 0.000000 | 1.063178 | 2.311338 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021780 | RBH | 0.872092 | 8.637762 | 4.145245 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021530 | RBH | 0.140607 | 0.022500 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021710 | RBH | 1.468600 | 0.000000 | 7.179065 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0424000 | RBH | 3.207903 | 12.3762675 | 6.094791 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020520 | RBH | 0.095655 | 0.079287 | 0.721603 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0424100 | RBH | 4.139902 | 10.110024 | 2.5240795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021020 | RBH | 0.163116 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020860 | RBH | 0.449922 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020930 | RBH | 3.832649 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021350 | RBH | 0.185788 | 0.786983 | 1.351576 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021530 | RBH | 0.196375 | 7.419116 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020790 | RBH | 0.178667 | 0.438202 | 1.235051 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020710 | RBH | 0.000000 | 8.793247 | 4.039657 |
