Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0519700 | OGI:04078320 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:26013363-26016187 | ||||||||
| Gene Symbol | ARF10, OsARF10 | ||||||||||
| DNA seq | TGGAAACCACCTCATTAGTCATCCCATCGAGTTGGGTTGAGAGATGCTCACCTTCATGGAGCTCGCGGGGCCGACGGAAGGCGACGGCGGCGGGTCCGTGGACTCCCAGCTGTGGGCGGCGTGCGCGGGGAGCATGTCGTCGGTGCCGCCCGTGGGCGCGGCGGTGTACTACTTCCCGCAGGGCCACGCGGAGCAGGCGAGCGCGGCCGTGGACCTGTCGTCCGCGCGCGTCCCGCCGCTCGTGCCGTGCCGGGTTGTCGCCGTGCGGTTCATGGCCGACGCGGAGAGCGACGAGGTCTTCGCCAAGATACGCCTCGTCCCGCTACGCCCCGGCGACGCGGTGGTGGACGTGGGCGAGGCGGCCGCGGCCGAGGCGCGGCGGGAGGAGGAGAATAGTAGGCCGAGGCCGACGTCGTTCGCCAAGACGCTGACGCAGTCCGACGCGAACAACGGCGGGGGGTTCTCCGTGCCGCGGTTCTGCGCCGAGACCATCTTCCCGGAGCTGGACTACAGCAGCGAGCCGCCCGTGCAGTCCGTCTGCGCCAAGGACGTGCACGGTGTGGAGTGGACGTTCCGGCACATCTACCGGGGCACCCCGCGCCGGCACCTGCTCACCACGGGGTGGAGTCCCTTCGTCAACAAGAAGCAGCTCACGGCCGGCGACTCCATCGTGTTCATGCGTGACGAGGGCGGGAACATCCACGTCGGGCTCCGCCGCGCTAAACGCGGGTTCTGCAGCATCGGCGGCGACGACGAGAGCCTCTCCTCGATTCCCGGGTGGGACCAGTACAGGGGCTTGATGCGGCGCAATGCGACCGCGACCGCGACCGGTGGGAGAACCCCGCCCAAGGGGAAGGTCCCGCCGGAGAACGTGCTCACGGCGGCGACGAGGGCCACCACCGGGCAGCCGTTCGAGGTGCTGTACTACCCGCGGGCGAGCACGCCCGAGTTCTGCGTGAGGGCGGCCGCGGTCAGGACGGCCATGGCCGTGCAGTGGTGCCCCGGCATGCGGTTCAAGATGGCGTTCGAGACAGAGGACTCGTCGCGGATCAGCTGGTTCATGGGCACTGTCGCCGGCGTCCAGGCCTCCGACCCCGTCCGTTGGCCGCAGTCGCCATGGCGTCTCCTTCAGGTACACCTACACGGCACCAACATGAGACAACCCCAACTCGATCACGATAGAGTCGTAGAGTTCTTGATCAATTGGCCTCCTCGCAGGTGACCTGGGACGAGCCGGAGCTCCTACAGAACGTAAAGCGCGTGTGCCCGTGGCTGGTGGAGCTCGTGTCGAGCATGCCCAACCTCCACCTGCCATCCTTCTCGCCGCCGCGCAAGAAGCCGCGCAACCCGCCTTACGCGGAGCTCCCCCTCGAGGGCCAGATCTTCACCGGCCCGGTGTTCCCGCCCAATCCAATGGCGCACGACCACCACCACCACCATGGTTTCCCTTTCCTCCCCTTCCCGGACAGTAGTGCTCAACCTGCAGGCATACAGGGAGCCAGGCATGCGCAGTTCGCTTCACCGTTCCCGGAGTTCCACATCGGCAACCTGCAGCCGAATCTGATGCTCTACGCCGGCATCCGCCTCCCGCCCGCCGATCGCGCCGCCCCCGCTCCTCGCCCGCCGAGAATCATCATCAGCACCGACCTGACGATTGGCAGCCCGGGTAAACCCGACGACGCCGCGTGCTCTCCCTCATCCGGCGGCAAGAAGATCGACGACACCAAGCCGCGGGGGTTTCTCCTCTTTGGACAGGCAATTCTAACCGAGGAGCAGATCAAGAACGGCAACTCCGATGGTCGTCCGGCCTCGCCGAACTGGGACGCCGAGAAGGCGCCTAACACCTCGGAAGGCTCCGACTCCGGCGTCACCCAGGGCAGCCCCACCAAGAACACCACGCCGTCGTGGAGCCTACCGTATTTTGGAGGCAACAACATCAGCCGCGCATCCGAGTACGAGCTGAATCCCGGGCAGTGCAAGGTGTTCGTCGAGTCGGAAACCGTCGGCCGGAGCCTCGATCTCTCGGCGCTGAGCTCGTTCGAGGAGCTGTACGCCTGCCTGTCTGATATGTTCAGCATTGGCAGCGATGAACTGAGGAGCCATCTGGTGTACCGCAGCCCCGCCGGCGAAGTCAAGCACGCCGGCGACGAGCCATTCTGGTGAGCACACTAGCCGTTCGCCCGTTCCTCGTCAATACTAGTTGTATTTACCACTCGGTTATCAATTCTTGATCTGAAACTTAGCGACTTTTCTGTCATTTGCAGCGCGTTCGTGAAATCGGCGCGTAAGCTTAGGATACTGACAGATGCTGGCAGTGACAACCTGGGAGATTAGAAGAAGTAATAAATCAGCCGAATAACTTAGGGCGCTACTCCTAGTCTTTTAGAAGCAAAAATAAGCCGAGAGCTGCATGCACGTACAGCTGCATGAGCTGCGGTTTCTCCTTGCTCCAGTCCAGTCTAGAGATTTTTATTCAGGGTAAAGCTGATGCAGTCTTCAGTTAATTAGGTGTTTTTTAGTCCTTTTTACAGCTTTCTCGCTAGGGGTTTCAGGTAACAACTACTAGCGCAAAGTGCAGACAGAATGTAGTCTTTGCACCTTGGTCATCAAATCAAATGTACTGGTACTTCTTTTATTCTCATTCGGCGGATATTGAGCCTTAATTTGTTTCACGAAATTGAATGCTTCTGCCGCACCAGACCAAGGTGACAGGATTAGTGCAGGTGCAGGCTTACCTGTATGCAGTAATTACTATCTGCCGGAATATTTACTCGGCGCTGGCACTGCTGATTCTGAATTCTGTATAGAGGCTCTCAGCTCCAGGC
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| CDS seq | ATGCTCACCTTCATGGAGCTCGCGGGGCCGACGGAAGGCGACGGCGGCGGGTCCGTGGACTCCCAGCTGTGGGCGGCGTGCGCGGGGAGCATGTCGTCGGTGCCGCCCGTGGGCGCGGCGGTGTACTACTTCCCGCAGGGCCACGCGGAGCAGGCGAGCGCGGCCGTGGACCTGTCGTCCGCGCGCGTCCCGCCGCTCGTGCCGTGCCGGGTTGTCGCCGTGCGGTTCATGGCCGACGCGGAGAGCGACGAGGTCTTCGCCAAGATACGCCTCGTCCCGCTACGCCCCGGCGACGCGGTGGTGGACGTGGGCGAGGCGGCCGCGGCCGAGGCGCGGCGGGAGGAGGAGAATAGTAGGCCGAGGCCGACGTCGTTCGCCAAGACGCTGACGCAGTCCGACGCGAACAACGGCGGGGGGTTCTCCGTGCCGCGGTTCTGCGCCGAGACCATCTTCCCGGAGCTGGACTACAGCAGCGAGCCGCCCGTGCAGTCCGTCTGCGCCAAGGACGTGCACGGTGTGGAGTGGACGTTCCGGCACATCTACCGGGGCACCCCGCGCCGGCACCTGCTCACCACGGGGTGGAGTCCCTTCGTCAACAAGAAGCAGCTCACGGCCGGCGACTCCATCGTGTTCATGCGTGACGAGGGCGGGAACATCCACGTCGGGCTCCGCCGCGCTAAACGCGGGTTCTGCAGCATCGGCGGCGACGACGAGAGCCTCTCCTCGATTCCCGGGTGGGACCAGTACAGGGGCTTGATGCGGCGCAATGCGACCGCGACCGCGACCGGTGGGAGAACCCCGCCCAAGGGGAAGGTCCCGCCGGAGAACGTGCTCACGGCGGCGACGAGGGCCACCACCGGGCAGCCGTTCGAGGTGCTGTACTACCCGCGGGCGAGCACGCCCGAGTTCTGCGTGAGGGCGGCCGCGGTCAGGACGGCCATGGCCGTGCAGTGGTGCCCCGGCATGCGGTTCAAGATGGCGTTCGAGACAGAGGACTCGTCGCGGATCAGCTGGTTCATGGGCACTGTCGCCGGCGTCCAGGCCTCCGACCCCGTCCGTTGGCCGCAGTCGCCATGGCGTCTCCTTCAGGTACACCTACACGGCACCAACATGAGACAACCCCAACTCGATCACGATAGAGTCGTAGAGTTCTTGATCAATTGGCCTCCTCGCAGGTGA
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| Protein seq | MLTFMELAGPTEGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWFMGTVAGVQASDPVRWPQSPWRLLQVHLHGTNMRQPQLDHDRVVEFLINWPPRR |
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| Function | Auxin response factor 10 [UniProtKB/Swiss-Prot:Q7XKK6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0519700 | Os04t0519700-01 | Chr04 | 26013363 | 26016187 | + | irgsp1_rep | ||
| CDS seq | ATGCTCACCTTCATGGAGCTCGCGGGGCCGACGGAAGGCGACGGCGGCGGGTCCGTGGACTCCCAGCTGTGGGCGGCGTGCGCGGGGAGCATGTCGTCGGTGCCGCCCGTGGGCGCGGCGGTGTACTACTTCCCGCAGGGCCACGCGGAGCAGGCGAGCGCGGCCGTGGACCTGTCGTCCGCGCGCGTCCCGCCGCTCGTGCCGTGCCGGGTTGTCGCCGTGCGGTTCATGGCCGACGCGGAGAGCGACGAGGTCTTCGCCAAGATACGCCTCGTCCCGCTACGCCCCGGCGACGCGGTGGTGGACGTGGGCGAGGCGGCCGCGGCCGAGGCGCGGCGGGAGGAGGAGAATAGTAGGCCGAGGCCGACGTCGTTCGCCAAGACGCTGACGCAGTCCGACGCGAACAACGGCGGGGGGTTCTCCGTGCCGCGGTTCTGCGCCGAGACCATCTTCCCGGAGCTGGACTACAGCAGCGAGCCGCCCGTGCAGTCCGTCTGCGCCAAGGACGTGCACGGTGTGGAGTGGACGTTCCGGCACATCTACCGGGGCACCCCGCGCCGGCACCTGCTCACCACGGGGTGGAGTCCCTTCGTCAACAAGAAGCAGCTCACGGCCGGCGACTCCATCGTGTTCATGCGTGACGAGGGCGGGAACATCCACGTCGGGCTCCGCCGCGCTAAACGCGGGTTCTGCAGCATCGGCGGCGACGACGAGAGCCTCTCCTCGATTCCCGGGTGGGACCAGTACAGGGGCTTGATGCGGCGCAATGCGACCGCGACCGCGACCGGTGGGAGAACCCCGCCCAAGGGGAAGGTCCCGCCGGAGAACGTGCTCACGGCGGCGACGAGGGCCACCACCGGGCAGCCGTTCGAGGTGCTGTACTACCCGCGGGCGAGCACGCCCGAGTTCTGCGTGAGGGCGGCCGCGGTCAGGACGGCCATGGCCGTGCAGTGGTGCCCCGGCATGCGGTTCAAGATGGCGTTCGAGACAGAGGACTCGTCGCGGATCAGCTGGTTCATGGGCACTGTCGCCGGCGTCCAGGCCTCCGACCCCGTCCGTTGGCCGCAGTCGCCATGGCGTCTCCTTCAGGTACACCTACACGGCACCAACATGAGACAACCCCAACTCGATCACGATAGAGTCGTAGAGTTCTTGATCAATTGGCCTCCTCGCAGGTGA
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| Protein seq | MLTFMELAGPTEGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWFMGTVAGVQASDPVRWPQSPWRLLQVHLHGTNMRQPQLDHDRVVEFLINWPPRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0519700 | RBH | 0.086423 | 0.0 | 2.534726 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43910 | RBH | 0.064018 | 0.0 | 0.710400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0628600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020120 | RBH | 0.072152 | 4.696053 | 3.772184 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020900 | RBH | 0.0 | 0.407080 | 0.846988 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020620 | RBH | 0.0 | 10.034688 | 4.098321 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020350 | RBH | 0.0 | 0.156597 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020540 | RBH | 0.397583 | 5.176397 | 4.282750 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0406900 | RBH | 1.3119045 | 6.081757 | 0.267576 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019340 | RBH | 0.0 | 0.356206 | 0.201082 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0407700 | RBH | 1.7703225 | 2.6233725 | 2.3651425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019830 | RBH | 0.0 | 0.046148 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019690 | RBH | 0.000000 | 3.442123 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019800 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020170 | RBH | 0.140012 | 0.544004 | 0.261139 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020340 | RBH | 0.0 | 4.706710 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019610 | RBH | 0.000000 | 0.0 | 1.284111 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019560 | RBH | 0.179898 | 4.509017 | 3.869463 |
