Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0519100 | OGI:04042910 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:25976917-25978859 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTTAACTTGGTCGAATTTGACTGAGCAAAAGATTAAGTTTTGCTTCCATCTCAGATTGACTCCTCTTCATCTCCTCTCGGTCTTTAATCCTTGCCTGCTCAGATTCTTGCACTTTGTTTGACAAATCAGCCACCTGTGCACGAAGCTCAGCATTGGTCCTTTTCTCCGCTTCTAGTTCTGTCTCAGTGCTCTGCTCACTGAATCTAGGCTGGGCATTATGGAACCCCACATTCTTCAAGAACCGATTCTTCTTGGTGTTCTCAGCAAGCACATCAGCAACAACTTGAGCCGCTGACTTAAGTTCTTCACCTTCTGTTGTTGTAGATAGCTTGTTTTCCATCCGAGTCTAGCAAGAAAGTAGCAAACATGGTTGATGTTGAGAGAATTAAAAATAAGCACTACAAAGATCAAAGTCTGAAAATTATCTTACAATAGCCTCCTGTACAACAGGGGTGTAGCATTTTTTTTCTTGCTGTAGTGGAACTCCTTGAACAAATCAAATGCATTAGGTTCTTCATCATTGTATTTGTCATCCTGAGAACAACATATATGCATTAGGTCTAGCATGAATTAAGATGTTACGAAAATCTGGGCAGCTACTGTTCAATTGAGAATCTAAAAGAACATGTTCAACTAATTTCTAGCCTCATTTGTTGCACACAGTCACACTATGTTTTCCACTTAGACAAACAACTGCAACAGAGGTCTTTCACTGCATACACAGACATAAAAACAATAACTTTTAATCTATTAACACACTCAACTTAGACATAGATGGAAACCTAACTCATCACCTTTCACACAATGTATTGGCATCGGATCAGATATAGTGTCCTTGAACATTCCACAAACTAATGGACTCTCATGAACATAACAACATGAGCATGGACATCATCTTGTTTAGGCTGAGGCAGACGTATTTAAGCAGTAGCTTGTTCATACAAAAAATTATATGGTGCTTAAAATGGCCCACTTACCAAATTTTCAACATGAACCATGTAGGCACGAGATCCGGTTGTGTGATGGTACTTAACATTCCCTCGGTTTTCTTTGTTCTTTTGACACATCTCCTACATTAAAGACAACAATACATGTAAGGTTGGTGATAGATTAGCATGCACAAGGCATCAATCTGGTTTTGCAGAGAGAACATACCATCTTTTGGGGACTCTTCCATGATTCTAGGAGTTGAGTCCACTGTTCATTACTCATGAATTTGACAGGAGAAGTTTTTGTAACCAAATGTAGTGGAAAAGGATCAAAATATTTTTGCTTCAGCCTGTATCTTTGTTGGCGAACTGCGGACTTCATCATCTCAGTACAAGCCATTTTAACTGTATCATCCTCTATGTTTATGTCAAACTTGGCCTAATCGAATGGAAGAACATTTATAGAAAAGAATATCAATTCAGTAATTTATGGCTTAAAATAACAAACAATGGATCTTCTATTGAGACTAAATGTGGAAAGGACCAGAGAATGCATGTACCTTTAGTTTTCCTAAGAACAGATTAACGTACGCAGATGCAGGTTTTTCCTTGTATAGCTTCCAATGCGGGAGTATAGGCACATGGTTCCTAACTATGATGTTGCATTCAGTTGCAAACTTTGCAGCAACAAGAGGAACCACTGGCCTTATATTCCCTTCAGTTATGACAACTTGCAGCTTGCCACGGCACGCTCGGTTTAACCTTTGGAGACAACGTCCCATATTATTTCCCCGGTCCCTTCTCTCCACTCCCCCTAGTTGTAAATGTACATTGCAGTTGAAATTAAAACTAAAATTATTGAGGTGAAGCAAACATTGATCCAAGATGATCATGAATTGAAAGCTTTGCATACAAATATTGATCAACTGAGACAATATGAAATATGGAAAATAGATGAACAAACTCACCTTCGTTGGTAATCTGGTTGTGGTCACCGTGTTGAGTAATGCCAT
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| CDS seq | ATGGCATTACTCAACACGGTGACCACAACCAGATTACCAACGAAGGTGAGTTTGTTCATCTATTTTCCATATTTCATATTGTCTCAGTTGATCAATATTTGTATGCAAAGCTTTCAATTCATGATCATCTTGGATCAATGTTTGCTTCACCTCAATAATTTTAGTTTTAATTTCAACTGCAATGTACATTTACAACTAGGGGGAGTGGAGAGAAGGGACCGGGGAAATAATATGGGACGTTGTCTCCAAAGGTTAAACCGAGCGTGCCGTGGCAAGCTGCAAGTTGTCATAACTGAAGGGAATATAAGGCCAGTGGTTCCTCTTGTTGCTGCAAAGTTTGCAACTGAATGCAACATCATAGTTAGGAACCATGTGCCTATACTCCCGCATTGGAAGCTATACAAGGAAAAACCTGCATCTGCGTACGTTAATCTGTTCTTAGGAAAACTAAAGGCCAAGTTTGACATAAACATAGAGGATGATACAGTTAAAATGGCTTGTACTGAGATGATGAAGTCCGCAGTTCGCCAACAAAGATACAGGCTGAAGCAAAAATATTTTGATCCTTTTCCACTACATTTGGTTACAAAAACTTCTCCTGTCAAATTCATGAGTAATGAACAGTGGACTCAACTCCTAGAATCATGGAAGAGTCCCCAAAAGATGGAGATGTGTCAAAAGAACAAAGAAAACCGAGGGAATGTTAAGTACCATCACACAACCGGATCTCGTGCCTACATGGTTCATGTTGAAAATTTGGATGACAAATACAATGATGAAGAACCTAATGCATTTGATTTGTTCAAGGAGTTCCACTACAGCAAGAAAAAAAATGCTACACCCCTGTTGTACAGGAGGCTATTACTCGGATGGAAAACAAGCTATCTACAACAACAGAAGGTGAAGAACTTAAGTCAGCGGCTCAAGTTGTTGCTGATGTGCTTGCTGAGAACACCAAGAAGAATCGGTTCTTGA
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| Protein seq | MALLNTVTTTRLPTKVSLFIYFPYFILSQLINICMQSFQFMIILDQCLLHLNNFSFNFNCNVHLQLGGVERRDRGNNMGRCLQRLNRACRGKLQVVITEGNIRPVVPLVAAKFATECNIIVRNHVPILPHWKLYKEKPASAYVNLFLGKLKAKFDINIEDDTVKMACTEMMKSAVRQQRYRLKQKYFDPFPLHLVTKTSPVKFMSNEQWTQLLESWKSPQKMEMCQKNKENRGNVKYHHTTGSRAYMVHVENLDDKYNDEEPNAFDLFKEFHYSKKKNATPLLYRRLLLGWKTSYLQQQKVKNLSQRLKLLLMCLLRTPRRIGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0519100 | Os04t0519100-00 | Chr04 | 25976917 | 25978859 | - | irgsp1_rep | ||
| CDS seq | ATGGCATTACTCAACACGGTGACCACAACCAGATTACCAACGAAGGTGAGTTTGTTCATCTATTTTCCATATTTCATATTGTCTCAGTTGATCAATATTTGTATGCAAAGCTTTCAATTCATGATCATCTTGGATCAATGTTTGCTTCACCTCAATAATTTTAGTTTTAATTTCAACTGCAATGTACATTTACAACTAGGGGGAGTGGAGAGAAGGGACCGGGGAAATAATATGGGACGTTGTCTCCAAAGGTTAAACCGAGCGTGCCGTGGCAAGCTGCAAGTTGTCATAACTGAAGGGAATATAAGGCCAGTGGTTCCTCTTGTTGCTGCAAAGTTTGCAACTGAATGCAACATCATAGTTAGGAACCATGTGCCTATACTCCCGCATTGGAAGCTATACAAGGAAAAACCTGCATCTGCGTACGTTAATCTGTTCTTAGGAAAACTAAAGGCCAAGTTTGACATAAACATAGAGGATGATACAGTTAAAATGGCTTGTACTGAGATGATGAAGTCCGCAGTTCGCCAACAAAGATACAGGCTGAAGCAAAAATATTTTGATCCTTTTCCACTACATTTGGTTACAAAAACTTCTCCTGTCAAATTCATGAGTAATGAACAGTGGACTCAACTCCTAGAATCATGGAAGAGTCCCCAAAAGATGGAGATGTGTCAAAAGAACAAAGAAAACCGAGGGAATGTTAAGTACCATCACACAACCGGATCTCGTGCCTACATGGTTCATGTTGAAAATTTGGATGACAAATACAATGATGAAGAACCTAATGCATTTGATTTGTTCAAGGAGTTCCACTACAGCAAGAAAAAAAATGCTACACCCCTGTTGTACAGGAGGCTATTACTCGGATGGAAAACAAGCTATCTACAACAACAGAAGGTGAAGAACTTAAGTCAGCGGCTCAAGTTGTTGCTGATGTGCTTGCTGAGAACACCAAGAAGAATCGGTTCTTGA
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| Protein seq | MALLNTVTTTRLPTKVSLFIYFPYFILSQLINICMQSFQFMIILDQCLLHLNNFSFNFNCNVHLQLGGVERRDRGNNMGRCLQRLNRACRGKLQVVITEGNIRPVVPLVAAKFATECNIIVRNHVPILPHWKLYKEKPASAYVNLFLGKLKAKFDINIEDDTVKMACTEMMKSAVRQQRYRLKQKYFDPFPLHLVTKTSPVKFMSNEQWTQLLESWKSPQKMEMCQKNKENRGNVKYHHTTGSRAYMVHVENLDDKYNDEEPNAFDLFKEFHYSKKKNATPLLYRRLLLGWKTSYLQQQKVKNLSQRLKLLLMCLLRTPRRIGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0519100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0240600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026060 | SBH | 0.773919 | 8.581865 | 14.426943 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026850 | SBH | 0.413197 | 3.096853 | 3.241896 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026290 | SBH | 0.238974 | 0.301559 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026560 | SBH | 6.881021 | 15.412815 | 17.182211 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0406400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025330 | SBH | 0.548640 | 0.533333 | 1.741575 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025810 | SBH | 0.434930 | 0.245744 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025630 | SBH | 1.129336 | 16.029198 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025690 | SBH | 3.888289 | 13.927725 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026110 | SBH | 0.946613 | 0.945430 | 1.418750 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026270 | SBH | 1.099003 | 6.072578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025530 | SBH | 0.665406 | 9.837274 | 5.228647 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025420 | SBH | 4.591807 | 15.234076 | 8.449032 |
