Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0517600 | OGI:04078010 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:25873036-25878716 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGGTACAATAGTAAAGTACTGAGATAGATTAGGGGTAAATTTAACATCCCGGACGACGTCGGTTACGTCGTTGTGTTCGATCGTCAGTAGCGGCGGGCGGTGGAGACCATCTTGAGGGCGGAGCCGCCGATGGTGAAGGCTTTCTTGCGGACGGCCTTGTACTCTGGCCACGTGATGGCGTGGTAGGCGGCGCTCTGGCCGGGCGACACGGCGTCCGGCAACGGCGCCACCTTGACGTCCGGCAGGCGGGCCGAGGATGTATCCAAGCGATATCCTATCGCGGTCGCGGTTGACGACGGCGCGGTAGTAGATGCTGTGGAAGTGGCCGTTGGTGAGTATGCATGTGGAAGTTAGGTCGCTAATGTTGAGGACGAAGTCGCCCGGAACGATCGCCGGCACTGCCACCCACCGGTCTGGTCCTCGCCGGAATAGCTGTAGCCCTGGCACGATGCACGATCTGGAGCATAAGGCGGAGTCGGTGTGTGCGATGAGTCCCCGCGCTTGCCGTAGGTCCGGGCACCTCGGGTACCAGTGCATCGTCGCCGTCATCGTCTTGGCAATCCTCCTCTCCGCCTCAACGCCGGTGAGACCCAGCGCCCACCCTGAGGAACAACTCTAGCAGCTCGTCGGCTAGCCGCCGCATCTCCTTGTGGAACTCCATCACGTCACTGCGTATATTATACGTGCATCAGGACACTTATACGTGTACACGTAGTAGTAGACGAGTAGCTCGAGAGAGTGTGTGTGCATGGCGGCGAGCCGGCGACGGGTGTACGTGAGAATACTGTGAAAACTATTGAGGCAATCTACCTCTCGTGGAGGCTGTTCAAGTCATTATATACCAGAGCAGAGATACAACAATAGTACAACTCAAGACCGAATCGTATATTACTAACCTATACAGATTCTACATACACAAGGAAAACACCTATACAGCATCGGAAACGAATCAGTTATGCAGTAACGTAAGCAACCACATCTCTATGGTACAACACCCCCCCTCAATCATAACTTCGCACAAGTTAAGATTGTTCCTGAAAATTCGCAACTTGCTTAGAGATTGTGCCTTAGTGAAACCATCTGCTAATTGATCACCAGAAGATATAAACCGGATATCCAACAACCGTTGCACAACCCGTTCTCTAACAAAATGATAATCTACTTCGATGTGTTTAGTTCTGGCATGAAACACAGGGTTAGCAGAGAGATAAGTTGCACCAATATTGTCACACCAAAGTACTGCAGCCTTTGGTTGTGATACTCCAAGTTCCTTAAGCAAGGTTTGAATCCAAATGACTTCAGCAGTAGCATTAGCTAATGCCTTGTACTCTGCTTCTGTGCTAGAGCGGGAAACTGTAGCTTGTTTTCTTGCACTCCATGATATTAAATTGAAACCAAGGAAAATAGCAAAACCACCAGTTGAACGTCTATCATCTGAACATCCTGCCCAATCTGCATCTGAGAACGCACTAATAGTAGTGGAGTCTGATCTTCCAATTTTTAGACCAAATGTCAAAGTGCCACTAACATATCTCAAAACTCTCTTTACCGCCGTCCAGTGCAAAGTTGTTGGTGAGTGTAAATATTGACATGCTTTATTCACCGCAAAGGCTATGTCAGGACGAGTTAACGTTAAATATTGTAACCCACCAACAATACTCCTATACTTTGTACCATCTTCTTCACTCAACAGTACTCCACCTACCGATGAAAACTTTTCCGAAACAGCAAGTGGAGTACTTACCGGTTTGCAATTCCTTAACCCAGCTCTACTGATCAACTCAGTTGCATATTTCCTTTGTGACAGCACCAAACTTCCTTCAGATGACGGCGTTACTTCTATACACAAGAAGTAATGTAAATTACCAAGATCCTTAAGTGCAAACTCAGCATTAAGATCTTTAAGTAAAGCAGGAATAGCTTGATCACTTGAGCTAACCACAATGATATCATCCACGTAGACCAAGAAGTATATAACCACATCACCTTTCCTATAGAAAAACAATGAAGTGTCTGCCTTGGAAGCACTGAACCCAAGTTGGCATAATTTGTCATAGAGACGATAATACCATTGCTCTCACTGGACCCTGTCTCAAACCAAATAATGCTCTGACTAACTTGCCACACATAATATGAAGAAGACTTATCAACGTACCCAGGCGGTTGCTTCATATATACTTCCTCTTCCAAAATGCCATGAAGAAACGCATTCTTGACATCTAGTTGACGTATACTCCAACCTTTGGAGACCGCAAGAGACAGAACGAGACGAATAGTAGAGATCTTAACAACAGGACTAAAAGTATCCTCGTAATCAATGCCATACCTCTGCTTAAATCCTTTCGCCACCAACCGAGCTTTATACCGATCAATTGTACCATCAGATTTTCGCTTGATCTTAAACACCCACTTGCACATCAATAATATTTTTTCCTATCGGTGCAGGCACTAAATGCCAAGTATTATTTTGAATCAGTGCATTATATTCCTCATCCATGGCCTTCTTCCAATTTTCATCAGCTAGAGCATCATCGAAACAAGTAGGTTCCTTGTCAGAACCACTATACATACCCCATCTAATCGTTCCATCTGTACGAGTAAGTGGCTTACGAATATTACTTTGAAGCACGAGTATGCAGGCCGGGATCACCACAACAGGCTGAATGTTCTGTTGTTCACCTTGCTGCAGCCATAGAAGGTCCAGAATCCGCAGACAGATTCAAGAGATAAAGTCCTCAGTAGATCCAGACATCTCACCACCAGAAACGGACAATCCCGGCGTAGACTCACGAACCGGAACCTGCCGCACCACACACGTGTGACCCCAGGAGAACACAGTTTGGTGATGGAGGTGAACATACCGAAACATGCGACACTTGCGGTGACCCCAAACATCTGAAAAGACCAATGCCAGATACTTCTGGCATATGAGCAGAAGAAGCTGGACCAATGCCAGATAAACCACCACTATTTTGATCCAGATTATCATCACCAGAATCCTGTACGTACAGGCCAGCACTAGAAGCATTGTTAGGAGCATTAGTCTCAAAAGAAAAACTATTAATCATACCCCTTGATGATAACAAAGATTCTGGAAGAAGAGAAATTTCAGCTCGAAGTTGGTTTCCAGCATTGGAATGAAGATCAACAAAGGGAAAAACAGTTTCGTCAAATATAACATCTCTAGATATATAGACCCGGCCTGTGGAAATATCTAGACACTTATACCCTTTGTGATGAAAACTATACCCAAGGAAAGCACACTTTTTTGAACGAAATTGGAGCTTACGTTTGTTATAAGGACGAAGATTTGGCCAACAAGCACAACCGAAAACTCGAAGAAAGGAATAGTCAGGCTTAGTATGAAACAAAAGCTCCAAAGGGGTAGAAAAGTTAATAACTCGACTAGGTATACGGTTGATCAAATAGGTAGCTGTGAGAAAGGCCTCATCCCAAAATTTGAGAGGCATCGAAGCATGAGCAAGGAGAGCTAATCCTACTTCAACAATATGGCGATGTTTGCGTTCTGCAGAGCCGTTTTGTTGATGTGTATGAGGACAAGAGATATGATGTGCTATCCCTATTTTCTGGAAGAAAGAGTTTAGACGATGATATTCACCACCCCAGTCAGTCTGCATTGTAAGAATTTTCCTACCAAGTTGTCTTTCAACAAGATGCTGGAAATTAGTAAAAACTTGGAAAACTTCGGACTTGTTCTTTAAAAGATATATCCAAGTAAATTTACTATAATCATCAATAAAGCTTACATAATATTTGAATCTCCCCACGGACTGAGGAGCAGGACCCCAAACATCTGAAAAGACAAGCTCCAAAGGAGCAGACGACCGACTGACTGACCTAGAATAAGGTAGTTGATGACTCTTAGCTTGCTGACAAGCATCACAAACTCGCTCTTCCCTCGACTCACTAACAGGGATATTATGTTTTCTAAGAACTCTACTCACAACCGAAAAAGAAGGGTGACCAAGACGACTATGCCACCTAGACTCTGCAGAACTAGTAGAAACAAGAGCTTGACGTCCCTGAGGTGTAGTAGACTTCAAAGGAATTGGATACAGACCACCCCGGGATCTACCTTGAAGAAGAGTGCTCTTCGTTGTTTGATCCTTAACACAAAAGAATTTAGGATGAATTTCAACAAAGGCATGATTATCATAAGCAAGACGATGAGCTGAAACTAAATTCTTTTTAGCCTTAGGAATATAAAGAACATTATTAAGAGCGAGATTTCGATTAGGGGTATGAAAAATAGTCCTTCCTATGTGACTTATACTCATACCTGCGCTATTTGCAGCATGAACTTGCTCATTACCATGATACCTTTCCTTTGTCGTAAGTTTCTTAAGCTCCCCAGTAATATGATCTGTAGCGGCAGTATCCAAATACCAATTTGTATCTACCCCATAAGAAGATACGGCTGATGCCGACTTTGCTTGCTGATGGTGCTGCTGAAAGATTACATCGTTTCCAGAGAACGATCGATCAAAACGCTTCCAGCATGTATGCACTGTGTGACCTTCCTTCCCACACAATTGACAGGAAGGTCGAGAACCATCTCCACGGCCACGGCCACCACGGCCTCTGCCACCAAAACCACTACCGAAATTGCTGCCAAAACCACCTCGTCCACGGCCTCGACCTTGTCCTCGTCCACGTCCTCCTCGTGACGCGCTGTTAGCCGACGAGTGATAGCCTCCTTCAGATTGATTATTTAGATGTGCCTCAAACGAGAGTAGCTGGGCATATAGATCACTGAGTGATATGTAGTCCTTGGAGGAGACTGAGGCAACCAGAGGATTATAATCTGCGTCAAGTCCTCCAAGAATATATGAAACAATATCATCATCATCAAGTTTCTTCCCAGCTGCAGCCATCTCATCTGCTAATCCCTTCATCTTAGTGAAGTATGCAGCAGCCGATGAATCTCCCTTCAATTCTCGAGCCAATTGCGCACGAATCTGAATAATTCGCGCCTTAGATTGCGAGGAAAACATCTCGTTAAATTGCAGTCCAGACTTGTCTGGCACTCTCAAGATGTGCGACTTGCACCAGAACTTCTCGCGAAAGCGTCGAGAGTAAATACCCGAGTACTTGTTGATCATGCGCAATCCACTGTGAATAGGCTGGGTTGTTGACGGATTCCTTCACCAAATCGTCGCCCACCTTTTTCTCCACCGTGATCTCAGGTGATGGCACCTCTTTTGTGCCATCAAGATATCCAGTAAGCTGTGCTCCACGCACGGCCGGCAAAACCTGCGCTCTCCAAACCAGGAAGTTGTCTCTGGACAGCTTTTCAGAGACGGGATGTCCTAGCACTGCCGATGAAGACAAAGTCGACGAAGAACTTGATGCCATGACTAGATGTTTTGTGGAAGAGGATGCTCTGATACCATGTGAAAACTATTGAGGCAATCTACCTCTCGTGGAGGCTGTTCAAGTCATTATATACCAGACAGAGATACAACAATAGTACAACTCAAGACCGAATCGTATATTACTAACCTATACAGATTCTACATACACAAGGAAAACACCTATACAGCATCGGAAACGAATCAGTTATGCAGTAACGTAAGCAGCAGCATCTCTATTGTTTAACAAATACCAGAAGAGGAGGTAGTCGTCGCCGGACTAGGGCCAGAGACGGCGGAGCTTTT
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| CDS seq | AGTTGTTCCTCAGGGTGGGCGCTGGGTCTCACCGGCGTTGAGGCGGAGAGGAGGATTGCCAAGACGATGACGGCGACGATGCACTGGTACCCGAGGTGCCCGGACCTACGGCAAGCGCGGGGACTCATCGCACACACCGACTCCGCCTTATGCTCCAGATCGTGCATCGTGCCAGGGCTACAGCTATTCCGGCGAGGACCAGACCGGTGGGTGGCAGTGCCGGCGATCGTTCCGGGCGACTTCGTCCTCAACATTAGCGACCTAACTTCCACATGCATACTCACCAACGGCCACTTCCACAGCATCTACTACCGCGCCGTCGTCAACCGCGACCGCGATAGGATATCGCTTGGATACATCCTCGGCCCGCCTGCCGGACGTCAAGGTGGCGCCGTTGCCGGACGCCGTGTCGCCCGGCCAGAGCGCCGCCTACCACGCCATCACGTGGCCAGAGTACAAGGCCGTCCGCAAGAAAGCCTTCACCATCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGCCCGCCGCTACTGACGATCGAACACAACGACGTAACCGACGTCGTCCGGGATGTTAAATTTACCCCTAATCTATCTCAGTACTTTACTATTGTACCCTAA
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| Protein seq | SCSSGWALGLTGVEAERRIAKTMTATMHWYPRCPDLRQARGLIAHTDSALCSRSCIVPGLQLFRRGPDRWVAVPAIVPGDFVLNISDLTSTCILTNGHFHSIYYRAVVNRDRDRISLGYILGPPAGRQGGAVAGRRVARPERRLPRHHVARVQGRPQESLHHRRLRPQDGLHRPPLLTIEHNDVTDVVRDVKFTPNLSQYFTIVP |
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| Function | Gibberellin 3-beta-dioxygenase 2 [UniProtKB/Swiss-Prot:Q9FU53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0517600 | Os04t0517600-00 | Chr04 | 25873036 | 25878716 | - | irgsp1_rep | ||
| CDS seq | AGTTGTTCCTCAGGGTGGGCGCTGGGTCTCACCGGCGTTGAGGCGGAGAGGAGGATTGCCAAGACGATGACGGCGACGATGCACTGGTACCCGAGGTGCCCGGACCTACGGCAAGCGCGGGGACTCATCGCACACACCGACTCCGCCTTATGCTCCAGATCGTGCATCGTGCCAGGGCTACAGCTATTCCGGCGAGGACCAGACCGGTGGGTGGCAGTGCCGGCGATCGTTCCGGGCGACTTCGTCCTCAACATTAGCGACCTAACTTCCACATGCATACTCACCAACGGCCACTTCCACAGCATCTACTACCGCGCCGTCGTCAACCGCGACCGCGATAGGATATCGCTTGGATACATCCTCGGCCCGCCTGCCGGACGTCAAGGTGGCGCCGTTGCCGGACGCCGTGTCGCCCGGCCAGAGCGCCGCCTACCACGCCATCACGTGGCCAGAGTACAAGGCCGTCCGCAAGAAAGCCTTCACCATCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGCCCGCCGCTACTGACGATCGAACACAACGACGTAACCGACGTCGTCCGGGATGTTAAATTTACCCCTAATCTATCTCAGTACTTTACTATTGTACCCTAA
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| Protein seq | SCSSGWALGLTGVEAERRIAKTMTATMHWYPRCPDLRQARGLIAHTDSALCSRSCIVPGLQLFRRGPDRWVAVPAIVPGDFVLNISDLTSTCILTNGHFHSIYYRAVVNRDRDRISLGYILGPPAGRQGGAVAGRRVARPERRLPRHHVARVQGRPQESLHHRRLRPQDGLHRPPLLTIEHNDVTDVVRDVKFTPNLSQYFTIVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0517600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43720 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019990 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020490 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0404800 | RBH | 0 | 0.002074 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0537300 | SBH | 0.9541425 | 0.2059185 | 0.0702355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019550 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019480 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019450 | RBH | 0.000000 | 0.0 | 0.0 |
