Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0508500 | OGI:04076940 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:25405125-25407689 | ||||||||
| Gene Symbol | R2R3-MYB | ||||||||||
| DNA seq | GCATATAAATCTCTCTCTCTCCTTTGTTATACTATAGCTCTAGCTAGCTAGCAACAAGGGGAAAAGAACACATTAGTTAATCTCCCCTGATTAAAGAAGTGTGACCAATAATAGTACTATGGCTTTAACGTGTCATCGACTCAGGCCGTCGTTTGTGGAAGTGGACGTACGATCGATCCACGGATGATAAGTTTGCTGTCCCATCTTTATCCCACGAGCACGCCGCAGCTATGTCGTCTGTATGCACGTACTCGAGATCGCGACTACTCTTCTCTCATGGCGTCATGCAGACCGGGAAATTGATCTACCACAGCGTGCATGCTCCGGCGGCGCCGTCGAGGTTCCACAGGCTGCCCCAGGTGGCGCCGTCGTCCTCGCTGGAGCCGTAGTCCTCGCTGGTAGAGGCGCAGCAGCTGCCGCCGCCGTCGCTCAGCTGATGGCCGGCGACGGCGGCGCCGTGGAGGATGAGGTGGTAGGACATGGCGGGGCACATCATGAGGTCGTCCATCGCGTCCTGGTGCATGATCAAGTCCTCCGCCTCCCCGCCCCCCATCGACAAAGACGACGACGACGACGACGGCGCCACAGCCGCTGCGGCGCCGCCCGCGTCGTCGTCGGTGCGCGCGTCACCGGTCTCGGCAACGATGATGTCCTTGCTCTGCGGCGTCGGCGTCGGCATTAGCGTCGGCTGCTGCAGCTGCTGGCTCTGCTGCATCTCGCGGCGCTGCTTCAGGAACCTGGCCCTGGCGCGCTCGATGTTCTTGGACGGCTTGCCCTTCTTGAAGTGCGTCCTCCAGTAGTTCTTGATCTCGTTGTCCGTCCTGCCCGGGAGGCTACGCGCGATCGTCGACCACCTGCAGCATACCCACGCATATATGCAGGTTAATTCTCCTGCAGCTGTAGCTAATTAACCAGTAGCTAGCTAGCTAAGAGTGTAGCATCATCATTTGTGTGTTTACCTGTTGCCCCACAAGGCATGGAGCTGGACGATGATGCTCTCCTCCTGGGGAGTGATCTTGCCTCTCTTCAGATCAGGCCTCAGGTAGTTAACCCATCGTAGCCTGCAGCTCTTGCCGCTTCTCTTCAGACCTGCAGCAGCAACAAATAAAATTTAATTAGTAAATGGATCTCGGTATCACACTATGTCAAGAGAGCCACCTATGCGTATGCACCAGCACTACAGCATAGTTAAACTCGCCACCTAATGTCCTAACACATGTATGCACCACACATTAATTCATCTATATTTATATCGCCATCACATAGTAGTACTGATGCTTGGTTAATGCCAACTAAAATTTAAGCAGGAAAGCGCTGAGTACTTTTCATGCACTAACTAACTAACTCAAATGCTTTCGACAGTGTATATGTGCCTCTTCTAAATAAAAATATACTTTTAGTATTCCAATTAAGCAACTTAATTAACTCATCCAAAAAATATCAGGCAGCATTAGCAGTTTTAACTATACTGTTTCTACTCTCTTAGTCTCTTGTAGTATCTCTTACTCTCCTAAATCATATAATACGGTAATACCTCTTCTAAACGCCTTCTCTACAGCGATATTACATGTGTCTATGCATCGCAAGCCGGGGAACATATTGGTGCAAAGGAATTGAATTTCATAGGCGGAGCCAATCCAACTAGTCCTTCATAAAGTATATCACATCTTCCAGACTGAGGTCTGAACTCTGAACTTAAATGGAAGAGCAACAAGAACATGCATGGAGCCATGGAGTGGAGACTGGAGATCAAGATCAGTATGGTTCAGTTGAAGAAATCGAGTTCAGAAGACGAAACCGATAGATCCAGCTAGCTAACACGTCAGAATTTACTGGATAACATGTTTTGTACATGATCCAGTCATGCGGCTCAGTTGACATGCATGCAAAGTTGCCACTTGAAGATCTTAATTAACCACAAGTACTACAAGCTGCCTAAAGTGCAACAGGTTGACTGCCCCATGCAACTTGCAGGGCCAATCATTTGCAACTCACAAGTTGTACCTGGTCGCATGGTGAAAACTGAAAAGAGATCACTGGATCTATCGAATTTATAAGCCATCGGAAAAAGTAAAAAAGAGAAGGAAAAAAAAAAGGTAACGCGTGCAACTGAAGACTGTCAGTTCATGACTTGTACGACAACATGTCCATGGTTAATTCCACTGAATTACTCCTACCTGTAAGCTTGGAGACAGAATTCCACCGGCCTTCGCCGTGCTGCCTGACATGCTCGACGAGCAGCGCGTCCTCCTGGCTCGTCCACGGCCCTTTCCTCCACCCGCCGCCGTCCTGCTGCAGCTGCCTCCCCCACCCGGCAGCCGACTGCACTTCCGCCGCCGCCATTGCCGGCCTCTTCAGTCCAGCTACCTCTCTTCTTCAGTTCTTCTTTCACCAGCAGATCGAAGAAAATGAGCTTAATTGATGCGTATCTGTCTCTCTCCCCTCTGCCTGTTTTCTGGGAGATTTTTGTGCAGCTGGTAGGACACAGGCAGAGAGAGAGAGGCCGGGGGCCAAATTAAAGGCGAGCTAGATTAAGATAGCAGCTATAGCTATCTATGGCCGCGA
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| CDS seq | ATGGCGGCGGCGGAAGTGCAGTCGGCTGCCGGGTGGGGGAGGCAGCTGCAGCAGGACGGCGGCGGGTGGAGGAAAGGGCCGTGGACGAGCCAGGAGGACGCGCTGCTCGTCGAGCATGTCAGGCAGCACGGCGAAGGCCGGTGGAATTCTGTCTCCAAGCTTACAGGTCTGAAGAGAAGCGGCAAGAGCTGCAGGCTACGATGGGTTAACTACCTGAGGCCTGATCTGAAGAGAGGCAAGATCACTCCCCAGGAGGAGAGCATCATCGTCCAGCTCCATGCCTTGTGGGGCAACAGGTGGTCGACGATCGCGCGTAGCCTCCCGGGCAGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCCAGGGCCAGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGAGCCAGCAGCTGCAGCAGCCGACGCTAATGCCGACGCCGACGCCGCAGAGCAAGGACATCATCGTTGCCGAGACCGGTGACGCGCGCACCGACGACGACGCGGGCGGCGCCGCAGCGGCTGTGGCGCCGTCGTCGTCGTCGTCGTCTTTGTCGATGGGGGGCGGGGAGGCGGAGGACTTGATCATGCACCAGGACGCGATGGACGACCTCATGATGTGCCCCGCCATGTCCTACCACCTCATCCTCCACGGCGCCGCCGTCGCCGGCCATCAGCTGAGCGACGGCGGCGGCAGCTGCTGCGCCTCTACCAGCGAGGACTACGGCTCCAGCGAGGACGACGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGGCGCCGCCGGAGCATGCACGCTGTGGTAG
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| Protein seq | MAAAEVQSAAGWGRQLQQDGGGWRKGPWTSQEDALLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYLRPDLKRGKITPQEESIIVQLHALWGNRWSTIARSLPGRTDNEIKNYWRTHFKKGKPSKNIERARARFLKQRREMQQSQQLQQPTLMPTPTPQSKDIIVAETGDARTDDDAGGAAAAVAPSSSSSSLSMGGGEAEDLIMHQDAMDDLMMCPAMSYHLILHGAAVAGHQLSDGGGSCCASTSEDYGSSEDDGATWGSLWNLDGAAGACTLW |
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| Function | Transcription factor MYB62 [UniProtKB/Swiss-Prot:Q9C9G7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0508500 | Os04t0508500-01 | Chr04 | 25405125 | 25407689 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGCGGCGGAAGTGCAGTCGGCTGCCGGGTGGGGGAGGCAGCTGCAGCAGGACGGCGGCGGGTGGAGGAAAGGGCCGTGGACGAGCCAGGAGGACGCGCTGCTCGTCGAGCATGTCAGGCAGCACGGCGAAGGCCGGTGGAATTCTGTCTCCAAGCTTACAGGTCTGAAGAGAAGCGGCAAGAGCTGCAGGCTACGATGGGTTAACTACCTGAGGCCTGATCTGAAGAGAGGCAAGATCACTCCCCAGGAGGAGAGCATCATCGTCCAGCTCCATGCCTTGTGGGGCAACAGGTGGTCGACGATCGCGCGTAGCCTCCCGGGCAGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCCAGGGCCAGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGAGCCAGCAGCTGCAGCAGCCGACGCTAATGCCGACGCCGACGCCGCAGAGCAAGGACATCATCGTTGCCGAGACCGGTGACGCGCGCACCGACGACGACGCGGGCGGCGCCGCAGCGGCTGTGGCGCCGTCGTCGTCGTCGTCGTCTTTGTCGATGGGGGGCGGGGAGGCGGAGGACTTGATCATGCACCAGGACGCGATGGACGACCTCATGATGTGCCCCGCCATGTCCTACCACCTCATCCTCCACGGCGCCGCCGTCGCCGGCCATCAGCTGAGCGACGGCGGCGGCAGCTGCTGCGCCTCTACCAGCGAGGACTACGGCTCCAGCGAGGACGACGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGGCGCCGCCGGAGCATGCACGCTGTGGTAG
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| Protein seq | MAAAEVQSAAGWGRQLQQDGGGWRKGPWTSQEDALLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYLRPDLKRGKITPQEESIIVQLHALWGNRWSTIARSLPGRTDNEIKNYWRTHFKKGKPSKNIERARARFLKQRREMQQSQQLQQPTLMPTPTPQSKDIIVAETGDARTDDDAGGAAAAVAPSSSSSSLSMGGGEAEDLIMHQDAMDDLMMCPAMSYHLILHGAAVAGHQLSDGGGSCCASTSEDYGSSEDDGATWGSLWNLDGAAGACTLW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0508500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0618400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019420 | RBH | 0.0 | 1.645228 | 2.779406 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020200 | RBH | 0.080593 | 0.000000 | 0.420633 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019920 | RBH | 0.0 | 0.0 | 3.511459 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019840 | RBH | 0.0 | 0.0 | 1.418767 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0398500 | RBH | 0 | 2.7624705 | 0.8427215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018650 | RBH | 0.0 | 0.000000 | 0.114701 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0398500 | RBH | 0.046427 | 1.536811 | 0.8327305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019100 | RBH | 0.0 | 3.961249 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019470 | RBH | 0.115637 | 0.000000 | 0.230502 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018920 | RBH | 0.0 | 0.0 | 0.491662 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018870 | RBH | 0.298710 | 0.0 | 0.986692 |
