Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0470600 | OGI:04071370 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:23510286-23512025 | ||||||||
| Gene Symbol | MS188, OsMYB80, MYB80, OsMS188, BM1 | ||||||||||
| DNA seq | ATGATCCATGGAAGAAGTAAACAATCTGTCTGAACTGAATTGAATTATCCATTGCTCATGGAGTGCGACTGAAGCAGAGGACTGGAAAAATACCTTGGCCTCCGGCTCAATCACTCAATCAATCAGTGCTTCTCGGTAAAACTATTCACATCTCACTTTTTTTTCTCTTTTCCAAGCAAAAAGAATCCCCATTTTTCTTGCCAGCTACATACTATAGTTTTTCACTTTTTCTGTCACTCTTTCAGCAATATTATTGGTAGCAATTTTTCGCTCTATCCAATTCTCACCACCTGCAACTGCAAGTGATGTGGATCATGGCGTGCTTCGCCGTGCTAAGTTTTCCCGCGTTTTATAGCTTAGCTACACCATGTGATTCGTGAGCTCGTCGGGCAAGTCCCAGAGCACGCAGTCGGAGGCGAACAGGCCCGACATGTCGGAGGCTGCCCCCTTCCCGCTGTCCTTGCCGTCGTCCGCGGCGTCGTCGTCGCCGCCGCTGCTGCCGACGCTGTCGTTGCCCTTCTCCGGCAACTCCCGCCTGGCCTCCTCGGTGCCGGAGCTCCCGCTGTACAGGCTCTGGTGGCTCCACATCGACGTGCCCTGGTCGCCGTCGCCGCCGAGGACGTAGCCCTGCGCCGCGGAGGCCCCGTCGTACCGGAACTCGGCCTGGGCCTGCGCGTGCGCGTGCGCCGCCGGGTTGTACGTGGCGTACATCCCGGCGAGCCCCTCGGACATGTCGCCGGGCGGCCACGGCTTGTCCTCCGCGGGGGCGGAGGGCGCGGCGGCGGCGGCGGCGGCGGAGGCGGTGGAGGGATCGCTCATGATGGCGCGGGACAGGCCGAGCTTGATGCGCTCGATGGTGTCGTCGGCCTGCGGGTGGTGCGGCGGCGCGGCGGGGAAACAGGGCGCGGCGAGCGCGGACGCGCTGGCGCCGGCGCCGGCGCCGTCGTGCACGGCGGGCGAGGGGAAGTCGGAGGGGCGCTTCTTGGTGAGGAGGTGGAGCATCTCGTCCTTGAAGCACCCCAGCGCGGCCTCGGCGAGGTGCGCCACCTGCGGCGGCGCCAGCGTGGTGGCGATCTCGGCCATGAGGTGCGAGAAGGACTTGTGCGTGACGGGGTCGATGCCCATCCCGGACAGCTTCTTCTTCAGCTTCGTGTTCCAGTGGTTCTTCACGTCGTTGTCCGTCCGCCCCGGAAGCTGCGCCGCGATCACCGACCACCTTGCCACACACAGCCCCATCCCGCATTGCTCAATACATTCCTCCAAAAATGACCCAAGATCACAAGACGGTGTAGCGAGACCACTCGTTGATGCCTACCTGTTGCCGACGACGGAGTGGAGCTTGATGATGGTCTGCTCCTCGGCGTCGGTGAACTCGCCGTGCTTGAGGTCGGGCCGGAGGTAGTTGGTCCACCGCAGCCGGCAGCTCTTCCCGCACCGCTGCAACCCTGCCAACGTTCCAGCAACAAACACCCCGGTCAGAGCGCCGCCGCTGCTGCAACCACGCGTTCGCCGGTGGCGGCGCGCGCGCCAACGTACCGGCGTTCTTGGGGATGAGGCGCCAGTTGCGGGTGCCGTACTGGGTGATGTAGGAGAGCAGCTTGTTGTCCTCCTCGGGCGTCCACTGCCCGCGCTTCACGTTGTCCTTCTCGCAGCACGGCACCCGCCCCATGATGTCGCCGCCGTCGAGATTCCGCTGCTGCTGCGTGCGTGCGGCGCTCACACGGCCGCGCCGCGTGTTAT
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| CDS seq | ATGGGGCGGGTGCCGTGCTGCGAGAAGGACAACGTGAAGCGCGGGCAGTGGACGCCCGAGGAGGACAACAAGCTGCTCTCCTACATCACCCAGTACGGCACCCGCAACTGGCGCCTCATCCCCAAGAACGCCGGGTTGCAGCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAACTACCTCCGGCCCGACCTCAAGCACGGCGAGTTCACCGACGCCGAGGAGCAGACCATCATCAAGCTCCACTCCGTCGTCGGCAACAGGTGGTCGGTGATCGCGGCGCAGCTTCCGGGGCGGACGGACAACGACGTGAAGAACCACTGGAACACGAAGCTGAAGAAGAAGCTGTCCGGGATGGGCATCGACCCCGTCACGCACAAGTCCTTCTCGCACCTCATGGCCGAGATCGCCACCACGCTGGCGCCGCCGCAGGTGGCGCACCTCGCCGAGGCCGCGCTGGGGTGCTTCAAGGACGAGATGCTCCACCTCCTCACCAAGAAGCGCCCCTCCGACTTCCCCTCGCCCGCCGTGCACGACGGCGCCGGCGCCGGCGCCAGCGCGTCCGCGCTCGCCGCGCCCTGTTTCCCCGCCGCGCCGCCGCACCACCCGCAGGCCGACGACACCATCGAGCGCATCAAGCTCGGCCTGTCCCGCGCCATCATGAGCGATCCCTCCACCGCCTCCGCCGCCGCCGCCGCCGCCGCGCCCTCCGCCCCCGCGGAGGACAAGCCGTGGCCGCCCGGCGACATGTCCGAGGGGCTCGCCGGGATGTACGCCACGTACAACCCGGCGGCGCACGCGCACGCGCAGGCCCAGGCCGAGTTCCGGTACGACGGGGCCTCCGCGGCGCAGGGCTACGTCCTCGGCGGCGACGGCGACCAGGGCACGTCGATGTGGAGCCACCAGAGCCTGTACAGCGGGAGCTCCGGCACCGAGGAGGCCAGGCGGGAGTTGCCGGAGAAGGGCAACGACAGCGTCGGCAGCAGCGGCGGCGACGACGACGCCGCGGACGACGGCAAGGACAGCGGGAAGGGGGCAGCCTCCGACATGTCGGGCCTGTTCGCCTCCGACTGCGTGCTCTGGGACTTGCCCGACGAGCTCACGAATCACATGGTGTAG
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| Protein seq | MGRVPCCEKDNVKRGQWTPEEDNKLLSYITQYGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKSFSHLMAEIATTLAPPQVAHLAEAALGCFKDEMLHLLTKKRPSDFPSPAVHDGAGAGASASALAAPCFPAAPPHHPQADDTIERIKLGLSRAIMSDPSTASAAAAAAAPSAPAEDKPWPPGDMSEGLAGMYATYNPAAHAHAQAQAEFRYDGASAAQGYVLGGDGDQGTSMWSHQSLYSGSSGTEEARRELPEKGNDSVGSSGGDDDAADDGKDSGKGAASDMSGLFASDCVLWDLPDELTNHMV |
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| Function | Transcription factor MYB80 [UniProtKB/Swiss-Prot:Q7XQN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0470600 | Os04t0470600-01 | Chr04 | 23510286 | 23512025 | - | irgsp1_rep | ||
| CDS seq | ATGGGGCGGGTGCCGTGCTGCGAGAAGGACAACGTGAAGCGCGGGCAGTGGACGCCCGAGGAGGACAACAAGCTGCTCTCCTACATCACCCAGTACGGCACCCGCAACTGGCGCCTCATCCCCAAGAACGCCGGGTTGCAGCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAACTACCTCCGGCCCGACCTCAAGCACGGCGAGTTCACCGACGCCGAGGAGCAGACCATCATCAAGCTCCACTCCGTCGTCGGCAACAGGTGGTCGGTGATCGCGGCGCAGCTTCCGGGGCGGACGGACAACGACGTGAAGAACCACTGGAACACGAAGCTGAAGAAGAAGCTGTCCGGGATGGGCATCGACCCCGTCACGCACAAGTCCTTCTCGCACCTCATGGCCGAGATCGCCACCACGCTGGCGCCGCCGCAGGTGGCGCACCTCGCCGAGGCCGCGCTGGGGTGCTTCAAGGACGAGATGCTCCACCTCCTCACCAAGAAGCGCCCCTCCGACTTCCCCTCGCCCGCCGTGCACGACGGCGCCGGCGCCGGCGCCAGCGCGTCCGCGCTCGCCGCGCCCTGTTTCCCCGCCGCGCCGCCGCACCACCCGCAGGCCGACGACACCATCGAGCGCATCAAGCTCGGCCTGTCCCGCGCCATCATGAGCGATCCCTCCACCGCCTCCGCCGCCGCCGCCGCCGCCGCGCCCTCCGCCCCCGCGGAGGACAAGCCGTGGCCGCCCGGCGACATGTCCGAGGGGCTCGCCGGGATGTACGCCACGTACAACCCGGCGGCGCACGCGCACGCGCAGGCCCAGGCCGAGTTCCGGTACGACGGGGCCTCCGCGGCGCAGGGCTACGTCCTCGGCGGCGACGGCGACCAGGGCACGTCGATGTGGAGCCACCAGAGCCTGTACAGCGGGAGCTCCGGCACCGAGGAGGCCAGGCGGGAGTTGCCGGAGAAGGGCAACGACAGCGTCGGCAGCAGCGGCGGCGACGACGACGCCGCGGACGACGGCAAGGACAGCGGGAAGGGGGCAGCCTCCGACATGTCGGGCCTGTTCGCCTCCGACTGCGTGCTCTGGGACTTGCCCGACGAGCTCACGAATCACATGGTGTAG
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| Protein seq | MGRVPCCEKDNVKRGQWTPEEDNKLLSYITQYGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKSFSHLMAEIATTLAPPQVAHLAEAALGCFKDEMLHLLTKKRPSDFPSPAVHDGAGAGASASALAAPCFPAAPPHHPQADDTIERIKLGLSRAIMSDPSTASAAAAAAAPSAPAEDKPWPPGDMSEGLAGMYATYNPAAHAHAQAQAEFRYDGASAAQGYVLGGDGDQGTSMWSHQSLYSGSSGTEEARRELPEKGNDSVGSSGGDDDAADDGKDSGKGAASDMSGLFASDCVLWDLPDELTNHMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0470600 | RBH | 0.0 | 0.0 | 0.384979 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39470 | RBH | 0.0 | 0.0 | 0.215135 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0579300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017100 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016830 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017060 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0366100 | RBH | 0.1719935 | 0.7952145 | 0.038315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015860 | RBH | 0.0 | 0.0 | 0.094140 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0365000 | RBH | 0.264497 | 0.301871 | 0.175932 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016150 | RBH | 0.307315 | 0.0 | 0.0 |
