Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0461300 | OGI:04070240 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:23040201-23048445 | ||||||||
| Gene Symbol | MADS61, OsMADS61, MADS-27b | ||||||||||
| DNA seq | TTCTCCCCCCCCCTCCAATAATTCAACCCCCTCTTCTGGGAAACCTGGGAGCTTTCTCCTTCAAGAGCTCCCTGCTAGCTAGATCTCCTCCTCTCTTTCTCTCTCTCTCTCTCTCTCTTTCTGTCCATTTCTATCTGTGCTCTCGCCTGAGCGGCGACAATCCAGCTGAGATCGATCGATCGATCGATGGGGAGGGGCAAGATAGTGATCCGGCGGATCGACAACTCGACGAGCCGGCAGGTGACGTTCTCGAAGCGGCGCAACGGGATCTTCAAGAAGGCCAAGGAGCTGGCCATCCTGTGCGACGCCGAGGTCGGCCTCGTCATCTTCTCCAGCACCGGCCGCCTCTACGAGTATGCCAGCACCAGGTCAATGGCTTCTCCCTCCGGCCCTAGCTTATTAGCTTTTCTATAGATTCCGTTCTTGCTTTGGCTTATGATTATTAGCATGTTTTCCTCGATCGTCTTCAACTCTCCATGCGTAAACACTTTATTTGGTTGGCATCTTTCTTCTTATTATTGTTCTCCGTTTCTACGGTTTTTTTTTCTCTCCATGAAAGATTAGAATCTTATGAATGAGTTTTACCTTTGACAGCTTCAGTAGTACAAAAGGTTATCGTGAAAATTTTATATATATTTTTTTTTTGCATCTTTGCACCTATTATTCCCTGTCATATGTATACATATACATCGGCCATAAGTGTTTAAGAACTAATGCATGTGTCAGGTTCTTCAATTTCCTGTTAGTCTCAGATTAACTACTAGTTGTTCATCTTTGTTTTTAACCTTCTTCTAGCTAGGGTCCCCCTATGTATGGCCATATGTCAGTTGTGTGTTTACTATTTTGTCATGCATATTTTTCGAAGGAATAAATATGTCAACTATGCTTTGCAGTGAAGCAATAATTGATCTAGCACTCTTGGAATAAAATTGTGTGATAACTGTACACTTATACGTATGATTTCTGCTCACTTCATATAATTGTTAATTTACCCTTTTTGCCGTACTCTTACACTCAAAAGCTAGCACACGCATGCATGTGCTTTCAGATTACAAAAATAATCTTAGTAAGAGTTGTGCCGGCCATTCGTTTTGTGCAGCATGAAGTCAGTGATTGATCGATATGGGCGAGCTAAGGAGGAGCAGCAGCACGTCGCAAACCCCAACTCGGAGCTGAAGGTATGCCTTGATGACTGCAACTAAACATATTTCTTCTTCTGCCGATCTCTGTCATTTGTGTTGTTTAGGAGTTTTGTAGCGTCTTCATATATATAACAGAGAACTAACCTTTCTAAACTCTAACCTGAGAGAAATTAACTCAACAGAGATTAATAAAAAAAGCATGCAGGAGCTAGCAAGTTGTTCTAATTAATGCAGTACTTAACTAAAAATAAGAACAGAGATCGAAATAATCCTTTGACATCATCTATTCATTTGGGTTAGTTCCAGTGTTTTGGTTGGACATATGCACATGCACTACACCCCCTGCCGGAATACTATTTATCTCTTTTCAAGCGTAATTGAACAAGATAAATTTGATCATCGCACAGATGAAAGCCTGATTAATTTGGTTTCCGGTGGAGATAAATTTGTCAGTGCTGTTTATTCAGAATTCACAAATTTCTGCGACAGTATGTCTGAAGGATAGTTTCCCGATATCTGACCGTCTATGATATGCATAATTAATTTTCCCACTAATACTGTTTGATATTTCAAACATGCACAAACTTATAAATGTTCAATATTTTCATCGTGTTGACAACATCCTTTATTTTCCTTCGTCTACATCATCTCAACTGTTACCAAGAAATTATTTTCGAGTAAGGACACATCAGAGTTTTTCAGTTAAAATCTCCGTTGTTTTGAGTGAATTATGTAATAAGAGATAATTAGGCAAGTTTATATTTGTAGTTATACGTAGAGCGGGAGTGTTCACTTCAATTATCTTAAAAGAAAACACAATCAAGGTTCTCTAATTTTACTGTGCATCAGTTAGGCAAGTTTATATTTGTAGTTATACGTAGCAAAACTAAGGCACAAAGTACAGGAAAATGGCTTTAATTAGCTAGGCTTTTAATTTAAACAGGCCAGGAAAAAAAAAACTACCTACTGCATGTGTACATTGCAGTAACTTTGTTATCGGAGCTATTGCCTATTTAGCTAGCACTTAGCAGGATGCATTCCCATTTTGGTCCATTAGTGACACCTTTTCACCATTATTGCATGTAAGCACATTGCTTCATCCTCTACGTTATAATTCGCGTGATCTGCATGCATGTATGCATATACAAAAACAATGGTCGTGTTTATTAGGTATACTAGAGGGGAACCCCCATGCGTGTTGCCGCGGAAAAAATGTATGAGATAAGTAAACATGAGATGCAAATTAGATTTGCTTTATTTTAAATGATTGGACATCATATAAGTAAATATCATTTATATATTATATATCATGCTAAAAATATTAAGATAATGTATCTTCATATGAGATCAAAGGGTACAAATAATTGAGATGGTGTATTAAAAATGCTAGAAATAAATTAGATGTGTGTATACCTAGAGAACATAGACAATTTACATCGTAGATGAATGATCCAAAGGCTACAAATAACTAGGATGATGTGGCTTCAGGAGAGAAGAGAGAATTAACATTAACTATATATAGTGATGATGAACCTTATAAGTACCGAATACTCTCACCAAAGACAATCTTTAGCTTGGTATCAACAAATGTAGATGGACATGGTAACCAAGCATCTCTATATTCATATAAGAGGAATTTCAAATAGTTCTTGATAGCCTATCCACGATGAGCTTTTATGTTGTAGTGGTGTCTCCTCTGTCCTTACTCTTCAACCAACCTTCCAATAAGCGAAATGTTTCCTTAGTTGATAGACCTAACAATGCCTACCGTGCAAGCAAATTCTACCATTGGTTTTGCCCTATTGGGATATAAGGTAGCTTTGGATGGTATATAAGGAGTTATCTTAAGAAGTAGTGCCAACTTAAGTATATCTAGCTCATCCCTTCATAGGTGCAAAATTATGACATAGGCATGTAATGGGTAGAGGCATGCTATATGAAGGTAGCATAGCTTGCAGAACATATTGCATTCTCATCACCGTGACTCAATGATGTTGACACTAGTTAGTAAGCCAACCCTTTTTTTTTTCCAAAAAAAAAAACTATAGCTAGTAGCTCAACTCAGACTTAGTAATTTATTTGTGAGTTTTCTCGGGATAAACCCAAGGAATAACAAGGCTTACAACTTTTATTACTAACTACATTTGTGATGAAAAAAGTAAGCATTGTTTGTTGTAAGAGAAATTCTACGTTTTACGATTGACAAGCGACATGTCCTATAAATTGGCATCGACGAACGTGAGTTCTACGAAATACAAAATACCTTGGTACAAGCATTTCTGTCCCTTTTTATCATCGCCACTAGGTTTCCATCCATAGACCTGCATTCTTCTAAAAGGACCATTCTGCTCATAAAAAGATCTCCATTAAGTGTGCAAACATTTTTTTCATACAGTTTTTATCAAATTCTAGGGGCAAATTGGTTTTCTAAAGACTTAATGGAGGTTTATGGATGGAAACCTAATGGCAGTGACAAAACGAGAAAAAAAACACTTGTACGATGATATTTTTCTAGAGCTCGAGCTTTCTAATGGCAACTTTTAAAATCGGTAGTTTGTCAATAACGAAACATATAATTTCTCTTGTTTTAAATGTTAGTGATGTGGTTTTTTGCATAGTAAATGTACATTGACAATGGTAAGGAATAAATATGTATTGGCCTTCTCAACTCTTAGTTGATTACACTTGAATCAAGTTTTTTTTAACAATAGAATAAAACCTAGTCTCTACAGCAACAAAGATGGTAGCCAATAACTTCAAAATAAACAACCTCATCCATTTATATGCATCCACCTACACCCCAAAATCTTCTGAGAGCTCACCTTTTCACAATGGCGAAAGCCCTTGTGCCATTGAATTGGGTTTGCCAAATCACCACTTTCGCTATCTTTCATTTTGAGAGAAAATAGAAACATTTCTAGTCTTTACCAAGGTTACCAAAATCAGGTGTTTGCTCCCCCTCTTTTGCTGTAGTGTGAGAAATAATCCCGCCTAAAACAAGTGAATCTATCTTACAACTAACAAGTCACACACGTCATCTTTCTTAAAAAAAGGGAAATAAAGAGGACAACAAATCGGGTGAGGATCCTCTACCATAATATCACTATACCATTACGGTCACTTATATGTGAGTTCCGCTTTCTTAGTGTTACACATATCAATGTCTATAATGGTAGTGTCATTATGGTAGAGGGTGTAAACCCCAACAAATCATTGTCGCGAACGCAGCTATTAGCAACTAGAATTACCCTATGTTGCCTTCCTCAAAGACTAGCATTGATTACCTTAATCGACTTTCTTGTCCCCGCATGGAGATTATATGCTTACTGCAACTGTGCAATAAGGATCGAAGCAGTCTAGGGCAGATTCGCAACCCCAGATTTTGATTCGATGATCTAGATTATGTATTAAAGAACATTTGTGTAAACCTAGATTTCTCATCATGCATTGCTAATGCAACTGCTAAGTTGTAGTTATACTAGCAACCACACCAGATCTTGGTCCCCAGTCCCCAAGCCATAAAAACTACCACACATGTAAAGGAATATCTTACCTTCTAAATTACTACCTCCATATTTTAATGTATGACGCCATTGACGTTTTGTTCAACGTTTAATCATTCGTCTTATTTAAAAAATTTATGTAATTATCATTTATTTTATTATGACCTGATTCGTTATCAAATGTTCTTTAAGCATGACATAAATATTTTCATATTTACATAAAAGTTTTGAATAAAATAAATGGTCAAACATTGGTCGAAAAGTCAACGGTGTCGTTTAAAATACGGAGGGAGTACTTTTTATCATTTAAAATTTGAGGATTTGTCCAAACGTCGAAATTGGATAATAATGGGTGACAATCAACTTTGCCATTTTGTCTTTCCAAAAAATTTTCCGTTAAAGTACGGCTGAACCATTTAAGCCCTCTCGCTTTGGTTCTTTTGAATATTTTTATTGTTTAAGCCGCTGTTTTTTAAACCTTAAGTAGTAGACTGTTAGCTTCACATAGACCAGAAAAGCTACTGTAACCTAGCTTTTAGCTTAACATAGAGTGACTTATGACCTTAAAAAATACAAACGAAAAAATATCTATTTATTTAGGTTTAAACATAAACAAAAGAGGGCCTTAATCAACAAACAGCCGGATGCTCATGCTCATGTGTCGTTGAGAGGATCCCACTCGATAATCAATTGGCTTAATAAACTCAGCTAGAGGGGTAAAATATCGATCAGTAGATCACACAGATAATAATCCCTTTTATCAGAAGCTGATTTCCTATAAGAAAAATGTAGAGCAGCCGCATCCACGATGCGCAAAACAACCAAAAGGGCAATATTCAATCCACCGAACACCCTTCAGGATAATTCGTATACAAAACTTGCAGGTACACAACTAATTATGGTCCAATTCCTAAGCTGCGTAAACGGTGGAAATGTACATACAAATTGTCAATCGAACAGTCCTCATGCCATCGAAATGCTTCTGAATTTAGTTAAAATAAAATGCTTCTGAAGAGAACCATCCCATCACAGCTCGCATACAGAACACCCTGCTTGAATTCAGAGGATAAAAACATCATTATAACAAGAAAACTAACAAAGAATCACAAGGGGCACGTACCTGTTAAATCTGTGTTAAATCCTCTTAAAAGGATCAGTACTGCATCTTTAAGTTCACATTGAACCTTTTGCTTCGGTAACAGCTGACAGATCTGTACAGATTTCAGACTAACTGCTTATCTTTCACCGCAATAAAGCTTGTACCAGGATGATATAATCATCACTTACCTGACTTGTGCACTCTGCAGATACTTTGTAGTTAATCTAGCTTGGTGGGACTTGGGAGCATTTTGTTTAGACAAACAAGTTTTTTATCTGACTTGTGCACTCTGCAGATACTTTGTAGTTAATCTAGCTTGGTGGGACTTGGAAGCATTTTGCTTAGACAAACAAGTTTTTTACCTGACTTGTGCACTCTGCAGATACTTTGTAGTTAATCTAGCTTTGGTGGGACTTGGAAGCATTTTGCTTAGACAAACAAGCTTTTTACAATAGGGGGTAACACCCCGCAAAACGAGGACTGATAATGGAGTACCAAATTCAATAGAGTTGGTAGCTCATCGTCTTATCTGGAAAAAAAACTGTCTTCAAACTGGAAAGATAATACTACTTCCCTTATTTGTTTACAACAAATTTCTTTGTTTGCCTCTTGTTACTTCTTTTACCATACACAATAACTTCCTCAGTTCAAATAGTCTTCTTGTCTAATGTAATTGAGTTTCCTTTTTTTTAAAAAAAAACTAGTGAGTTGATAACCCAGCATGTTTCTATGGGTATACACAACATATTTATATTGCTGCTTTTGGCAAACCTGGATTCTGCATTTCTTGACTCTGTTTTCATATCCAATAGTTCTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAGCTTGCAAGAAAATCATCGGTATGGCCATAAAACCCTGCAAGTTTTTCAATGTTCCATCAGAAAATTCCTCAAGATAGAAAAACATAAACCATCATATATCTACTACTATGAAATACATGCATCATGAACCCTTGATGATGAACTTTTTTTTTTTGTGGGGACTTGCTCATGAATCCAGCAACTGCTAGCGACAATAATACTTCCAGCACCTGATTGTATAGTAAATATAAACTAGTACCAGATCATAAAAACAAGCACCTAGTGCTTGGGTATATGATACTTAGAAAAAAGAAGAAAAAACAGAGTATGAAAGTGATATATGCTGATTCCAAATTTCCTATAGATAATGCATTGTTTAACCTTCACAAACAAAAGAAATGAAGAAGGCACGTGAATTTTCTATATCATTTAAAAGTAAGAAATATATACCTTCAGCCATTCGATTTTTATGCATTTCCGGTTATCTCTAAAAGAAAAACAGAACTGAGCACCCATCAAAGGCGGACAGACCAAATTTACAAAGGAGAGTGAATATCACATTTTCTTCACCTGTGCTTTCTGCCTGGTAAATTATTGTTCAAACACTCCATTTTGTCCTTCAGGCCTAATTTACAATACCTAAACTAGAAAGGTACAAATTATTTTTATTATCAATTAACAGCTGTCTGTTGATCAGCTAAAATTAAGTGTCAATATTCACTCTGTATATCATCAGAACAACACTATAACATCCATTGGTTGATGGCAGGCAGTTGATGGGGCAAGATCTTTCTGGATTGGGTGTCAAGGAACTGCAAACTCTAGAAAATCAGCTAGAAATGAGCATACGCTGCATCCGGACAAAAAAGGTCAACCTACTAACCATATTTTTTTGTTGGGCACCTGATTGATTATATAATGGATTAACTTAAGATCAATATTGTTGTTTTCAGGACCAGCTCATGATTGATGAAATCCACGAACTGAATCGAAAGGTTCTACAACATCATGTACAATTGCTAAATCTTTGAATCAGCTAGTAAGCTAACTCTATTGCTGGCTTATTTGCAGGGAAGTCTCATCCACCAAGAAAACATGGAACTGTACAGAAAGGTCAACCTGATTCGCCAAGAAAATGCTGAGCTGTACAAGAAGGTACTTGATAAATGCAGATAGATGATTTCACAGGATATACGCTTCATTATATGATGACAGCTAATCTCTCTCCTCAGCTCTATGAGACAGGGGCAGAAAATGAAGCGAATCGAGATTCAACAACTCCATACAACTTTGCGGTTATCGAGGAAGCCAACACTCCTGCTCGTCTTGAACTCAATCCCCCAAGCCAACAAAATGATGCTGAGCAAACCACACCTCCTAAACTAGGGTAACTCAGATTTTCTGCACATGATCCATCTATCCATTCTCAGTTCTTTAGTGAAACATCAATTATAACTTAATGAAATTATTGCAGGCTCCAATTGCATCCATGACAATTTATGGTGTGGAAGTGTTGCCTATATTTTCACTATTCTTAAGGGCTACAGTTCAGAGCTCTTAAAATGTATTGGTCATAAAGAAGCTAACACATAACAAGACACAGTTTGCATGCTTGGATGATTAATATCTGATACTGTAAAATCTATTCGAATAAAAATGTATTATC
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| CDS seq | ATGGGGAGGGGCAAGATAGTGATCCGGCGGATCGACAACTCGACGAGCCGGCAGGTGACGTTCTCGAAGCGGCGCAACGGGATCTTCAAGAAGGCCAAGGAGCTGGCCATCCTGTGCGACGCCGAGGTCGGCCTCGTCATCTTCTCCAGCACCGGCCGCCTCTACGAGTATGCCAGCACCAGGTCAATGGCTTCTCCCTCCGGCCCTAGCTTATTAGCTTTTCTATAG |
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| Protein seq | MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLVIFSSTGRLYEYASTRSMASPSGPSLLAFL |
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| Function | MADS-box transcription factor 27 [UniProtKB/Swiss-Prot:Q6EP49] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0461300 | Os04t0461300-01 | Chr04 | 23040201 | 23048445 | + | irgsp1_rep | ||
| CDS seq | ATGGGGAGGGGCAAGATAGTGATCCGGCGGATCGACAACTCGACGAGCCGGCAGGTGACGTTCTCGAAGCGGCGCAACGGGATCTTCAAGAAGGCCAAGGAGCTGGCCATCCTGTGCGACGCCGAGGTCGGCCTCGTCATCTTCTCCAGCACCGGCCGCCTCTACGAGTATGCCAGCACCAGGTCAATGGCTTCTCCCTCCGGCCCTAGCTTATTAGCTTTTCTATAG
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| Protein seq | MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLVIFSSTGRLYEYASTRSMASPSGPSLLAFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0461300 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g38770 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0579600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015980 | RBH | 0.000000 | 3.246618 | 2.481950 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016720 | RBH | 0.000000 | 4.012376 | 0.714323 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016450 | RBH | 0.883074 | 5.554468 | 5.815550 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016180 | RBH | 0.069324 | 0.277058 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0016420 | RBH | 2.290893 | 10.142087 | 3.072664 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0359500 | RBH | 1.3568515 | 11.8081095 | 9.5121185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015220 | RBH | 0.113769 | 0.399343 | 1.416801 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0358000 | RBH | 2.2780885 | 16.4419395 | 2.946663 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015760 | RBH | 0.092527 | 0.665121 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015660 | RBH | 0.000000 | 28.229410 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015610 | RBH | 0.000000 | 49.722500 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016150 | RBH | 0.323051 | 1.010155 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016260 | RBH | 0.000000 | 2.146792 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015460 | RBH | 0.000000 | 0.978306 | 1.469030 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015510 | RBH | 0.495109 | 46.568035 | 0.369287 |
