Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0461000 | OGI:04070190 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:23024212-23026644 | ||||||||
| Gene Symbol | Os-MYB39, OsMYB39, MYB39 | ||||||||||
| DNA seq | AGAGGGCGTCGAAGATCATCGGGGAGGAGTTTTCCTAGAGCTCGCTGCTGCTGTTGCTTTTCTCCGGCGATGGGGCGATCGCCGTGCTGCGAGAAGGAGGGGCTCAAGAAGGGGCCATGGACGCCGGAGGAGGACCAGAAGCTGCTGGCCTACATCGAGCAGCACGGCCACGGCTGCTGGCGCTCGCTACCCTCCAAGGCCGGTAAGCGCCGCTTATCTAGCTTAAATTTCTTCTCAACCTCTGCAATCCTAGCTGCAATGTTCGGTCGAGGCGATCGATCCTCGAGGCTGGCTACTCTCTGAACTCTGATCTGAGGTGCATGCAAACCGTGACAATCGTGTGCAGGGCTGCAGCGGTGCGGCAAGAGCTGCCGACTCCGGTGGACGAACTACCTCCGGCCGGACATCAAGAGGGGCAAGTTCAGCCTGCAGGAGGAGCAGACCATCATCCAGCTCCACGCCCTTCTCGGCAACAGGTGATCGATTACTTCGTTTTCGCATGGATGCATCATGCATACAAGATACGTAGTGCACAACTCTCCCTCCTGCTAGCTGCTCGCTCGTTCTTCACCTCGCACCCGGAGCACATTTAATTCCGTAATCGCGATGGAACCCTTGATTCTCCTGCACGAATTTTGACTGCTAGTACTTGTTGCTGACCGGCAGGTCAAGAACACACTAGCCAGTAGCCACCATTCTGCACCGTAGTCTTGGCAGACATTTATGAAAGGGTTATGCAATGCAAGGGTTGGAACACGGAGCTTAGCCAGGGGATGTGTAAATTTCGCAGGCCGTGCTACTTACTTGCTGTCCCCGTACACACCTGCTTCAGCATTTTGTCCGTAACAAACCGTACTGTCCATAGATTAACACACAAGCTAGGCTAAAAATTCTTACGTTAGAACAGAATCATCACTTGTTTTCGTTTTGTTCACACGTAATGCTGCATTGCTCATCTTTTGCCCGTCGAACAACCACGCATTAGCTGTGAGCACAGACCAATCAATGCATGCATCAACAAGGGAAAAAGTGTGAAAAGGTTGGGCAGTGAGAGGCTCGGCCCAGAATTTTCCTTTCTTTTCTCCCATATGATTCGGCATTCAAGCTCGTCATTTAAGGAGGCGAGCCCCCCCATCATTGTGGACCAAAACTGGGGTTTGGTCCACTGTTGCCACCTGCCCCTCTTCCCATTTTGACTCACAGCTTCCGATCATCTCTGCCCTCTGTCTGTACTACGCCACGCACGCCTTAAATCACACCGCCGATTATTTACGTTTTCAAGAGTGCTGTTTGTTTAATTTTGTCACTGCGAATGGAGGGCTTTTGACGTGCGATTTTCCTGATCTTTTTTCTTGGCCGGCGTTGGCGTTGTTGTTGTTTTGCAGGTGGTCGGCGATCGCGACGCACCTGCCGAAGCGCACGGACAACGAGATCAAGAACTACTGGAACACGCACCTAAAGAAGCGGCTGGCCAAGATGGGGATCGACCCGGTCACGCACAAGCCGCGCTCCGACGTGGCCGGCGCGGGCGGCGGCGGCGGAGGTGCGGCCGGCGGCGCGGCGGGCGCGCAGCACGCCAAGGCCGCGGCGCACCTCAGCCACACGGCGCAGTGGGAGAGCGCGCGGCTCGAGGCGGAGGCGCGCTTGGCTCGGGAGGCCAAGCTGCGCGCGCTCGCGGCCTCCGCGACCCCGGGCGCGCCGCACCTCCCGGCACCCCCCGCGTCGGCGGCGGCGGCGGCGGCGGCTCACGGCCTCGACTCGCCGACGTCCACGCTGAGCTTCTCGGAGAGCGCGGTGCTCGCCACCGTGCTGGAGGCGCACGGCGCCGCCGCCGCGGCGGCCGCGCGCGCCGCCATGCAGCCCATGCAGGCGTACGACGAGGCGTGCAAGGACCAGCACTGGGGCGACGTCGACGCCGCCGACGTGGGCTTCCCCGGCGCCGGAGCGGGGTTCACGGGCCTACTCCTCGAAGGCTCCTTGAACCAGATCCCGAGGCCGGCGGGGAGAGACGCGGAAGCCGACGGCGAGTTCCAGGAGACCGAGGAGGAGAAGAACTACTGGAACAGCATACTGAACCTGGTGAACTCCTCGTCGGCACCTATGTCGACGGCCGTGGTTGTGCCCGCCTCCCACGCGTACTCGCCGGCGCCGGACTTCTGAGCGGAGAAAACCTCGCCGGCATCAAACTTGATTCGATCTCATGACACAGTAAATAGTTTAGCAATGATTGTCGAATAAGATGGGACTAATATTAATGTTAGTAATTATTAATCACGTTCTTGGGTTAACCTGACAATGCTTTCGATTAAACTTGTGGGCAAGAACTTCAACTGTTCAAGGCTGTATCGACATTTGAAATTCGATGCTTGTTTTGTTCGGTGTTCTTATAGAATGTGTAAAACACTGAAACTACTATCAGAGAATGTAGCATCC
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| CDS seq | ATGGGGCGATCGCCGTGCTGCGAGAAGGAGGGGCTCAAGAAGGGGCCATGGACGCCGGAGGAGGACCAGAAGCTGCTGGCCTACATCGAGCAGCACGGCCACGGCTGCTGGCGCTCGCTACCCTCCAAGGCCGGGCTGCAGCGGTGCGGCAAGAGCTGCCGACTCCGGTGGACGAACTACCTCCGGCCGGACATCAAGAGGGGCAAGTTCAGCCTGCAGGAGGAGCAGACCATCATCCAGCTCCACGCCCTTCTCGGCAACAGGTGGTCGGCGATCGCGACGCACCTGCCGAAGCGCACGGACAACGAGATCAAGAACTACTGGAACACGCACCTAAAGAAGCGGCTGGCCAAGATGGGGATCGACCCGGTCACGCACAAGCCGCGCTCCGACGTGGCCGGCGCGGGCGGCGGCGGCGGAGGTGCGGCCGGCGGCGCGGCGGGCGCGCAGCACGCCAAGGCCGCGGCGCACCTCAGCCACACGGCGCAGTGGGAGAGCGCGCGGCTCGAGGCGGAGGCGCGCTTGGCTCGGGAGGCCAAGCTGCGCGCGCTCGCGGCCTCCGCGACCCCGGGCGCGCCGCACCTCCCGGCACCCCCCGCGTCGGCGGCGGCGGCGGCGGCGGCTCACGGCCTCGACTCGCCGACGTCCACGCTGAGCTTCTCGGAGAGCGCGGTGCTCGCCACCGTGCTGGAGGCGCACGGCGCCGCCGCCGCGGCGGCCGCGCGCGCCGCCATGCAGCCCATGCAGGCGTACGACGAGGCGTGCAAGGACCAGCACTGGGGCGACGTCGACGCCGCCGACGTGGGCTTCCCCGGCGCCGGAGCGGGGTTCACGGGCCTACTCCTCGAAGGCTCCTTGAACCAGATCCCGAGGCCGGCGGGGAGAGACGCGGAAGCCGACGGCGAGTTCCAGGAGACCGAGGAGGAGAAGAACTACTGGAACAGCATACTGAACCTGGTGAACTCCTCGTCGGCACCTATGTCGACGGCCGTGGTTGTGCCCGCCTCCCACGCGTACTCGCCGGCGCCGGACTTCTGA
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| Protein seq | MGRSPCCEKEGLKKGPWTPEEDQKLLAYIEQHGHGCWRSLPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPRSDVAGAGGGGGGAAGGAAGAQHAKAAAHLSHTAQWESARLEAEARLAREAKLRALAASATPGAPHLPAPPASAAAAAAAHGLDSPTSTLSFSESAVLATVLEAHGAAAAAAARAAMQPMQAYDEACKDQHWGDVDAADVGFPGAGAGFTGLLLEGSLNQIPRPAGRDAEADGEFQETEEEKNYWNSILNLVNSSSAPMSTAVVVPASHAYSPAPDF |
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| Function | Transcription factor MYB106 [UniProtKB/Swiss-Prot:Q9LE63] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0461000 | Os04t0461000-01 | Chr04 | 23024212 | 23026644 | + | irgsp1_rep | ||
| CDS seq | ATGGGGCGATCGCCGTGCTGCGAGAAGGAGGGGCTCAAGAAGGGGCCATGGACGCCGGAGGAGGACCAGAAGCTGCTGGCCTACATCGAGCAGCACGGCCACGGCTGCTGGCGCTCGCTACCCTCCAAGGCCGGGCTGCAGCGGTGCGGCAAGAGCTGCCGACTCCGGTGGACGAACTACCTCCGGCCGGACATCAAGAGGGGCAAGTTCAGCCTGCAGGAGGAGCAGACCATCATCCAGCTCCACGCCCTTCTCGGCAACAGGTGGTCGGCGATCGCGACGCACCTGCCGAAGCGCACGGACAACGAGATCAAGAACTACTGGAACACGCACCTAAAGAAGCGGCTGGCCAAGATGGGGATCGACCCGGTCACGCACAAGCCGCGCTCCGACGTGGCCGGCGCGGGCGGCGGCGGCGGAGGTGCGGCCGGCGGCGCGGCGGGCGCGCAGCACGCCAAGGCCGCGGCGCACCTCAGCCACACGGCGCAGTGGGAGAGCGCGCGGCTCGAGGCGGAGGCGCGCTTGGCTCGGGAGGCCAAGCTGCGCGCGCTCGCGGCCTCCGCGACCCCGGGCGCGCCGCACCTCCCGGCACCCCCCGCGTCGGCGGCGGCGGCGGCGGCGGCTCACGGCCTCGACTCGCCGACGTCCACGCTGAGCTTCTCGGAGAGCGCGGTGCTCGCCACCGTGCTGGAGGCGCACGGCGCCGCCGCCGCGGCGGCCGCGCGCGCCGCCATGCAGCCCATGCAGGCGTACGACGAGGCGTGCAAGGACCAGCACTGGGGCGACGTCGACGCCGCCGACGTGGGCTTCCCCGGCGCCGGAGCGGGGTTCACGGGCCTACTCCTCGAAGGCTCCTTGAACCAGATCCCGAGGCCGGCGGGGAGAGACGCGGAAGCCGACGGCGAGTTCCAGGAGACCGAGGAGGAGAAGAACTACTGGAACAGCATACTGAACCTGGTGAACTCCTCGTCGGCACCTATGTCGACGGCCGTGGTTGTGCCCGCCTCCCACGCGTACTCGCCGGCGCCGGACTTCTGA
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| Protein seq | MGRSPCCEKEGLKKGPWTPEEDQKLLAYIEQHGHGCWRSLPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPRSDVAGAGGGGGGAAGGAAGAQHAKAAAHLSHTAQWESARLEAEARLAREAKLRALAASATPGAPHLPAPPASAAAAAAAHGLDSPTSTLSFSESAVLATVLEAHGAAAAAAARAAMQPMQAYDEACKDQHWGDVDAADVGFPGAGAGFTGLLLEGSLNQIPRPAGRDAEADGEFQETEEEKNYWNSILNLVNSSSAPMSTAVVVPASHAYSPAPDF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0461000 | RBH | 0.0 | 0.0 | 2.681760 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g38740 | RBH | 0.0 | 0.0 | 0.962511 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0579300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015960 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016700 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016430 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016160 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0016400 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0359300 | RBH | 0.808799 | 0.029628 | 0.550895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015200 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0357800 | RBH | 0.975381 | 0 | 4.65566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015740 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016130 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015440 | RBH | 0.0 | 0.0 | 0.383234 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015490 | RBH | 0.0 | 0.0 | 0.0 |
