Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0448950 | OGI:04068390 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:22372127-22373089 | ||||||||
| Gene Symbol | ABA1, OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP | ||||||||||
| DNA seq | GTCTCCGTGTGAGTATTGACCTCAGGCGCCGCGACGTCTGCAAGAGTAGTCAGATTCAGGAGATGCTCGTTGGGTAGAGCGGATCGGAGAGTCACTGTCACAGTAGCGCTTCTGCTCTTGCTTCTCGGATCCCACCACCCAAGAAGAGCTTTGCTTTGCTCCCGTTCCACTGCCAGTGCCAGCCATGGCGCCACTCCCAAGCTCCAGCTCAACGCGGGCCACCTCTCTCGTGGCGATCCCGGGCGCCTCCTGCCCCCATGGCCAGGCGCAACGCCTGCTCGCCTTCCGTCCCCCACGACGCGGGTCACAGTGGCGCGGGCTTTGCGTGTCCCGGGGGCGCCACGGGGCGACCGTCGCCATGGCAATGCCGGCGGCGCAGGCGGCGGGGCGCAGGGCGCGCGTCCTGGTGGCCGGCGGCGGCATCGGCGGCCTGGTCTTCGCGCTCGCGGCCAAGCGGAAGGGGTTCGAGGTGGTGGTGCTGGAGAGGGACATGAGCGCCGTGCGCGGGGAAGGGAAGTACCGGGGCCCGATCCAGCTGCAGAGCAACGCGCTCGCGGTGCTCGAGGCCGTGGACGCCGGCGCCGCCGACCAGGTCATGGACGCCGGCTGCATCACCGGCAACCGCGTCAACGGCATCGTCGACGGCGTCTCCGGCTCCTGGTAAGGAGTCAAGTCGTGCCAGCGTTAGAAGCGAATTGCAACACCCACCAAGGATTGGTTGCGTCTATCAAGCCTAAAATTATGGGGTTTTTTTTTCTCCTTTCTAGAAGTACTAAGTGTAAGAATAATTTGCTGGTTTACACTATTGGCCGTCCTGTTTGTACAAGTTTTGCTTACCTATTGCTACAACCTACATGAGAATCATTAATCACAGACCTATAGTTTCAATTACAGTACAATACTGTACAAGGAAATGCAATTTGTTGCTTAATCATTAGTGCTAACTTGACATATAAGGCAATT
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| CDS seq | ATGGCGCCACTCCCAAGCTCCAGCTCAACGCGGGCCACCTCTCTCGTGGCGATCCCGGGCGCCTCCTGCCCCCATGGCCAGGCGCAACGCCTGCTCGCCTTCCGTCCCCCACGACGCGGGTCACAGTGGCGCGGGCTTTGCGTGTCCCGGGGGCGCCACGGGGCGACCGTCGCCATGGCAATGCCGGCGGCGCAGGCGGCGGGGCGCAGGGCGCGCGTCCTGGTGGCCGGCGGCGGCATCGGCGGCCTGGTCTTCGCGCTCGCGGCCAAGCGGAAGGGGTTCGAGGTGGTGGTGCTGGAGAGGGACATGAGCGCCGTGCGCGGGGAAGGGAAGTACCGGGGCCCGATCCAGCTGCAGAGCAACGCGCTCGCGGTGCTCGAGGCCGTGGACGCCGGCGCCGCCGACCAGGTCATGGACGCCGGCTGCATCACCGGCAACCGCGTCAACGGCATCGTCGACGGCGTCTCCGGCTCCTGGTAA
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| Protein seq | MAPLPSSSSTRATSLVAIPGASCPHGQAQRLLAFRPPRRGSQWRGLCVSRGRHGATVAMAMPAAQAAGRRARVLVAGGGIGGLVFALAAKRKGFEVVVLERDMSAVRGEGKYRGPIQLQSNALAVLEAVDAGAADQVMDAGCITGNRVNGIVDGVSGSW |
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| Function | Zeaxanthin epoxidase, chloroplastic [UniProtKB/Swiss-Prot:Q9FGC7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0448950 | Os04t0448950-01 | Chr04 | 22372127 | 22373089 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCCACTCCCAAGCTCCAGCTCAACGCGGGCCACCTCTCTCGTGGCGATCCCGGGCGCCTCCTGCCCCCATGGCCAGGCGCAACGCCTGCTCGCCTTCCGTCCCCCACGACGCGGGTCACAGTGGCGCGGGCTTTGCGTGTCCCGGGGGCGCCACGGGGCGACCGTCGCCATGGCAATGCCGGCGGCGCAGGCGGCGGGGCGCAGGGCGCGCGTCCTGGTGGCCGGCGGCGGCATCGGCGGCCTGGTCTTCGCGCTCGCGGCCAAGCGGAAGGGGTTCGAGGTGGTGGTGCTGGAGAGGGACATGAGCGCCGTGCGCGGGGAAGGGAAGTACCGGGGCCCGATCCAGCTGCAGAGCAACGCGCTCGCGGTGCTCGAGGCCGTGGACGCCGGCGCCGCCGACCAGGTCATGGACGCCGGCTGCATCACCGGCAACCGCGTCAACGGCATCGTCGACGGCGTCTCCGGCTCCTGGTAA
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| Protein seq | MAPLPSSSSTRATSLVAIPGASCPHGQAQRLLAFRPPRRGSQWRGLCVSRGRHGATVAMAMPAAQAAGRRARVLVAGGGIGGLVFALAAKRKGFEVVVLERDMSAVRGEGKYRGPIQLQSNALAVLEAVDAGAADQVMDAGCITGNRVNGIVDGVSGSW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0448950 | RBH | 3.408050 | 2.909691 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37619 | SBH | 32.428967 | 30.802015 | 3.952112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0448900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015020 | SBH | 6.552348 | 9.641285 | 8.573682 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015880 | SBH | 6.611372 | 1.712378 | 12.366676 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015600 | SBH | 11.691917 | 4.584910 | 27.880474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015180 | SBH | 2.356945 | 0.066631 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015510 | SBH | 188.187073 | 9.760519 | 36.421055 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0349000 | RBH | 95.4498215 | 15.4106215 | 60.679365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014350 | SBH | 4.521102 | 0.541429 | 4.993899 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0346000 | SBH | 77.5370065 | 10.0473485 | 11.158583 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014990 | SBH | 9.231355 | 0.169880 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014690 | SBH | 15.564152 | 9.312790 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014720 | SBH | 136.077667 | 19.551043 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015340 | SBH | 11.690986 | 0.672714 | 8.910297 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015510 | SBH | 5.641165 | 3.546762 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014590 | SBH | 9.525727 | 2.999068 | 9.583728 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014660 | SBH | 16.869457 | 12.131429 | 33.940277 |
