Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0442200 | OGI:04067330 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:22017906-22024024 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGGCCCAGGTGTCAGTCGGTTGCGCAACACCACCCACTGCTCGTCTCCGATCCTCACCCAAGCCTCTCTCTCTCCCTCTCACCGGAGGCAAGGTGGGGATGGCCTCGCCGGCGGTGGCGACGCGGCACCCTTCCCCCTCCTTCTTCGGCCCGGACCCTCGCCGCCGCCGCGTGAGTGCCCGCTCCCCCTCGCCCGATCCGATTCGGCCCGTGTCATTTCAGTGTTTTTTTTGTTGCGTATTCATGCGCTTGCGAATTGCGGTGATAGTACTCCGCGCTTTCGATGGTGGAGTTATGTATTTTGGTGGTGGGAGCTTTCTGTGGCAACGATCCGGTTCTGTTGGGGATTGAGCGCTGCACCTCGTTTTCAGATTACTGCAACCTGTGCGAGTTATCGAGGCATTATAGATCTGGACGGCGATAGGAATTGGTTTCAGATCGAAGTATATGCATGGTGTAGCTTTGCGCATAACAGATACCGATGAAGTGATACATAGTGTTTTTTTTTTTTAATATCAACAGGAGAGAAACGATGAATTAGTACACTACCCGCTTCAATTGTGTTTAGCTTTTTCGTTGAACAAGTTGTGCTCTATAATGATCATATTGTGTAATTTTTTTTTCTATTTAGAGAAGATCATGTTGTGTAATATGACCATAGGAGTTACACCTACCCTGGCAGTAACTTTCATATAGTCTATTTCCTTCCTTGTTTTATTCCTGAGTTGAATTCTTTTCTGAAACATGGCATCCACGTTTTGCAGGGGCATTCGCCTTCGAATCTAGGCTTCCGAAGATCGGGATTGCAGTTAAAGGTTACTGCAATTTTTGGGTGGATTAAGGGAGACACAAGAACACGTGAATTGAACCCATCTGCTGAATCATATACGCTTACAGGGTCAGCCTCAGAGGTGTTTCTCGGGTGAACATTGTTTCAAGTACATATGCACCTGATTCATGATTTTTCCTAATCATTCATTGGTTTCAGGCAGACACCAAGCCACGTGAGGTTTCTGTTGCTGTTGTTTCTTCTATTATGGACATTCCTTCAGCAGATTGGGATGCCTGTGCAGTTGATTCAGTTGATCCTGACAATTTTAATCCTTTTCTGACCCACGCATTCCTCTCAAGCTTAGAGGAATCGGGTTCTGCAGTGAAGGTGAGTGCATGAAGCATCGCTTGTTGGTTCCTTAATAAGAACAAATCCCAGTGGATGTTTTACCATTACATTATTTTTCGACTACCCATTTGTATACGCATAACAAGGACATCGATATACATATGTCTATTTGTTTTGAGCGGTTAATTCTGCTTACTGAATCATACAGGCGTTCCAGTTTTGCTTACCACACACTCAAGCTCAATTCCAAGTATTATTATATTTTGCAGATTGTTGTTGAGTATTGACGATATACTTTTCATGTTTAATTTACAACAGCACGACATGAGATTGATTGTTCAACATTACTGTGTTCAGTGTGTGCATTTTTATATTACGTGTTCTCTATGATGATATGACTGTGGAGCTGTTGTATTCATTTATTTACACCGCCGTATGATTAGATTTGATGCTTAAATACATAAGCTATGTCTTCATAATAATGCACTTACAGTGCAAAATTCTGAATATCTATATGCTCTAACCTTTATTTTGTACCAACAAGCATAGTGCCACACTTATTATGTTTTGGTCCTCCTTAAAAACCTTGATGTCCTTGACTTATTTCAGGAAACAGGGTGGTTACCTCTGCATGTTGTTGCACGGGATGAGAATGAAACTGTCGTTGGTGTTGTCCCACTTTACCTGAAAAGGTTTAACATCATTTAACACCATAGCATGTTTTGCTGCTTGCTCCATATTTCTTCATCAGCTGAACACCAACAACGTGAATTCACAGCCATTCAAGGGGAGAGTTTGTATTTGATCAATCATGGGCAGAAGCTTACTATAGCTATGGACTCGAATACTACCCCAAGTTGCAGTCTTGTGTGCCTTTTACTCCAGTAACTGGTCAAAGAATATTAGTTCGAGATACACCATACAGGGATCAAGTTTTTGAAGCTTTAGTGAAAGAATTGAAGAGTTTGACTACCAAGGTATTGAAATTAGAATTCTTGCAGTTACTGCTTTGAATTATTGTTTTACTAACTTTTCCTGCTATTGAAGAATTATAATAAAATGCTATTGCTTCTTTGACTATTTTGGTCGTTGATCCTTATTGACTTATGGTATAACTTGTCTTTTTATATTCTTGGTATTTACATGAATATTCAAGAAAGCAAAGCTCCTGCCATTGAATTATATTAATTCTGTAGTCCTCTTGGAAGCAACAAGTCAATAAGAAAATAATAAAAGGAAAGATTTAAATTCATGGCCCTCATTACACCTTATGTTTCTTCATGGTGTGTTCTAATGGAGATTTTGGTTTTCAACGCACTTCTATATTAATTCTAAATAGGGGGACAATCTTTGGATGTACTGAACCAAGTGGTTTTTTGTTTTCTTCTGCATTTCAGCTGAAGGTGTCATCGTTACATATAACATTTCCATCTGAAGGTGAATTCAGCAAGTTGAAGGATAGTGAGTTCTTGCAGAGAATCGGGATGCAGTATCACTGGAGAAATCGAGATTACAGAAGGTATGCTAGGTGCTAGCATGGAAATTTTAGGAATTCTGAGTAGAAATGTTTCAGTGTGGACTTCATGACCATATTAGATCGAAGTCAGAGTCAACCATTTAGTTATTTAGTCATAAAACAGACCGGTGAGACATACCTGAAAGCAGTAGCACTAATGTGGCAACACACCCACAGCTTGGGTACAACTACGCAACTACAGTTCTCATTAAATGTACAGATGTACTCCCACTGTCCTAAAATGTAGCAACTTTTAGCATTAAAAATTTGTTCCAAAATATTACAACTTCCCGCCTACATTCTAGACTGAACCAATCACAACATTTTCTCATTTAATTTCTCCACCTACTTCATCTTCTTAACCGATCATAACCTTTTCCCATTTAATTCCACCTACTTCCTTAATATCCATGTCTAAGCCTAAAACTTCTTATATTTTGGGATGGAGGGAGTAATACGAAATCCAACATCTCCTAGTAGTGGTGAAGAGATGATATACTTGTCATTTTTTCTGTTTGGAAAAAATGCAATGAACAAGCTAGTGATATACTGATACTAATCTTTTGTCACTTTCATTTCTTTATTTTTTTTAAAAAAAGAAGAAAATGGGAAACCCCGCAGGTTTCTATAATGGAAACCAGTTTGTGGTCACATGAAACCAGATAGAACTCACACTATGGGGTTTGTCTATTTCTGTTTAATTTTCCCTTTCTGGTCAAGCATACCAATAGAATAATTGCTGAGAGCAAATAATTTTAGAGAAAATAACCTGTTTAAGTTTAATGTTGTTGAGCTTAGCAAGGGTTGCGAATTTTCAAGTTAAAATTGTTTGCTTTCTACCCTAGACTTTACGAGACATTACTTTCAGTTGTTGTTTATCCAAAAGTTTATAAGGTTACATACTGAACTGCCTATATAGTAAATCAATATTTACCAATCTCTTTCTGTTCATTCTTTTTTCCCAGTTTTGACGAGTTTTTAATGGATTTGAAGCAACCCAAACGGAAGAATATCAGACAAGAACGTAAAAAGGTTTGCCTTATTTTGGATTACTTGATATGAATATCAGGCATGCATACAAAAAGGAACCAAAAAGTGTCTATAAGTTTGCTAATAAAGATATATATGTCTGCAAAGTGACTAACTGACTATTGTCTTCTTTACCATTCCCAGATTCCTGCTCAAAATTTGAAAATGAAGCGACTTCGTGGAGATGAGATAAAGGTGCTCATTTTATGAATGAATGATTCTGTGGCTGCACTATATTCGTTTTCTTTACTTCATCGAATATGCTTTAGTTAACATCAGCATATCCTCTTTGATTTGCTATTTTTCTTTACATTTTGAGAAGGCACTTACATATTCCATTCACTTATCATGATTTTTCTTTGCTTTGCAGAGCGAGCATTGGGACACCTTTTATAAGTTCTACCGCAACACAACTGATAATCAGTTCAGTGCATTTCCTTGTAATTTTTAAAATGTACTAATTCCCTATGTGCAAATTGGAATTATACCATATAATGTGGGCGTCGTATTAGTCTAAAATGACTTTGCTAGACTAATAATGTACTTCCTCCGTTTCACAATGTAAGATTTTCTAGCATTGTCCACATTCATATAAATGTTAATGAATCTAGGCATATATATATGTGTCTAGATTCATTAACTTCTAAATGAATATGAGCAATGCTAGAAAGTCTTACAATCTGAAACGGAGGGAGTAATTTCACTAAATCCACTATATGTGCTACTCAGCAGTGAGGACACAAATTAATCACAGTGATGAAATAAAATATCGAAACTAGTTAGTAAAATGCATGTAATTGCCATTGTGTTTCCTTGTACTTGGATAGGAAGCGCAAAGCTTATATTTAAGGATTATCGTCATGTTATCCCTCACCTTCACATTTTATATGGCCTGATACATATTTTTATATTAGTATAGAAATATTTTTCTTATGTTATTCTTCCCTTATAGGATTATTTTTTGTGTGCTTTCAGCTGGGGCAGACCATACTTGACAAGGGAATTCTTTCACCGCTTGGGAGAAAAGATGGGTGACAAGGTGATGCTTATTGTTGCTGAACATGACGATAAACATGTTGCCGGGGCTCTTAACCTTATTGGAGGTGACACATTGTTTGGCCGCTTATGGGGCTGTCTGCCAGATGCTTATTTCCCCAATTTGCATTTTGAAGCTTGCTATTATCAGGTAATTTGTGCATCTCTCAGAGCTTACAGAATGTGAACTTCATAATGGAAACTTATAATATGTATTGCAGTAGCACCTGAATATGTTTCAAAACCATTTCAAATGAAGATAACTAAATCAATATACATTTGATGTTTCTCGATGTACATATGATTTTGAATTTTTGTACCAGTTGGAACTCCAAAATATTTTGTATATGTATGAGTACTATTTTAGGAGTGGTACCATGAACGATGTAACAATTATATGGCTTGCTTATAGAATATACATACTACTCAGGCAATTGAAGCAGCTATAGAACTGAACCTGAGTAAGGTGGAGGCAGGTGCTCAAGGAGAGCACAAGATCCAGCGTGGTTACCTCCCAGTGACAACATACAGCTGCCACTACTTCTTAGATCCTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGGTATTTCATTTGAATATTTTCAGTAAGTTTTTTTATGAGCTGTTAATTCTTCTATGCATCTGAAGCCATCCTTTATGCTCAGTCCTTTGTATGTCGGATAAGGATCTTTTGCAATTTATATAATCCTAAATGCAATGCATGGCATCCAGTTATTACCCAACCATCTGACTGCATAGTATCTACAGTTATTGTAGTGTACTACTGCCATCCAAAAGCCAAACTCATTGCAGATTAGTACTACATCTGGCACCCTTAAATGTGAAATCTTGTCCTGTTTTCTGTTAAACGGTTCCAATGTTATGGCCTCAGATTATGATGGCTGATATGCATCTGCTCTGCAGATTTGTATGTTCTGCAGTCCAGTTTTGCAATGTGTACACCATTCATCGCCCTTAAACCCATCTGATTTTTTTACCACCATTTGAATATTCACTCCGTGTTCGCATTGTACTATGAAGAAACAACTAATGCATCATTGTCCTTCATTAGCCTTAATCGTTGGAGCTAAATATTCTCTTTTGGTGTAAATGTCAGGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATATACTGAACGAATTTTTGCTTACACAAGGGGATGGAGTGTAGAACATCAAAGGAACTTACAGCTATGAATATGTTCATGACTCAAGATGTGGAAGTAGCAAAAATATGGGTGATCCCATGCCTCCACAAGGAGATGATACTGTGAATATGTAAACCCACAGTTGTACATTACTAGGCTTGTAAATAGCTGTCATTTAAAAATCTCAAGTCATTAGCTTGAAATGTGACAACTG
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| CDS seq | ATGGCCTCGCCGGCGGTGGCGACGCGGCACCCTTCCCCCTCCTTCTTCGGCCCGGACCCTCGCCGCCGCCGCGGGCATTCGCCTTCGAATCTAGGCTTCCGAAGATCGGGATTGCAGTTAAAGGTTACTGCAATTTTTGGGTGGATTAAGGGAGACACAAGAACACGTGAATTGAACCCATCTGCTGAATCATATACGCTTACAGGGTCAGCCTCAGAGGCAGACACCAAGCCACGTGAGGTTTCTGTTGCTGTTGTTTCTTCTATTATGGACATTCCTTCAGCAGATTGGGATGCCTGTGCAGTTGATTCAGTTGATCCTGACAATTTTAATCCTTTTCTGACCCACGCATTCCTCTCAAGCTTAGAGGAATCGGGTTCTGCAGTGAAGGAAACAGGGTGGTTACCTCTGCATGTTGTTGCACGGGATGAGAATGAAACTGTCGTTGGTGTTGTCCCACTTTACCTGAAAAGCCATTCAAGGGGAGAGTTTGTATTTGATCAATCATGGGCAGAAGCTTACTATAGCTATGGACTCGAATACTACCCCAAGTTGCAGTCTTGTGTGCCTTTTACTCCAGTAACTGGTCAAAGAATATTAGTTCGAGATACACCATACAGGGATCAAGTTTTTGAAGCTTTAGTGAAAGAATTGAAGAGTTTGACTACCAAGCTGAAGGTGTCATCGTTACATATAACATTTCCATCTGAAGGTGAATTCAGCAAGTTGAAGGATAGTGAGTTCTTGCAGAGAATCGGGATGCAGTATCACTGGAGAAATCGAGATTACAGAAGTTTTGACGAGTTTTTAATGGATTTGAAGCAACCCAAACGGAAGAATATCAGACAAGAACGTAAAAAGATTCCTGCTCAAAATTTGAAAATGAAGCGACTTCGTGGAGATGAGATAAAGAGCGAGCATTGGGACACCTTTTATAAGTTCTACCGCAACACAACTGATAATCACTGGGGCAGACCATACTTGACAAGGGAATTCTTTCACCGCTTGGGAGAAAAGATGGGTGACAAGGTGATGCTTATTGTTGCTGAACATGACGATAAACATGTTGCCGGGGCTCTTAACCTTATTGGAGGTGACACATTGTTTGGCCGCTTATGGGGCTGTCTGCCAGATGCTTATTTCCCCAATTTGCATTTTGAAGCTTGCTATTATCAGGCAATTGAAGCAGCTATAGAACTGAACCTGAGTAAGGTGGAGGCAGGTGCTCAAGGAGAGCACAAGATCCAGCGTGGTTACCTCCCAGTGACAACATACAGCTGCCACTACTTCTTAGATCCTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATATACTGAACGAATTTTTGCTTACACAAGGGGATGGAGTGTAG
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| Protein seq | MASPAVATRHPSPSFFGPDPRRRRGHSPSNLGFRRSGLQLKVTAIFGWIKGDTRTRELNPSAESYTLTGSASEADTKPREVSVAVVSSIMDIPSADWDACAVDSVDPDNFNPFLTHAFLSSLEESGSAVKETGWLPLHVVARDENETVVGVVPLYLKSHSRGEFVFDQSWAEAYYSYGLEYYPKLQSCVPFTPVTGQRILVRDTPYRDQVFEALVKELKSLTTKLKVSSLHITFPSEGEFSKLKDSEFLQRIGMQYHWRNRDYRSFDEFLMDLKQPKRKNIRQERKKIPAQNLKMKRLRGDEIKSEHWDTFYKFYRNTTDNHWGRPYLTREFFHRLGEKMGDKVMLIVAEHDDKHVAGALNLIGGDTLFGRLWGCLPDAYFPNLHFEACYYQAIEAAIELNLSKVEAGAQGEHKIQRGYLPVTTYSCHYFLDPGFGAAIGNYLVHETAQVKHVIKVLHDSGPYKEDILNEFLLTQGDGV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0442200 | Os04t0442200-01 | Chr04 | 22017906 | 22024024 | + | irgsp1_rep | ||
| CDS seq | ATGGCCTCGCCGGCGGTGGCGACGCGGCACCCTTCCCCCTCCTTCTTCGGCCCGGACCCTCGCCGCCGCCGCGGGCATTCGCCTTCGAATCTAGGCTTCCGAAGATCGGGATTGCAGTTAAAGGTTACTGCAATTTTTGGGTGGATTAAGGGAGACACAAGAACACGTGAATTGAACCCATCTGCTGAATCATATACGCTTACAGGGTCAGCCTCAGAGGCAGACACCAAGCCACGTGAGGTTTCTGTTGCTGTTGTTTCTTCTATTATGGACATTCCTTCAGCAGATTGGGATGCCTGTGCAGTTGATTCAGTTGATCCTGACAATTTTAATCCTTTTCTGACCCACGCATTCCTCTCAAGCTTAGAGGAATCGGGTTCTGCAGTGAAGGAAACAGGGTGGTTACCTCTGCATGTTGTTGCACGGGATGAGAATGAAACTGTCGTTGGTGTTGTCCCACTTTACCTGAAAAGCCATTCAAGGGGAGAGTTTGTATTTGATCAATCATGGGCAGAAGCTTACTATAGCTATGGACTCGAATACTACCCCAAGTTGCAGTCTTGTGTGCCTTTTACTCCAGTAACTGGTCAAAGAATATTAGTTCGAGATACACCATACAGGGATCAAGTTTTTGAAGCTTTAGTGAAAGAATTGAAGAGTTTGACTACCAAGCTGAAGGTGTCATCGTTACATATAACATTTCCATCTGAAGGTGAATTCAGCAAGTTGAAGGATAGTGAGTTCTTGCAGAGAATCGGGATGCAGTATCACTGGAGAAATCGAGATTACAGAAGTTTTGACGAGTTTTTAATGGATTTGAAGCAACCCAAACGGAAGAATATCAGACAAGAACGTAAAAAGATTCCTGCTCAAAATTTGAAAATGAAGCGACTTCGTGGAGATGAGATAAAGAGCGAGCATTGGGACACCTTTTATAAGTTCTACCGCAACACAACTGATAATCACTGGGGCAGACCATACTTGACAAGGGAATTCTTTCACCGCTTGGGAGAAAAGATGGGTGACAAGGTGATGCTTATTGTTGCTGAACATGACGATAAACATGTTGCCGGGGCTCTTAACCTTATTGGAGGTGACACATTGTTTGGCCGCTTATGGGGCTGTCTGCCAGATGCTTATTTCCCCAATTTGCATTTTGAAGCTTGCTATTATCAGGCAATTGAAGCAGCTATAGAACTGAACCTGAGTAAGGTGGAGGCAGGTGCTCAAGGAGAGCACAAGATCCAGCGTGGTTACCTCCCAGTGACAACATACAGCTGCCACTACTTCTTAGATCCTGGTTTTGGGGCAGCTATAGGAAATTATCTTGTACATGAGACGGCTCAGGTTAAACATGTTATTAAGGTCCTGCATGATTCCGGCCCATACAAGGAAGATATACTGAACGAATTTTTGCTTACACAAGGGGATGGAGTGTAG
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| Protein seq | MASPAVATRHPSPSFFGPDPRRRRGHSPSNLGFRRSGLQLKVTAIFGWIKGDTRTRELNPSAESYTLTGSASEADTKPREVSVAVVSSIMDIPSADWDACAVDSVDPDNFNPFLTHAFLSSLEESGSAVKETGWLPLHVVARDENETVVGVVPLYLKSHSRGEFVFDQSWAEAYYSYGLEYYPKLQSCVPFTPVTGQRILVRDTPYRDQVFEALVKELKSLTTKLKVSSLHITFPSEGEFSKLKDSEFLQRIGMQYHWRNRDYRSFDEFLMDLKQPKRKNIRQERKKIPAQNLKMKRLRGDEIKSEHWDTFYKFYRNTTDNHWGRPYLTREFFHRLGEKMGDKVMLIVAEHDDKHVAGALNLIGGDTLFGRLWGCLPDAYFPNLHFEACYYQAIEAAIELNLSKVEAGAQGEHKIQRGYLPVTTYSCHYFLDPGFGAAIGNYLVHETAQVKHVIKVLHDSGPYKEDILNEFLLTQGDGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0442200 | RBH | 3.705272 | 4.560671 | 3.283406 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g36062 | RBH | 1.847646 | 2.591806 | 0.566352 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014420 | RBH | 1.398916 | 10.439552 | 5.478891 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015260 | RBH | 1.138410 | 1.698387 | 2.147739 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015010 | RBH | 2.097328 | 1.173664 | 3.136070 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014580 | RBH | 0.075584 | 0.030993 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014910 | RBH | 37.031273 | 3.338732 | 20.794437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0343300 | SBH | 7.103912 | 12.17502 | 11.293153 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0339100 | RBH | 13.8408255 | 17.3759375 | 32.0825555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014370 | RBH | 1.783218 | 0.064179 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014140 | RBH | 4.275843 | 6.992013 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014110 | RBH | 17.190189 | 6.703013 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014740 | RBH | 1.404741 | 0.249758 | 2.151925 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014950 | RBH | 0.248615 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013990 | RBH | 1.492059 | 1.442010 | 4.891198 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014020 | RBH | 0.748055 | 7.572540 | 8.275982 |
