Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0442100 | OGI:04067320 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:22014111-22017058 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCCAGCCAAGCCACCTAATTAACCTAACTGTTCTCGTCCATATCTAACGACGGCCGCCTCCTCTTCCCCCTCGCCCAGCGCCGCCCCAGCGAAAGCAAAATCCCCTCCACGAACCGCGCGAAGAAAGTATTTCTCGCTCACCGGAATCCGCCGTGAACCGTGAGCAGTTGATGGGTTTCAGGGGAACCGCCGGCGCAGCACCCTCGTCCTCCCGCACGTCCGATCTGCCCCCTTCCACGCCGTGGTTCCGGGAGCTGTGGGGGGTCAACGCCGACAAATAGTAGCAGCCGCCGTCGCCGAAGGTACGCCAAATCGAGAGAGGAGGTTGGACGCTGTGCAGCGCTGTGCTATGTGTGTGTGTGTGTGTGTGTTGGGGGGGGGGGGGGGGGTGTTGATGGTGCTTCTTGGGTTAGATAGATCATAGATGGGAACGGGTATATATTGGGGATGAGGTGAAGGGGCATCGCTAGAAGAGCGAATTCTGTGTCATCAATTGTTGTGAACAAAGAAATAAGTTATGTTAGTAATCAGTAGCTGCGTATAACATGACAAAAGTATAAATCTTATTCATTACAATGCCGGAAACAAACATTAGCAGCAGCTAAGCACCAAAAATAACTTCAAGTGCAAGGAACAGTTTTTGTATTTCATGTTTTATTATTGATTTTAGGTGTCTTCTTAATGATACGCTTGTATTTGATTGATTGGCCTTTTTGCGCACATTATAGGACAGCATTGGTGGATTTCTCGATTTGCTGATTGAATCAATTAAAGCAAAGGGAGGGGCGTCCCTTCAGCAAGAGTTGGGGGCTTATTTATTTCAGTCTGATAATAAGACTTCTTTAAGAAGACTGTGCCGACTGTAAATATGTATAGGCAGAAGATACCCAATTCTGGGTGGGCTGCTTTTGATCGCAGGTGGCGCAGCAAAGATGGAAGAGGGGATGACACCGATGTCAATTCATTTCCAGCTCTCTCAGATTATATAGCCCCCAGTGCTGCTAGTAGCTCAGTTGCGGAAAACAGTAGGCCAAAAGCAAAGCCTTTTGCATCAGTGCTTCGTCCTTCTGTTGATTGTGCAGCTGATGGTAATGAAAACGGAAATAAGCATTTCACTTGTCACAGGGAGAATGCAAACTATGGTCTAAAATCTGCATCTGAAAATAAAATTGAGCTGCTGAGGGGTGCTCATAGTTGGGCCGACAGTAATTTAATTGAGGATGTACTGGCCTCTGTGAACAATGATGTTGGTGAAGCATCTGCTTTGTTGAAAGCTATGGCGTCTCCTTGTTTTCCAATAAGGGAGGATGGACTACCTGATCAGCTTTCTTCTGAGATTAATAAAACACATGGTTTACCATCAGGAAATGGTACAGCAGAAAATAATCTTGTAAATGACTCGCAGTTGTTGCCTCTGCCAATGAATATGTCGTCTGTACCCATAGAACCGGAAGTGGAAGAGCTCGATGACGATTACTTTAACCACAGGAAAGATGCATTGAAGATTATGAGGTAATACATGCAATCATCTTTTATGTTAGGTTCTCGAATTCTCTGATATTAGCATAATATTTGACTGGAGGATTTTGTATAGCAGACGCATATTGGGACTTCTTTTATTCACTGTGTTATGTTATAACATGGTGAAAGTTTGAAACTATTTTCTTATAGTAAATAGAACCCAAGCTCATGTTGTGTCAAAAGGTCGGTTCAGTGTGGACTTTGCATGTGTTAAGATCATATTTTGTTGCACAACTAGTTTCTTAGTTGCATGATTCTGATTATTGTTGTCGATGCCGATAACAGTAACACTGCAGAAGAATTGTGAACCATGAATTGCTGCTGAAAATTGTACAAACATGTTTCAACTTAAACGATGGACCATTCAGTTGAACAAAAAGGCCATTTTGATATTGAAAGAATGGGGGATACGTGAAATCTGTTTGCTGTATTTTTATAGCTGTTGTTCACGCACCTCATTTTTGTGAGGACAACTGAACCAAGTCCTTTTTGGGTAAAAAAAAATGAGACCTTTTATTTCTTTTTGGTCAATAGGGCTGCCACGAAGCATTCTCAGGCTGCGAGTAATGCTTTCTTGAGAGGTGACCATGCTGCTGCCAAGGAACTTTCCCTCAGAGCTCAAGAAGAGCGATCCGCTGCTGAAGAGCTGAACAAGAAGGCAGCAAAAGAAATATTTCGCCTCAGGAACAGCAATAATAGCATTTGGAAGCTAGACATGCATGGTCTACATGCATCAGAGGCTGTGGAAGTACTGGAACGGCATCTTCACAGGATAGAATTCCAGCCACCAGGGAATAATGCAGCTTCATCTGATGAAGTAGCTAGGTCTGAACCCAGAGTGTCTGGTCCAAGCATTGAGCCCGGCCCAGGGAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGGTAATATATCGTTTGTCCGTAGGATATGAGTCCTTTGGTTCTCTTTTTCGCTAATATGTTGTTGCAACTATGTTCGGAATTATGAACTGCCAATTTTTTGTTTAGGGGATTTTTTTTTTCATTTAGGGGATGTGGATGAATGCAATATAATCTCTTGATTTCTGTTTGCACTTTGCAGGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGCTGCGGCCTGGTGTGTTCTCTGTTCGTCCTAAATTCCGTCGCCGGTGAACCTGTGGAAGTGTGTACTGTACCGCCAAATGGAGCATTACGCTTTGTGGCATGTCATAGTTTATTTACTTTGAAATTGAATGTAACATGCAATAGTTTATTTACGTTGAAATTGAATGTAACCATTTGTAAAATGCTCAAGTTGTTTATCTAAAACAGAAAGCCAATTCAATTCTGTAACCATACGAATCGGC
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| CDS seq | ATGTATAGGCAGAAGATACCCAATTCTGGGTGGGCTGCTTTTGATCGCAGGTGGCGCAGCAAAGATGGAAGAGGGGATGACACCGATGTCAATTCATTTCCAGCTCTCTCAGATTATATAGCCCCCAGTGCTGCTAGTAGCTCAGTTGCGGAAAACAGTAGGCCAAAAGCAAAGCCTTTTGCATCAGTGCTTCGTCCTTCTGTTGATTGTGCAGCTGATGGTAATGAAAACGGAAATAAGCATTTCACTTGTCACAGGGAGAATGCAAACTATGGTCTAAAATCTGCATCTGAAAATAAAATTGAGCTGCTGAGGGGTGCTCATAGTTGGGCCGACAGTAATTTAATTGAGGATGTACTGGCCTCTGTGAACAATGATGTTGGTGAAGCATCTGCTTTGTTGAAAGCTATGGCGTCTCCTTGTTTTCCAATAAGGGAGGATGGACTACCTGATCAGCTTTCTTCTGAGATTAATAAAACACATGGTTTACCATCAGGAAATGGTACAGCAGAAAATAATCTTGTAAATGACTCGCAGTTGTTGCCTCTGCCAATGAATATGTCGTCTGTACCCATAGAACCGGAAGTGGAAGAGCTCGATGACGATTACTTTAACCACAGGAAAGATGCATTGAAGATTATGAGGGCTGCCACGAAGCATTCTCAGGCTGCGAGTAATGCTTTCTTGAGAGGTGACCATGCTGCTGCCAAGGAACTTTCCCTCAGAGCTCAAGAAGAGCGATCCGCTGCTGAAGAGCTGAACAAGAAGGCAGCAAAAGAAATATTTCGCCTCAGGAACAGCAATAATAGCATTTGGAAGCTAGACATGCATGGTCTACATGCATCAGAGGCTGTGGAAGTACTGGAACGGCATCTTCACAGGATAGAATTCCAGCCACCAGGGAATAATGCAGCTTCATCTGATGAAGTAGCTAGGTCTGAACCCAGAGTGTCTGGTCCAAGCATTGAGCCCGGCCCAGGGAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGCTGCGGCCTGGTGTGTTCTCTGTTCGTCCTAAATTCCGTCGCCGGTGA
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| Protein seq | MYRQKIPNSGWAAFDRRWRSKDGRGDDTDVNSFPALSDYIAPSAASSSVAENSRPKAKPFASVLRPSVDCAADGNENGNKHFTCHRENANYGLKSASENKIELLRGAHSWADSNLIEDVLASVNNDVGEASALLKAMASPCFPIREDGLPDQLSSEINKTHGLPSGNGTAENNLVNDSQLLPLPMNMSSVPIEPEVEELDDDYFNHRKDALKIMRAATKHSQAASNAFLRGDHAAAKELSLRAQEERSAAEELNKKAAKEIFRLRNSNNSIWKLDMHGLHASEAVEVLERHLHRIEFQPPGNNAASSDEVARSEPRVSGPSIEPGPGKVVFVRPIQAILEVITGIGKHSKGQASLPVAVRGFLIENGYRFDELRPGVFSVRPKFRRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0442100 | Os04t0442100-01 | Chr04 | 22014111 | 22017058 | + | irgsp1_rep | ||
| CDS seq | ATGTATAGGCAGAAGATACCCAATTCTGGGTGGGCTGCTTTTGATCGCAGGTGGCGCAGCAAAGATGGAAGAGGGGATGACACCGATGTCAATTCATTTCCAGCTCTCTCAGATTATATAGCCCCCAGTGCTGCTAGTAGCTCAGTTGCGGAAAACAGTAGGCCAAAAGCAAAGCCTTTTGCATCAGTGCTTCGTCCTTCTGTTGATTGTGCAGCTGATGGTAATGAAAACGGAAATAAGCATTTCACTTGTCACAGGGAGAATGCAAACTATGGTCTAAAATCTGCATCTGAAAATAAAATTGAGCTGCTGAGGGGTGCTCATAGTTGGGCCGACAGTAATTTAATTGAGGATGTACTGGCCTCTGTGAACAATGATGTTGGTGAAGCATCTGCTTTGTTGAAAGCTATGGCGTCTCCTTGTTTTCCAATAAGGGAGGATGGACTACCTGATCAGCTTTCTTCTGAGATTAATAAAACACATGGTTTACCATCAGGAAATGGTACAGCAGAAAATAATCTTGTAAATGACTCGCAGTTGTTGCCTCTGCCAATGAATATGTCGTCTGTACCCATAGAACCGGAAGTGGAAGAGCTCGATGACGATTACTTTAACCACAGGAAAGATGCATTGAAGATTATGAGGGCTGCCACGAAGCATTCTCAGGCTGCGAGTAATGCTTTCTTGAGAGGTGACCATGCTGCTGCCAAGGAACTTTCCCTCAGAGCTCAAGAAGAGCGATCCGCTGCTGAAGAGCTGAACAAGAAGGCAGCAAAAGAAATATTTCGCCTCAGGAACAGCAATAATAGCATTTGGAAGCTAGACATGCATGGTCTACATGCATCAGAGGCTGTGGAAGTACTGGAACGGCATCTTCACAGGATAGAATTCCAGCCACCAGGGAATAATGCAGCTTCATCTGATGAAGTAGCTAGGTCTGAACCCAGAGTGTCTGGTCCAAGCATTGAGCCCGGCCCAGGGAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAGGTGATCACAGGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGGGGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGCTGCGGCCTGGTGTGTTCTCTGTTCGTCCTAAATTCCGTCGCCGGTGA
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| Protein seq | MYRQKIPNSGWAAFDRRWRSKDGRGDDTDVNSFPALSDYIAPSAASSSVAENSRPKAKPFASVLRPSVDCAADGNENGNKHFTCHRENANYGLKSASENKIELLRGAHSWADSNLIEDVLASVNNDVGEASALLKAMASPCFPIREDGLPDQLSSEINKTHGLPSGNGTAENNLVNDSQLLPLPMNMSSVPIEPEVEELDDDYFNHRKDALKIMRAATKHSQAASNAFLRGDHAAAKELSLRAQEERSAAEELNKKAAKEIFRLRNSNNSIWKLDMHGLHASEAVEVLERHLHRIEFQPPGNNAASSDEVARSEPRVSGPSIEPGPGKVVFVRPIQAILEVITGIGKHSKGQASLPVAVRGFLIENGYRFDELRPGVFSVRPKFRRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0442100 | RBH | 1.272265 | 2.047407 | 1.986856 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g36058 | RBH | 0.845352 | 1.353011 | 0.502526 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014410 | RBH | 0.365182 | 12.849401 | 3.632585 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015250 | RBH | 0.070085 | 3.349196 | 2.410487 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015000 | RBH | 0.454556 | 8.422146 | 4.120912 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014570 | RBH | 0.360841 | 0.360110 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014900 | RBH | 5.412480 | 7.539515 | 4.316490 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0343300 | RBH | 7.103912 | 12.17502 | 11.293153 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0339100 | SBH | 13.8408255 | 17.3759375 | 32.0825555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014360 | RBH | 0.045221 | 0.396830 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014130 | RBH | 0.440346 | 5.533561 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014100 | RBH | 12.080858 | 9.391188 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014730 | RBH | 1.070858 | 0.711137 | 0.748242 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014940 | RBH | 0.420808 | 6.292246 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013980 | RBH | 0.721613 | 2.424830 | 2.380065 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014010 | RBH | 1.037092 | 13.082609 | 8.547248 |
