Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0429300 | OGI:04065440 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:21271609-21274073 | ||||||||
| Gene Symbol | OsbHLH145 | ||||||||||
| DNA seq | AGAAACCCATGACTGCCCCTTCACCATCGCCACCAACACACCGTTAGGCTCGACAAAGATGGGCTACTCCGACTCTAGAAAGTCTGACGAGAATTAATACCTTCGTCAAAGCCAGCAAGTCCAGTGGTGTCTAGTGATGTTGTAGAGATCAAGGAAACATGGGAAAATGTTGTCGTTGCGGATGAAGAGGGGGAAGGTGGCGAGGATGGCTTCGCTAGCGATGCTAGTGAATCTAAGTCCAAGAGCTCATCTGATGAAGTTGATTATGAGCTCTTGGATCTTTTGGCAGGTGCAAGTGAAGGATGCAGCGGAGGAAACAACAACGATGAAGTGAAAAACTTTGCCTATGCAGACCACAAGATGCATGTTTTGAGAGAGAGGGAGAGAAGGAAGGAGATGAAAAACAAGTTTGAGATTCTGCATGCCCTCATCCCCAACCTCCCAGAAAAGGTAGGATTTACAATCCTATGGGTTTGCATACAAATAAATCATTTAAGTATGTTTGAGATACTTACAATTTTATTTTTTTTCCTGGCTTGATTAGAAATTCTAGATATGTAAATAAAAGAGTATGTGCGATGTATTTGCATGTTTGTTTTCTTATGACTTGATTAAATTATCTGTTGTTCTCTGACTTCATTAAATAATCTAGATTTACATAGATAGATTATGTTGTGTTAATTGCTAGATTGTTTTTATTGTTTGATGTACAGAGATAGAATATCCTTTTTCTATTTTGCAAGGGATAGAGAGGTTTGAGCTGGCCATAACTTTTAGGTGACAACAGTTAGAATTACTTTAGATGTGTACCGTGGTCTATGACATGGTGTTTGAGTGATGGAATGGTTTTTTTCTTGTTATACAAACTATACTGCCGTGTCATGTTCAACTACATTTTAGTAACTTTTGATTAGATCTATCCATAATCCAAATCAAAATCGACATATTGCTTGCACATTCACATATTTATGTTACTAAGATGTTGTTTAAATTACTTGTATTGGATTTATGGATGTATGTACTAACTTGAATGTCATCATATTTATTAAGATAAGTAAAACCCATGACTAGTCCATAGAGTTACACGTGATGTTACTAAGGTCCATGAACATACAAAATGCACATTTAGCTCGGTTATCTTGGTTTAATCCATCACAACAGGCTCAAACCTCGCGCGGTTGACTATATGACTGGCCACTTGGCGCTTCACGCTGGCAAGATTTTTGCGTTCGCTGCCGTTCGCTCCCTCCGAAGCACAACGCGGCAGTAAATTTGCATTGACCGATCAATTGATTGTTGTTGCTATTGTTGATGTTGTTGTTGCCGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTACTTTTATGCATGTAGACTGACAAGGCCACTATAGTGGAGGCGACCATAAACTATATCAAGAACCTCCAAGACAAAATCCATAAGATGGAGATGCTCAAGGTGGAGCGCGAGCATGCCATCGCTCTCGCCACCGCCGCAACCGCCACCGCCGCTGCCTCTGCGGACACCGCGCTGCAGGCACCGCCGCCGTCGGAGGAGGAGAATGAGGAGCACGACTCCGTGGTGGCTGCAGCGACGAGGGAGATGGCCCTGGCTGACATGGTGCACGCCTGGGAGCAGCAGCAGGAGGCCGCCGCCACCGGCGGCAGCCATGGCGGCCACGCCGTGCCGCCGCCGCCGCCCGCTGCTTCGCTCCAGACGTGGACGGGGCCCAACATGACGGCGAGCCTCACCGGCGATGACGGCTTCATCACCCTCTCCCTGCCGCATCAGGGCGGCCAGAAGAACCTCGTCGCCGGCGCGGTGAGCGTCCTGGAGCGCCACCACATCGACGTCGTTACGGCCACCGTCTCGGCATCCGAGCAGGGCGACAACCTGATCAGCCTGCACTGCCATGTACGTGAATGAATCGTGTGTTCATATATCATTTGGGGTTTCTCTCCTCTGTTATTTAGCCACGTTTTAGTTGATCGCGATCGAGATCAGTACAAGCTGTGATCTAATCAAAATCTTGGTGTTTTTTTGTTTTGTCTTTGATCAAACAGCTGAGTCCAGGGAGCTCTAGCTCTCAGAACCTGACGCCTCTGGACAAGTTCAAGCTGGCAATGTCAGAGCTGATGCTTTGGGTGATCTCCGTCTGAGAAGAATGCCTATAAATGCCATGAATAAAAAAGCAAACCTTTTCTGGGTTTAGCTGCTTCCGTCGTCTTCGTCGGAATGAACAAGTCTTTGATTTGCTTCAAATTTAGTCGTCGTTGTTGAATTGAACTGCTTTAAATTTATCATTCTTCGCAAGTCTGGTTTGAGTTTTCAGACATAATAAGTTGTGTATGAGGTGGAACCTCCAGTTAATTGTCGTTTGCAGACAATGTTTGTTTCTAATAATTTGCAGTAATTGTGGGTTTGCTTATTTGGTTTGAGAG
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| CDS seq | ATGCATGTTTTGAGAGAGAGGGAGAGAAGGAAGGAGATGAAAAACAAGTTTGAGATTCTGCATGCCCTCATCCCCAACCTCCCAGAAAAGACTGACAAGGCCACTATAGTGGAGGCGACCATAAACTATATCAAGAACCTCCAAGACAAAATCCATAAGATGGAGATGCTCAAGGTGGAGCGCGAGCATGCCATCGCTCTCGCCACCGCCGCAACCGCCACCGCCGCTGCCTCTGCGGACACCGCGCTGCAGGCACCGCCGCCGTCGGAGGAGGAGAATGAGGAGCACGACTCCGTGGTGGCTGCAGCGACGAGGGAGATGGCCCTGGCTGACATGGTGCACGCCTGGGAGCAGCAGCAGGAGGCCGCCGCCACCGGCGGCAGCCATGGCGGCCACGCCGTGCCGCCGCCGCCGCCCGCTGCTTCGCTCCAGACGTGGACGGGGCCCAACATGACGGCGAGCCTCACCGGCGATGACGGCTTCATCACCCTCTCCCTGCCGCATCAGGGCGGCCAGAAGAACCTCGTCGCCGGCGCGGTGAGCGTCCTGGAGCGCCACCACATCGACGTCGTTACGGCCACCGTCTCGGCATCCGAGCAGGGCGACAACCTGATCAGCCTGCACTGCCATCTGAGTCCAGGGAGCTCTAGCTCTCAGAACCTGACGCCTCTGGACAAGTTCAAGCTGGCAATGTCAGAGCTGATGCTTTGGGTGATCTCCGTCTGA
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| Protein seq | MHVLRERERRKEMKNKFEILHALIPNLPEKTDKATIVEATINYIKNLQDKIHKMEMLKVEREHAIALATAATATAAASADTALQAPPPSEEENEEHDSVVAAATREMALADMVHAWEQQQEAAATGGSHGGHAVPPPPPAASLQTWTGPNMTASLTGDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSASEQGDNLISLHCHLSPGSSSSQNLTPLDKFKLAMSELMLWVISV |
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| Function | Transcription factor bHLH95 [UniProtKB/Swiss-Prot:Q9FXA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0429300 | Os04t0429300-01 | Chr04 | 21271609 | 21274073 | + | irgsp1_rep | ||
| CDS seq | ATGCATGTTTTGAGAGAGAGGGAGAGAAGGAAGGAGATGAAAAACAAGTTTGAGATTCTGCATGCCCTCATCCCCAACCTCCCAGAAAAGACTGACAAGGCCACTATAGTGGAGGCGACCATAAACTATATCAAGAACCTCCAAGACAAAATCCATAAGATGGAGATGCTCAAGGTGGAGCGCGAGCATGCCATCGCTCTCGCCACCGCCGCAACCGCCACCGCCGCTGCCTCTGCGGACACCGCGCTGCAGGCACCGCCGCCGTCGGAGGAGGAGAATGAGGAGCACGACTCCGTGGTGGCTGCAGCGACGAGGGAGATGGCCCTGGCTGACATGGTGCACGCCTGGGAGCAGCAGCAGGAGGCCGCCGCCACCGGCGGCAGCCATGGCGGCCACGCCGTGCCGCCGCCGCCGCCCGCTGCTTCGCTCCAGACGTGGACGGGGCCCAACATGACGGCGAGCCTCACCGGCGATGACGGCTTCATCACCCTCTCCCTGCCGCATCAGGGCGGCCAGAAGAACCTCGTCGCCGGCGCGGTGAGCGTCCTGGAGCGCCACCACATCGACGTCGTTACGGCCACCGTCTCGGCATCCGAGCAGGGCGACAACCTGATCAGCCTGCACTGCCATCTGAGTCCAGGGAGCTCTAGCTCTCAGAACCTGACGCCTCTGGACAAGTTCAAGCTGGCAATGTCAGAGCTGATGCTTTGGGTGATCTCCGTCTGA
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| Protein seq | MHVLRERERRKEMKNKFEILHALIPNLPEKTDKATIVEATINYIKNLQDKIHKMEMLKVEREHAIALATAATATAAASADTALQAPPPSEEENEEHDSVVAAATREMALADMVHAWEQQQEAAATGGSHGGHAVPPPPPAASLQTWTGPNMTASLTGDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSASEQGDNLISLHCHLSPGSSSSQNLTPLDKFKLAMSELMLWVISV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0429300 | RBH | 0.0 | 0.0 | 1.540486 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35000 | RBH | 0.0 | 0.0 | 0.372327 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0548100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013500 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014360 | RBH | 0.0 | 0.000000 | 0.359179 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014110 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014020 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0333500 | SBH | 0.0032695 | 0.013592 | 0.0321375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0330500 | SBH | 0 | 0 | 0.060877 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013070 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012990 | RBH | 0.0 | 0.0 | 0.0 |
