Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0423800 | OGI:04065140 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:20954485-20955826 | ||||||||
| Gene Symbol | prx54 | ||||||||||
| DNA seq | AGCCACAAGTATAGCTAATCAAGCTAGCTAAGCTAAGCTAAGTTAGTATAGTGTGATACCTCTTGTGAAGGTAGAGAGATCAATGGCGGCGACATTGCGTTGGGGCGGCGGCGGGCTCGCGGTGGCGGCGTTTGCGGCGGTGGTCGCGTTGTCCGGCCTCCTCGGCGTCGCGGCGAACTACGGCGGCGGCGGCGGGTTCTTGTTCCCGCAGTTCTATCAGCACACGTGCCCGCAGATGGAGGCGGTGGTGGGCGGCATCGTGGCGAGGGCGCACGCCGAGGACCCGCGCATGGCGGCGTCGCTGCTGCGGATGCACTTCCACGACTGCTTCGTGCAGGGGTGCGACGCGTCGGTGCTGCTCGACGCCGACGGCAGCGGGCGGTTCGCCACGGAGAAGCGGTCCAACCCCAACCGCGACTCGCTGCGCGGGTACGAGGTGATCGACGAGATCAAGGCCGCCCTGGAGCACGCGTGCCCGCGCACCGTCTCCTGCGCCGACATCGTCGCCGTCGCCGCCAGGGACTCCACCGCGCTCACCGGCGGGCCGTGGTGGGAGGTGCCCCTCGGCAGGCGGGACTCGCTGACGGCCAGCCTGAGCGGCTCCAACAACCTCATCCCGGCGCCCAACGACACGCTCCCCACCATCGTCGGCAAGTTCCGCAACCAGGGCCTCGACGTCGTCGACCTCGTCGCGCTCTCCGGCGGCCACACCATCGGCAACTCCCGGTGCGTCAGCTTCCGCCAGAGGCTGTACGGCCAGCTGAACAGCGACGGGAAGCCGGACTTCACCCTGAACCCGGCGTACGCGGCGGAGCTCCGGGAGCGGTGCCCGAGCTCCGGCGGCGACCAGAACCTGTTCGCGCTGGACCCGGCCAGCCAGTTCCGGTTCGACAATCAGTACTACCGCAACATCCTCGCCATGAACGGCCTCCTCAGCTCCGACGAGGTGCTCCTCACCAAGAGCCGGGAGACGATGGAGCTCGTCCACCGCTACGCCGCCAGCAACGAGCTCTTCTTCGCGCAGTTCGCCAAGTCCATGGTCAAGATGGGCAGCATCTCCCCGCTCACCGGCCACAACGGCGAGATCAGGATGAACTGCAGGAGGGTCAACCACTTCTAGAACCCTTCCACGTACGTACGGCGCCCACGGCCGATCGATGTGATGTGATGTGATCCTATTTGCTTCTTTGTGTTTTGCATGTTGATTTTATGATTTGTGTTTTGTATTTTGCTTTGCTTTGCTGCTCGCTTAATTGTTCATATTAGTTTTTTCATGTGTGTAATTCCTCCTGCAAATGTATCAAGGAATGGTCTAATAAAAGTCCATATACCAATTTGTTTC
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| CDS seq | ATGGCGGCGACATTGCGTTGGGGCGGCGGCGGGCTCGCGGTGGCGGCGTTTGCGGCGGTGGTCGCGTTGTCCGGCCTCCTCGGCGTCGCGGCGAACTACGGCGGCGGCGGCGGGTTCTTGTTCCCGCAGTTCTATCAGCACACGTGCCCGCAGATGGAGGCGGTGGTGGGCGGCATCGTGGCGAGGGCGCACGCCGAGGACCCGCGCATGGCGGCGTCGCTGCTGCGGATGCACTTCCACGACTGCTTCGTGCAGGGGTGCGACGCGTCGGTGCTGCTCGACGCCGACGGCAGCGGGCGGTTCGCCACGGAGAAGCGGTCCAACCCCAACCGCGACTCGCTGCGCGGGTACGAGGTGATCGACGAGATCAAGGCCGCCCTGGAGCACGCGTGCCCGCGCACCGTCTCCTGCGCCGACATCGTCGCCGTCGCCGCCAGGGACTCCACCGCGCTCACCGGCGGGCCGTGGTGGGAGGTGCCCCTCGGCAGGCGGGACTCGCTGACGGCCAGCCTGAGCGGCTCCAACAACCTCATCCCGGCGCCCAACGACACGCTCCCCACCATCGTCGGCAAGTTCCGCAACCAGGGCCTCGACGTCGTCGACCTCGTCGCGCTCTCCGGCGGCCACACCATCGGCAACTCCCGGTGCGTCAGCTTCCGCCAGAGGCTGTACGGCCAGCTGAACAGCGACGGGAAGCCGGACTTCACCCTGAACCCGGCGTACGCGGCGGAGCTCCGGGAGCGGTGCCCGAGCTCCGGCGGCGACCAGAACCTGTTCGCGCTGGACCCGGCCAGCCAGTTCCGGTTCGACAATCAGTACTACCGCAACATCCTCGCCATGAACGGCCTCCTCAGCTCCGACGAGGTGCTCCTCACCAAGAGCCGGGAGACGATGGAGCTCGTCCACCGCTACGCCGCCAGCAACGAGCTCTTCTTCGCGCAGTTCGCCAAGTCCATGGTCAAGATGGGCAGCATCTCCCCGCTCACCGGCCACAACGGCGAGATCAGGATGAACTGCAGGAGGGTCAACCACTTCTAG
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| Protein seq | MAATLRWGGGGLAVAAFAAVVALSGLLGVAANYGGGGGFLFPQFYQHTCPQMEAVVGGIVARAHAEDPRMAASLLRMHFHDCFVQGCDASVLLDADGSGRFATEKRSNPNRDSLRGYEVIDEIKAALEHACPRTVSCADIVAVAARDSTALTGGPWWEVPLGRRDSLTASLSGSNNLIPAPNDTLPTIVGKFRNQGLDVVDLVALSGGHTIGNSRCVSFRQRLYGQLNSDGKPDFTLNPAYAAELRERCPSSGGDQNLFALDPASQFRFDNQYYRNILAMNGLLSSDEVLLTKSRETMELVHRYAASNELFFAQFAKSMVKMGSISPLTGHNGEIRMNCRRVNHF |
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| Function | Peroxidase 72 [UniProtKB/Swiss-Prot:Q9FJZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0423800 | Os04t0423800-01 | Chr04 | 20954485 | 20955826 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGCGACATTGCGTTGGGGCGGCGGCGGGCTCGCGGTGGCGGCGTTTGCGGCGGTGGTCGCGTTGTCCGGCCTCCTCGGCGTCGCGGCGAACTACGGCGGCGGCGGCGGGTTCTTGTTCCCGCAGTTCTATCAGCACACGTGCCCGCAGATGGAGGCGGTGGTGGGCGGCATCGTGGCGAGGGCGCACGCCGAGGACCCGCGCATGGCGGCGTCGCTGCTGCGGATGCACTTCCACGACTGCTTCGTGCAGGGGTGCGACGCGTCGGTGCTGCTCGACGCCGACGGCAGCGGGCGGTTCGCCACGGAGAAGCGGTCCAACCCCAACCGCGACTCGCTGCGCGGGTACGAGGTGATCGACGAGATCAAGGCCGCCCTGGAGCACGCGTGCCCGCGCACCGTCTCCTGCGCCGACATCGTCGCCGTCGCCGCCAGGGACTCCACCGCGCTCACCGGCGGGCCGTGGTGGGAGGTGCCCCTCGGCAGGCGGGACTCGCTGACGGCCAGCCTGAGCGGCTCCAACAACCTCATCCCGGCGCCCAACGACACGCTCCCCACCATCGTCGGCAAGTTCCGCAACCAGGGCCTCGACGTCGTCGACCTCGTCGCGCTCTCCGGCGGCCACACCATCGGCAACTCCCGGTGCGTCAGCTTCCGCCAGAGGCTGTACGGCCAGCTGAACAGCGACGGGAAGCCGGACTTCACCCTGAACCCGGCGTACGCGGCGGAGCTCCGGGAGCGGTGCCCGAGCTCCGGCGGCGACCAGAACCTGTTCGCGCTGGACCCGGCCAGCCAGTTCCGGTTCGACAATCAGTACTACCGCAACATCCTCGCCATGAACGGCCTCCTCAGCTCCGACGAGGTGCTCCTCACCAAGAGCCGGGAGACGATGGAGCTCGTCCACCGCTACGCCGCCAGCAACGAGCTCTTCTTCGCGCAGTTCGCCAAGTCCATGGTCAAGATGGGCAGCATCTCCCCGCTCACCGGCCACAACGGCGAGATCAGGATGAACTGCAGGAGGGTCAACCACTTCTAG
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| Protein seq | MAATLRWGGGGLAVAAFAAVVALSGLLGVAANYGGGGGFLFPQFYQHTCPQMEAVVGGIVARAHAEDPRMAASLLRMHFHDCFVQGCDASVLLDADGSGRFATEKRSNPNRDSLRGYEVIDEIKAALEHACPRTVSCADIVAVAARDSTALTGGPWWEVPLGRRDSLTASLSGSNNLIPAPNDTLPTIVGKFRNQGLDVVDLVALSGGHTIGNSRCVSFRQRLYGQLNSDGKPDFTLNPAYAAELRERCPSSGGDQNLFALDPASQFRFDNQYYRNILAMNGLLSSDEVLLTKSRETMELVHRYAASNELFFAQFAKSMVKMGSISPLTGHNGEIRMNCRRVNHF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0423800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34630 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0553200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013330 | RBH | 0.0 | 13.524829 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028320 | SBH | 0.0 | 2.155986 | 0.511694 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013910 | RBH | 0.0 | 52.572418 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013540 | RBH | 0.0 | 1.193791 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013850 | RBH | 0.0 | 106.096138 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0331700 | RBH | 0 | 26.059971 | 0.0086545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012760 | RBH | 0.0 | 3.624021 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0528100 | SBH | 0.12892 | 46.657299 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027150 | SBH | 0.0 | 0.194882 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013010 | RBH | 0.0 | 30.829306 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013020 | RBH | 1.671914 | 188.232285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027570 | SBH | 0.000000 | 0.191441 | 0.184610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013770 | RBH | 0.0 | 74.162704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012870 | RBH | 0.0 | 5.189237 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026870 | SBH | 0.0 | 7.526243 | 1.258884 |
