Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0422950 | OGI:09005550 | 1/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:20914522-20916314 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATATAGTTATGATGTTTGGAAGACTATCTCCGAAAGCAAGCCTATTGCAGCAGCAACAAAGGCATCTACAAAAGAAGGCATCACCAAAGAGCTGTAGCATACAGAAGAAGAAGGTTTCTCCAAAAGGTAGTATCTAACTTGTTTTTTTGTGAAGTATTTTCCTTTCATATTAATGATTACAAATTTTACTTACTATAATCTAATTTTGTCTAATAGCTTAACAATCAAGAGCTTCATGGAACCCGGGACTAGAAAAGGCTTTAGTTGATTTACTTCATGAGCACAATAACCCACATTACCGGTGCCAAAACGGGTGGACAAGTGAAGCATGGAACAAGGTCGTCAAAGAATTTCGTGACAGACATCCCTATGTCACCATGAATAAGCAACAGATCCAAGATAAGGAGAAGGAGTTAAAACGAGATTATAGGTTGCTTAAGGAGGCAAGGAAACAGAGTGGAGCTTCTGGGGATAATCAGCGGTGCATGATTGTTGCCGATGATGCTGTGTGGTTGTGCGCGTAGTGGATGGTGTGTGGTTGGGCGCAACTACTATATATGTTACGCGTTATGTATATTTTGTGTAGCCATAATGTGTTGTTGTCCTGCATGTCAAATGCACTGATTATTTGTATTGCATGCCATGAATTATGCTGTTTTTGTATCTTGTGCAGTCAAATGAGAAAGTAAGGAAGTTCAGCAAAAACAAATCTTTTCCTCTCTTTGAATACCTTGGGTGAACTTTATGATGGTAAATTTACTTGATGCCATAATTCTTTGATTCCTTGTGCTTACGTTCAGTGCAGCCAACCTTGTTATTTGTTTTCTTCTCTCGTTGTTTGGCACTGCTACCTTCTTTCTTTGGCTTCTTCACATATCCTGCACCTGTACTATGTTCCTTTTGTATGATGTAGTCCTCTTAGGAAACAACAGTAACATAGCTGATTAGTTATGCATAGTGACATTTCTCATATCCGCATATTGGAAATCAATGCCAAATTATTTGGTTGCTCATGATGTTTACTAAGATTGAGGCTTTAAATGGCTGATTCTGTTTGCTAGTGAACACATTCTTTTTTGGTGCAGTATGATCAATGTTCCATTAGTTATGCATCTCCCTTCTCGGATCTAGTATTTTCCCTAATAGGTATATACTGAAACTTTGTATGGGTAGTGAATTGCAACCTTTTTTATAGGCCAAACTGCTGAGGGCAACATGAATTTCACTTCTATTGAGCCATTCCAACATGCTACTCTCATACAAGTGAATGAATATCTTGAGAGAAGTGACTCTTTTCCTGATGTAAATTGGGTTGCTGATGATGATGAGACCACTGAAGTTCAAGATGAAGATAATGCAGTGGAGCATGAAAATCAGGGAAGCCACATTACTATCACCTCAAGAGCTAATGGAGAAAAGAATGTCAAGAAGACCAAATCTACTGAGAGAGAGAGAGAGAGAGAGAGTAGAAAAGACACCGAAGAGGAATAAGAGGAATGATGTTGTTGATATGATGGAAAGTTACTTGGAGATGAGAAAAAGACAATCTGAGGAGGAGGAAGCAAAGAAGAGGGAGGAGGAAGCAAAGAAGAGGGATGAGGCAAGCAAGGTTGAAGATTGCTCAATAAGGAACTGCATCACTGTTGTGGAATCGATGGAGGAGCTCTCAAATGAAGAAAAGGTCAAATCTTTTGGAGTATTCAAGGACGTGCAGAATAGGGAGATCTTCATGAGTGCAGGGCCTATGACTCGTCTTATATGGTTAAGAACGATGCTGGTAAGTTTGAATTAC
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| CDS seq | CAATCAAGAGCTTCATGGAACCCGGGACTAGAAAAGGCTTTAGTTGATTTACTTCATGAGCACAATAACCCACATTACCGGTGCCAAAACGGGTGGACAAGTGAAGCATGGAACAAGGTCGTCAAAGAATTTCGTGACAGACATCCCTATGTCACCATGAATAAGCAACAGATCCAAGATAAGGAGAAGGAGTTAAAACGAGATTATAGGTTGCTTAAGGAGGCAAGGAAACAGAGTGGAGCTTCTGGGGATAATCAGCGGTGCATGATTGTTGCCGATGATGCTGTGTGGTTGTGCGCGTATCAAATGAGAAAGTAA |
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| Protein seq | QSRASWNPGLEKALVDLLHEHNNPHYRCQNGWTSEAWNKVVKEFRDRHPYVTMNKQQIQDKEKELKRDYRLLKEARKQSGASGDNQRCMIVADDAVWLCAYQMRK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0422950 | Os04t0422950-00 | Chr04 | 20914522 | 20916314 | + | irgsp1_rep | ||
| CDS seq | CAATCAAGAGCTTCATGGAACCCGGGACTAGAAAAGGCTTTAGTTGATTTACTTCATGAGCACAATAACCCACATTACCGGTGCCAAAACGGGTGGACAAGTGAAGCATGGAACAAGGTCGTCAAAGAATTTCGTGACAGACATCCCTATGTCACCATGAATAAGCAACAGATCCAAGATAAGGAGAAGGAGTTAAAACGAGATTATAGGTTGCTTAAGGAGGCAAGGAAACAGAGTGGAGCTTCTGGGGATAATCAGCGGTGCATGATTGTTGCCGATGATGCTGTGTGGTTGTGCGCGTATCAAATGAGAAAGTAA
More
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| Protein seq | QSRASWNPGLEKALVDLLHEHNNPHYRCQNGWTSEAWNKVVKEFRDRHPYVTMNKQQIQDKEKELKRDYRLLKEARKQSGASGDNQRCMIVADDAVWLCAYQMRK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0422950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g38960 | SBH | 0.535137 | 1.046695 | 0.581372 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0481800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0361200 | SBH | 10.651913 | 10.5139695 | 7.258012 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0365200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027390 | SBH | 0.564117 | 3.325069 | 9.932290 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
