Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0422900 | OGI:09005370 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:20911398-20914480 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAGGCGGCGCGAGGTCCGGGAGGCGGCTCTAGGGTGGAGATCCAGGAGCAGCATATCTCCAGCCGCTGCCGCTCTCCATCCCGCCCTCGGTCGCCGACGATCTCCATCCAGCTTCAGCCGCCACCGGTCTCCATCCCGTCCTCAGCCGCCGCCGGTCTCCATCCCGCTTTAGCCGCCGCCACCGCTCTCCTTCCCGCTCTCCATCCCAGCCAGTCGCCGGCGCTCGCCATCTCTCCTTCCTCGCTTCGGATTCACCGGTTGCGGGAGAGGGCAAGGTCGAGGGCAACAGCCCGGACACCAAGAAGCAAGTCTGATTCTTGATCTCCTCTTTTCCCACTCAGAAAAGATTTTGTGACTTATCTAGTGGATGAATTTGTTGCTAGTTGATGTATTGAGTGGCTGTATGGATTGAAGTATCAGTCATGTTCTGCTTAGAAGGAGGGGTGATGTGGTTTGTAGTAGTAGAACCTGAAACCACAGAAAATTCCATGCACATCTCTATGTGTGTGCGCAAATCTTGCCTATCAGTTGCTCTGTAATCAAGGAAATATATATTTGAATTGGCAGATCCTATATTTCTGAACATGGGCTCTCTTCTTTCTTTTCTTTTTTTTTTGTGAGGGAGAAACCTGGTTTGTTGATTCTCCAGGAATTATTGTAGATGCAGTGGGAGCACACCTAAAAAATAAAAACTAGTGCACTCTGTTGTTGCTGTCTAGAATGCATCACTTTGCTTTTGGCCAAGGTCATTTGAGCTTCAGATTGAACGACCAATACTATATGCCAATTGAATGAGCAAGAAGATACAAAATTTTTTAAAGTCATGCTATGAGGTGGTCAGGTGGACACTGTAGTATACATTCTAGTTTTGGTAATTTTTTCCATGGCTTTTTGTTTAGCAAAATGCCCTTGTTAAAACTTGAGAAATGTAGCTGTCCATCTTTTGTTCGAATACCTATTTTACTCTTAGCAATCAATTTAGCATATTTATCTATTCTGAACTGCTACTATGTTCACAACTAGTTTTAGGAAACTGGGTGTTCAGATATATTACTAGAGGTCATACCATACAAAGCTATATAAATTGCTATTGAATGACAAAAATATAATCTGTTGTGCTGAATTAAATTTCAGGAGAGGCACAGGCGTGTGGGGTTGGCAAAAGTAAAGCTGAAGGAGTTGATATTACTCAAGGTATTTGAGAAAAAACTAAATACAGTTGTACTTACATTTGCCTGATATGAAGCATTTAATCTTGCCCTTGCATATTTACTAGAGTAACAGAAGTAATTTGAAGTTGGAGAGAGAGAGAGAGAGATTGTAGGTACAATGTTATGTGATCTTGCTCAGGTGGCAGATGGTCTCAGTTTTTTTTTGCTAGTGAACAGGAGGTTGTTATTTTCAAGTAAACATCCTACCCTAGAAGGATATCCTCACTTTATTAAAGTTGCTATCTCTGAGGTTTAAACAAAACTAAGTACACAAAGTACTTCTGGAACTAGTCAAAATCTGAACACATTATTGATCCCCCTCCTCCCATTGCAATCTGTTTATTTGCTGAAAGTATTAAAAGTATTTATGCATGTAGCCACCTTGAATGCCTCTAATTTCATGTTTAATAATATTGTAATACATATGCATATTATTATGTTCTCACACATAGTTTAAAGTATAGTAATTCTATATCTCTTTTAGTGATAAAATCAGTTCGAGAATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTACGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAACTTGGGATATTTATGTTCATGCTCGCCCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATTGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGGTGAATCTGGCACTCAAACTAGAAATGAATATCTATTCCTTTTCCAATTAAATAACTCATGCATATTCTGTCCTTTTCTTCCCTTTTTGCTGCAAAATTGCATAGGGGCTATTGATGGCACTCACATTTCTATAACTATAGATGGAGAGAAGGCAACTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCACATTTCATTACTCCTTATCGTGGTGTTCGGTACCATCTAAAGGAGTTTGGACGTGGTCATCGTCGACCTAGAGACTACAAGGAGTTATTCAATCATCGCCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAAGCGATTTCCCATCCTGAAAGTAGGCACTTTCCATCGGATAAAGAACCAAGTGCGGATTCCAGCAACTGCTGCGGTGTTCCACAACATGATCCGGTTGCCTAATGGTGATGAGGGCTGGTTGGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAGTGAATACCCAAATGATGTGCCATCTCTTAGCAATAAAATGATCAGTGGGAATAATATTAGAGATATGATTGCTAAGAAGATGTGGGAAGATTATGTTCGTAACTAGCAAGAATAGTATAGATAATATTTTGGTTTTGCATGATTTGTATTTATTTATGCAATCAACATTTATGATATGGACAAATTAATAGT
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| CDS seq | ATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTACGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAACTTGGGATATTTATGTTCATGCTCGCCCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATTGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTTCTATAACTATAGATGGAGAGAAGGCAACTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTGGGTCCTTAGATCAGCAATGA
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| Protein seq | MADEIKRRREEDDDMMLFVFPAMYMLCGTTNSEKIPRHISRLSGKERLQEILEGHVMDCKVAFRMEPHVFKTIANYLREEKLLKDSRGLRIEEKLGIFMFMLAHNASFQDLQYEFKHSGSTLHWHIKSIFKIIPALTYRFLKLPHADQTHWKIRTNPRFFPYFKNCIGAIDGTHISITIDGEKATPYRNRKGTLSQNVMVACDFDLNFTFISCGWEGSATDAGSLDQQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0422900 | Os04t0422900-00 | Chr04 | 20911398 | 20914480 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTACGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAACTTGGGATATTTATGTTCATGCTCGCCCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATTGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTTCTATAACTATAGATGGAGAGAAGGCAACTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTGGGTCCTTAGATCAGCAATGA
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| Protein seq | MADEIKRRREEDDDMMLFVFPAMYMLCGTTNSEKIPRHISRLSGKERLQEILEGHVMDCKVAFRMEPHVFKTIANYLREEKLLKDSRGLRIEEKLGIFMFMLAHNASFQDLQYEFKHSGSTLHWHIKSIFKIIPALTYRFLKLPHADQTHWKIRTNPRFFPYFKNCIGAIDGTHISITIDGEKATPYRNRKGTLSQNVMVACDFDLNFTFISCGWEGSATDAGSLDQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0422900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0894100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0005640 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0006530 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0006370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0491000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0329500 | SBH | 0 | 0.083586 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0006450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005790 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0006250 | RBH | 0.0 | 0.0 | 0.0 |
