Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0247700 | OGI:12033660 | 1/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:9571289-9572114 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTGGTCAGGCTGCCCATGACCACCTAAATCCACAGTATCTACATCAGAAAAGGAGACTTCAAATTTTTCATCATATGCTTTTTTCATTTCTTCAAATTTATCATTCATTTCTTTCTTTAATTCTTTAAGTATTTCTTCTTTCAATTCTTTTTTAATTTGGGGGGATGCTTCTTCAAATTTTTCAATTATTTTCCAATCGATATATTCGCCATCCAAAGGATCTACTCCCTTAGTCAAGCATTCCTTATACGTAGGTTTTTGGGATGATCCTTCATTCTTAATATTTGAACAATATGGGTTCTCTGGAGCTTTCTTATTTTTGGCTTTTTTGCATTTTTGTATATATTCTTTTGCTGCTGGTTCCAAGTAGTAGTTTATTCCTAATATTTTTCTGGCTTGAGTTAAAGCTTCATCAATATCTATATATTTTTTCCATGACAATCCACCCATTAATTTTGCATCTATTTTTTGGGCTACTATCTCTTCAAAAGATATGTACACTCCAGGAAGCTTTCCGTCAAAAACAACATATATGGGTTTTTGCTGTATTACTTCATTATTTTCTGATGTTGGCATTATATCATTTATTAGATGGAAATATTCAGCAAGACTGTTTAATATTGATAGCATATAGCCTTTTTCTTCCCTCTTATTATTGTATTGATACCAGAAATTATCTAAAATGCATTCTTGGACTTCATCTAATATTATGTGGGTTTTTGGCTTAAACTTATAGGTATTCGGTGGGAATACTTTGAGCTTATTGTCTTCTCCAAACGTGAAGAACTCAACTCCACTATAATTCATGGACTTCTTCATTCCT
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| CDS seq | ATGAAGAAGTCCATGAATTATAGTGGAGTTGAGTTCTTCACGTTTGGAGAAGACAATAAGCTCAAAGTATTCCCACCGAATACCTATAAGTTTAAGCCAAAAACCCACATAATATTAGATGAAGTCCAAGAATGCATTTTAGATAATTTCTGGTATCAATACAATAATAAGAGGGAAGAAAAAGGCTATATGCTATCAATATTAAACAGTCTTGCTGAATATTTCCATCTAATAAATGATATAATGCCAACATCAGAAAATAATGAAGTAATACAGCAAAAACCCATATATGTTGTTTTTGACGGAAAGCTTCCTGGAGTGTACATATCTTTTGAAGAGATAGTAGCCCAAAAAATAGATGCAAAATTAATGGGTGGATTGTCATGGAAAAAATATATAGATATTGATGAAGCTTTAACTCAAGCCAGAAAAATATTAGGAATAAACTACTACTTGGAACCAGCAGCAAAAGAATATATACAAAAATGCAAAAAAGCCAAAAATAAGAAAGCTCCAGAGAACCCATATTGTTCAAATATTAAGAATGAAGGATCATCCCAAAAACCTACGTATAAGGAATGCTTGACTAAGGGAGTAGATCCTTTGGATGGCGAATATATCGATTGGAAAATAATTGAAAAATTTGAAGAAGCATCCCCCCAAATTAAAAAAGAATTGAAAGAAGAAATACTTAAAGAATTAAAGAAAGAAATGAATGATAAATTTGAAGAAATGAAAAAAGCATATGATGAAAAATTTGAAGTCTCCTTTTCTGATGTAGATACTGTGGATTTAGGTGGTCATGGGCAGCCTGACCAATAA
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| Protein seq | MKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFKPKTHIILDEVQECILDNFWYQYNNKREEKGYMLSILNSLAEYFHLINDIMPTSENNEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGLSWKKYIDIDEALTQARKILGINYYLEPAAKEYIQKCKKAKNKKAPENPYCSNIKNEGSSQKPTYKECLTKGVDPLDGEYIDWKIIEKFEEASPQIKKELKEEILKELKKEMNDKFEEMKKAYDEKFEVSFSDVDTVDLGGHGQPDQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0247700 | Os04t0247700-00 | Chr04 | 9571289 | 9572114 | - | irgsp1_rep | ||
| CDS seq | ATGAAGAAGTCCATGAATTATAGTGGAGTTGAGTTCTTCACGTTTGGAGAAGACAATAAGCTCAAAGTATTCCCACCGAATACCTATAAGTTTAAGCCAAAAACCCACATAATATTAGATGAAGTCCAAGAATGCATTTTAGATAATTTCTGGTATCAATACAATAATAAGAGGGAAGAAAAAGGCTATATGCTATCAATATTAAACAGTCTTGCTGAATATTTCCATCTAATAAATGATATAATGCCAACATCAGAAAATAATGAAGTAATACAGCAAAAACCCATATATGTTGTTTTTGACGGAAAGCTTCCTGGAGTGTACATATCTTTTGAAGAGATAGTAGCCCAAAAAATAGATGCAAAATTAATGGGTGGATTGTCATGGAAAAAATATATAGATATTGATGAAGCTTTAACTCAAGCCAGAAAAATATTAGGAATAAACTACTACTTGGAACCAGCAGCAAAAGAATATATACAAAAATGCAAAAAAGCCAAAAATAAGAAAGCTCCAGAGAACCCATATTGTTCAAATATTAAGAATGAAGGATCATCCCAAAAACCTACGTATAAGGAATGCTTGACTAAGGGAGTAGATCCTTTGGATGGCGAATATATCGATTGGAAAATAATTGAAAAATTTGAAGAAGCATCCCCCCAAATTAAAAAAGAATTGAAAGAAGAAATACTTAAAGAATTAAAGAAAGAAATGAATGATAAATTTGAAGAAATGAAAAAAGCATATGATGAAAAATTTGAAGTCTCCTTTTCTGATGTAGATACTGTGGATTTAGGTGGTCATGGGCAGCCTGACCAATAA
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| Protein seq | MKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFKPKTHIILDEVQECILDNFWYQYNNKREEKGYMLSILNSLAEYFHLINDIMPTSENNEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGLSWKKYIDIDEALTQARKILGINYYLEPAAKEYIQKCKKAKNKKAPENPYCSNIKNEGSSQKPTYKECLTKGVDPLDGEYIDWKIIEKFEEASPQIKKELKEEILKELKKEMNDKFEEMKKAYDEKFEVSFSDVDTVDLGGHGQPDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0247700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g17500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0260900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0111200 | SBH | 0.1601045 | 0.1890575 | 0.092886 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0111700 | SBH | 0.566731 | 2.4938545 | 0.0935135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
