Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0208400 | OGI:04023590 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:7254765-7256866 | ||||||||
| Gene Symbol | OsFbox187, Os_F0245, OsFbox188, Os_F0182, OsFbox189, Os_F0133 | ||||||||||
| DNA seq | CCTCTGTGGAATGGCACTTGTTGGCTAGAATAAACTTGCTACTAAATTAAAGCTAATCGTACTACACTACTAATGAGACCAAAAACCCTGTCCAGTCTTGAGCACATGCCAACAACAAAAAACAATGCCTTGCATGTGGAGATGTAGATACACCTATCCTGCAAACATAACACTAACAACTTTCAGAGAAACTGAGCTTGGATGGATCACATATGTAGGCACCTCTGGTTCCTAGTACACAAAAGGGTCACGGATAGAATAATCTGATCCTCTCTGAAAGCTCCAAATCAGACCACCTTCTGAGTCATCGCTCCTATAGACCTGCATTGAAGAGATCTTACTGGCCCATCTCACAGATTTGAGGATCTTCGCTGTCCAGAGCGTATCAATGGAGTATGAAGTGAATTGTGGATTGGCCAACACCACAGCCACATTCTTCACCATCTGCGCATTCTGGACGAAGTACTTCAGGAAGGATATCGCGTTGGCCTCCCCTTTGAATTCACGGAATGTAAGCACATTGACATGGGACACGATGCTTTCGATTGGGCCAGCATCATCCCAGAAATTGGGGCTTACCAAGCTGGTGGCTTCAGAACATTTTGCACACTGCAGAAATGGTTAAATCAGTAAATGTTTCAGAGTTCAGCTAGCAACTAATTGATCATGCAGTAGCACAAGAAGGCAATGAGGCAGGTTCAATTCATACCACAACATGCAGGGACTCAGCATTGGGAAAGCATTTGAGGAAGTTGGGCAGCATCTGGGCATCATGCCTGACTCCAAAATTCACATTCAACCCCAGGATCTTGACGCTCGTGAACAATGCGCTTGGGCTCGACCTGATCCCAGCCTGAAATCCATTAAGATGGAAATGGATTGTTCAGATATTCAAATATCAGAATTTGGGACATCAGCAATTCAGAATCAGAGTGAACAAACAAACTGAACAGTAAGAGGTTAGAGATGATGGCAATGGCATACGCACACTGACAAAGGTGTCATGGATCTCCAGCATGTGGAATCCTGTCTCCAAGTTTCCCAACAAGCGCAGCCTGGGGGCATGGACGATCTTGACCCTGACGCAGGAGTCATCCTTGCTCAAAGAATCATAGAGCACGAGCCGCTCGAGGCATGGCGCGTCCACCACGGCGAGATTCTCCACGCAACACGAGCAGATCTGCACGCAACGAAGGCTCCGGTGCTCCAGGCGGAGGCGCAACACCTGCGTGTTGCCTCCTTGGATGTTGAGGGTCTCCAGCACGGGGGATCTCGCCACGATGAACTCGACCTCGCGGCCCTCCTTCTCCATGGCGACGGCGTAGATGCCGAGCTCGCGAAGGTTGGGGAAGGCGGTGTTGGTGGGGAGGCCGGCAATGTCGGGGAACTTCCACATGCCGATGTAGAGGCGGGTGAGGGTGGAGATGCGGAGGATGGCGGCAGGGAGAGCCGCCTCGAACGGCCATGGGCGGTTGACGAGGATGAGGTCGTCGACGCCCTTGGCGGCGAGGAACCGGAGCCAGTGCTCGAGCTGGGCCTGGTACGATCCCATGAAGCCGCAGAGGAGGTGGACGCAGCGGAATGGCCCCGGGTGCGCGGCGAGGATGCGGGACACGGCGGCGACGATGCCCGGCGTGTCGGCGCGCGTCGGGGCAGAGGCGGAGACACCGAAGCTTCGACCTCGCGGGAAGAGGTGGGCGTCCACGAGGACGAGCGGCGTGGAGCGCCAGAGCGGGCGCCAGCGGCGGGAGAGCGCGGCGGTGCGCGCGGCGTCCTTGACGGGGAGGCGGGAGACGATGTTGCGGAGGATCGCGTCGGGGAGGGCGCTGATGCGGTCGACGCCGTCGGAGGCTGCGGCGGCGCAGGCGGCGTGGGTGCGGGCGGCGGCGATGGGTACGGGTGGGCCAGGGAGCAACCCGTAGATGTGCGTCATCAAGTACTTGGTGCACTCCTCCAGCTTGCGCGGGTCGTCGCCGCGGCGGCGCGCTTCCGCCACCGTGGCGGGGTCAAGGTAGATGATCGGCGCACCTTCCGCCATGGATTCCGACGACGCCGCCGGCTAGGGTTTGGTTTGGGGTTCTGGACGGCGGCGACGAGTCACT
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| CDS seq | ATGGCGGAAGGTGCGCCGATCATCTACCTTGACCCCGCCACGGTGGCGGAAGCGCGCCGCCGCGGCGACGACCCGCGCAAGCTGGAGGAGTGCACCAAGTACTTGATGACGCACATCTACGGGTTGCTCCCTGGCCCACCCGTACCCATCGCCGCCGCCCGCACCCACGCCGCCTGCGCCGCCGCAGCCTCCGACGGCGTCGACCGCATCAGCGCCCTCCCCGACGCGATCCTCCGCAACATCGTCTCCCGCCTCCCCGTCAAGGACGCCGCGCGCACCGCCGCGCTCTCCCGCCGCTGGCGCCCGCTCTGGCGCTCCACGCCGCTCGTCCTCGTGGACGCCCACCTCTTCCCGCGAGGTCGAAGCTTCGGTGTCTCCGCCTCTGCCCCGACGCGCGCCGACACGCCGGGCATCGTCGCCGCCGTGTCCCGCATCCTCGCCGCGCACCCGGGGCCATTCCGCTGCGTCCACCTCCTCTGCGGCTTCATGGGATCGTACCAGGCCCAGCTCGAGCACTGGCTCCGGTTCCTCGCCGCCAAGGGCGTCGACGACCTCATCCTCGTCAACCGCCCATGGCCGTTCGAGGCGGCTCTCCCTGCCGCCATCCTCCGCATCTCCACCCTCACCCGCCTCTACATCGGCATGTGGAAGTTCCCCGACATTGCCGGCCTCCCCACCAACACCGCCTTCCCCAACCTTCGCGAGCTCGGCATCTACGCCGTCGCCATGGAGAAGGAGGGCCGCGAGGTCGAGTTCATCGTGGCGAGATCCCCCGTGCTGGAGACCCTCAACATCCAAGGAGGCAACACGCAGGTGTTGCGCCTCCGCCTGGAGCACCGGAGCCTTCGTTGCGTGCAGATCTGCTCGTGTTGCGTGGAGAATCTCGCCGTGGTGGACGCGCCATGCCTCGAGCGGCTCGTGCTCTATGATTCTTTGAGCAAGGATGACTCCTGCGTCAGGGTCAAGATCGTCCATGCCCCCAGGCTGCGCTTGTTGGGAAACTTGGAGACAGGATTCCACATGCTGGAGATCCATGACACCTTTGTCAGTGCTGGGATCAGGTCGAGCCCAAGCGCATTGTTCACGAGCGTCAAGATCCTGGGGTTGAATGTGAATTTTGGAGTCAGGCATGATGCCCAGATGCTGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAATGTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAAGCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGATATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGTTGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCAAATCTGTGAGATGGGCCAGTAAGATCTCTTCAATGCAGGTCTATAGGAGCGATGACTCAGAAGGTGGTCTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTGTGTACTAG
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| Protein seq | MAEGAPIIYLDPATVAEARRRGDDPRKLEECTKYLMTHIYGLLPGPPVPIAAARTHAACAAAASDGVDRISALPDAILRNIVSRLPVKDAARTAALSRRWRPLWRSTPLVLVDAHLFPRGRSFGVSASAPTRADTPGIVAAVSRILAAHPGPFRCVHLLCGFMGSYQAQLEHWLRFLAAKGVDDLILVNRPWPFEAALPAAILRISTLTRLYIGMWKFPDIAGLPTNTAFPNLRELGIYAVAMEKEGREVEFIVARSPVLETLNIQGGNTQVLRLRLEHRSLRCVQICSCCVENLAVVDAPCLERLVLYDSLSKDDSCVRVKIVHAPRLRLLGNLETGFHMLEIHDTFVSAGIRSSPSALFTSVKILGLNVNFGVRHDAQMLPNFLKCFPNAESLHVVCAKCSEATSLVSPNFWDDAGPIESIVSHVNVLTFREFKGEANAISFLKYFVQNAQMVKNVAVVLANPQFTSYSIDTLWTAKILKSVRWASKISSMQVYRSDDSEGGLIWSFQRGSDYSIRDPFVY |
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| Function | F-box/LRR-repeat protein At3g26922 [UniProtKB/Swiss-Prot:Q9LJF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0208400 | Os04t0208400-01 | Chr04 | 7254765 | 7256866 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGAAGGTGCGCCGATCATCTACCTTGACCCCGCCACGGTGGCGGAAGCGCGCCGCCGCGGCGACGACCCGCGCAAGCTGGAGGAGTGCACCAAGTACTTGATGACGCACATCTACGGGTTGCTCCCTGGCCCACCCGTACCCATCGCCGCCGCCCGCACCCACGCCGCCTGCGCCGCCGCAGCCTCCGACGGCGTCGACCGCATCAGCGCCCTCCCCGACGCGATCCTCCGCAACATCGTCTCCCGCCTCCCCGTCAAGGACGCCGCGCGCACCGCCGCGCTCTCCCGCCGCTGGCGCCCGCTCTGGCGCTCCACGCCGCTCGTCCTCGTGGACGCCCACCTCTTCCCGCGAGGTCGAAGCTTCGGTGTCTCCGCCTCTGCCCCGACGCGCGCCGACACGCCGGGCATCGTCGCCGCCGTGTCCCGCATCCTCGCCGCGCACCCGGGGCCATTCCGCTGCGTCCACCTCCTCTGCGGCTTCATGGGATCGTACCAGGCCCAGCTCGAGCACTGGCTCCGGTTCCTCGCCGCCAAGGGCGTCGACGACCTCATCCTCGTCAACCGCCCATGGCCGTTCGAGGCGGCTCTCCCTGCCGCCATCCTCCGCATCTCCACCCTCACCCGCCTCTACATCGGCATGTGGAAGTTCCCCGACATTGCCGGCCTCCCCACCAACACCGCCTTCCCCAACCTTCGCGAGCTCGGCATCTACGCCGTCGCCATGGAGAAGGAGGGCCGCGAGGTCGAGTTCATCGTGGCGAGATCCCCCGTGCTGGAGACCCTCAACATCCAAGGAGGCAACACGCAGGTGTTGCGCCTCCGCCTGGAGCACCGGAGCCTTCGTTGCGTGCAGATCTGCTCGTGTTGCGTGGAGAATCTCGCCGTGGTGGACGCGCCATGCCTCGAGCGGCTCGTGCTCTATGATTCTTTGAGCAAGGATGACTCCTGCGTCAGGGTCAAGATCGTCCATGCCCCCAGGCTGCGCTTGTTGGGAAACTTGGAGACAGGATTCCACATGCTGGAGATCCATGACACCTTTGTCAGTGCTGGGATCAGGTCGAGCCCAAGCGCATTGTTCACGAGCGTCAAGATCCTGGGGTTGAATGTGAATTTTGGAGTCAGGCATGATGCCCAGATGCTGCCCAACTTCCTCAAATGCTTTCCCAATGCTGAGTCCCTGCATGTTGTGTGTGCAAAATGTTCTGAAGCCACCAGCTTGGTAAGCCCCAATTTCTGGGATGATGCTGGCCCAATCGAAAGCATCGTGTCCCATGTCAATGTGCTTACATTCCGTGAATTCAAAGGGGAGGCCAACGCGATATCCTTCCTGAAGTACTTCGTCCAGAATGCGCAGATGGTGAAGAATGTGGCTGTGGTGTTGGCCAATCCACAATTCACTTCATACTCCATTGATACGCTCTGGACAGCGAAGATCCTCAAATCTGTGAGATGGGCCAGTAAGATCTCTTCAATGCAGGTCTATAGGAGCGATGACTCAGAAGGTGGTCTGATTTGGAGCTTTCAGAGAGGATCAGATTATTCTATCCGTGACCCTTTTGTGTACTAG
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| Protein seq | MAEGAPIIYLDPATVAEARRRGDDPRKLEECTKYLMTHIYGLLPGPPVPIAAARTHAACAAAASDGVDRISALPDAILRNIVSRLPVKDAARTAALSRRWRPLWRSTPLVLVDAHLFPRGRSFGVSASAPTRADTPGIVAAVSRILAAHPGPFRCVHLLCGFMGSYQAQLEHWLRFLAAKGVDDLILVNRPWPFEAALPAAILRISTLTRLYIGMWKFPDIAGLPTNTAFPNLRELGIYAVAMEKEGREVEFIVARSPVLETLNIQGGNTQVLRLRLEHRSLRCVQICSCCVENLAVVDAPCLERLVLYDSLSKDDSCVRVKIVHAPRLRLLGNLETGFHMLEIHDTFVSAGIRSSPSALFTSVKILGLNVNFGVRHDAQMLPNFLKCFPNAESLHVVCAKCSEATSLVSPNFWDDAGPIESIVSHVNVLTFREFKGEANAISFLKYFVQNAQMVKNVAVVLANPQFTSYSIDTLWTAKILKSVRWASKISSMQVYRSDDSEGGLIWSFQRGSDYSIRDPFVY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0208400 | RBH | 0.130768 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g13150 | RBH | 0.076154 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004280 | RBH | 0.0 | 0.0 | 1.040619 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004940 | RBH | 0.0 | 0.0 | 0.788730 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004480 | RBH | 0.0 | 0.0 | 1.432227 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004430 | RBH | 0.000000 | 0.000000 | 0.538836 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0106200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004490 | RBH | 0.0 | 0.0 | 0.146149 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0113600 | RBH | 0 | 0 | 0.191248 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004240 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004660 | RBH | 0.0 | 0.0 | 0.625297 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004390 | RBH | 0.0 | 0.0 | 0.0 |
