Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0200700 | OGI:04022070 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:6869662-6872863 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTCAACCTCTCCCGATCTCTTTCTCTTCCTATTCTTTTATGTTACCAAATTAAAAGCAAGAAAAGCTATAATTTTAGTATTAAGGTGACCATAATTTTAAATGTACATATCTAATTTCTATTCTATCTAAATTGTTCCTGTATTTATAATTAAATTGACAATTTTAGATCCAATGTTTTGCTATACATAAGTAATATGTCATTGTGGTCTTCTTAACGTCTGGTATTCTCGGAGGCATTCGGATGGGCGATTTCTGGTGATCTTCAATGGTGACTCCGGCACCGCCGGGAGGGTGGAATTTCTCTCCCGGGGATGCAATCTGCGATGAAGCTTGGCATTGTTTCCGACCGCCGGTTCATTTCTCCTCTAAGTTCAGCTCGGTTCCTTTCCGGTTAGTGGTGGATCTACCTCGCTCAAATTTTCGTTTAACAACTTCTTCGGTGGCCTTAGCCCTCAGGGCTGTGATTGGTGGTTCGCCTGCTGATCTCTCTGTTTCCCTTCTCAAAGATCGTTCTTTCTCTTTTTTTTGTCTGCTCCAAACAAGTGGGTTTATGGATTTATCGTTTGAGATCTTATACTTGCAATGATTTTGTTCTGCGCTTCTTTCTTTGGAGAAATGGTGGACCAAATTGGTAGTGGGAACTTGATGTTTAGAGTCGTGAACAAGAGAAAGAATGGGTTTTTGTGGCTCCTAAGAAACGTGTTTCTGATTCTTTGAGGCAACCTGGTCGTTCTTATGCTCAAGCTACTCAGCAGCGGGTTATTCCTATGAAGAGTGTTTTTGATAGATTAAAGGAGTCCTTGAAGGTGACTGGCGGTGATACTCCGGCAATCACTGTTCCGGTGACCAAAGTTCCGGAGACTAAGCTGGTGGCTAATCCCAAAATTCAAAATGTTAGAGGTAATCGGGATCAACTTTCTAAGCAAGTTTTAAATTCTAATTTAATTTGTGGGCGTTGCTCAGAGAAGGGTCATTCTTTGTCTGTTTGTGTTGGGCCCTTTCGGTGCCGAATTTGTAAGAGTTCGGGTCATGCTGCCCGTTTCTGTAGCTCAAAGCAATCTCCCTCTGAGGGTAAATTGCCAAAGTCTGTTTCTACCCCCCGCATTAATGCAGTTGCTACGGTCCTAAACTCCCGGGGTAATTGCAATCTTGTTTGGAGACCTAAAAAGCTTGCGCCGGTTATCTCGTAGCCTTCTCGCCTTCTCCAATCTACTGTTGAGAATATTGTTCAAGCCTCCCCAGCCCAAAGTTCCATGCCAATGGCAGACCTCAACCCTAACCCTCATCGTTTCCGCCATCAAGGTCACATTGTGCATTTGGGAGGAAATTTGCGTGTCCCTAGAGTTGATCTCACCATCCCTCAAAGGCCTGTTCGAGTTTTGTGTTGCTTTGGTGGAGCCGCCGGTGTCGGAGCAAGATTGGGATCACCACCGCATGCTAATTCTTCATCACATTCTTGATGAGCGTCTTTTTGAGGTCAGAAATAGCTACCGTCATGCTTCTGCGGTGGGTATGTATCAACTCCATTCTGCTATGCATAGAGATGCCCTGGTCCATAGTGGGCCGTTTGTTTATGATGGAGTGCATTCGGTAACTTTTGTGAAGCATGATCAAGGCCCAAATTGGAGAGCATCTCAATGCCATAGAGAGGGTTGGTTCCTTTTCTTGGATTACCACCTTGACTTTATTGATTGGGACCATCTAAACCTTGCTACGGCTACATTTGGCCAACTTTCTTTTTGGCTTGAAAGGGATCAGATCAAGGGGAGAGTTCTGATAAGGGCTAAGTTAAAGGATAATGATTTTGTGCCTCCAAAAATTGTTTTTGCATGATCCGGTGGGTATGGGCGGAGGAGGAGAATCATGGACAGTTTCCGTGTTTTTGTTGGAAGGGGATTTCATTAACATGGCTCCTGATGAAGATCTGCCCCCTGCGGGCCCCCAACCAAATCCTAATGGTCTAGATGATGATGATGATCCTAATGTGGGCAACATTTGGCAGATGGGGCAGCCTCCTGTTGGTCCAGGTGACTGGGATGATTTGGTCCAACAGCAGCAAGCTGCAGAGGCTGAGGTAGAGGATGCTTGGGGCTAAGACTATCCAATGGGCCAAGTAATGGAGGTAAATCCTGATGGTCTGCTTGCTTTGGTACCTATTGTTTCAGAGGATGCTAGCCCTTCTGTTCCTGCTGTTGCTATGCCTAATAGGGGGAAAAAGGTTCAGGACCCAGTCCAAGACCCGAAGATCCAGGAATTCTTAGCTAACTTGGATAAACTGACTAGAAGTGAATATCCTAGACACCCTTATTTTTATCCAATGTCTGGCCTGAATGAGAAGATTGACCTCTTGTGCAAAGAAAAGGGAACCATGCACCAATTTCTTGCTTCTAGTTCTGTTCCTGCTGCCATAGATGTGGTCAATCCTTTTACTGCTCTTGTTTTGCCCAAAAAGACAATGTTTGATTTTTCTCCCTTAGTGGGTCAAGAGACAAGTGTTTGGGCTCCGGATTCAACAAAGTCTGATGTTGGCCCCCTGGAGGCCTAGACCCAAGCTGCTATGGAAGTACTTGATGTCATGCCCTTGTCTATTCAGCCTCCCTTCAGCCCAGTTTGTGAAGCACCAGCTCTTCCTGTGTTACCTAAGGCTCCAATTAAGAAAAGAGATGTCAAAACTTTGCTTTATAACCCTTACAGGAGGCAGAGTGCAAGGTTGCAGCAGAATAAGGAGGAAGCAGAACTGCAAGTGGATCCCAGAATGGACATTGGCAAGCCAAGGGGTAAATCTGCAAAGAAATTGAAAGAGCTTGCAGGCTTGCAGGTATAGCAAAAATCTTTGATGATAGTAGCATTAAAGAGTCTGATTTTACTAAAAGTGCCTATGATGATATTCATTCTGATTCCTTTCCATCTGATTGTTCTATCTCATTGTTGCAAAAGATGGGAGTGGACATGTGCGGCTTAACTCCTGAGGAGGAAGTTGAATCCAGCATGGGGAGTGAGAGAAGAAAGAAGATGCCCAGGCCTGACATGGAGGAAAAATGATTTTAGTTTTCAGATGTGTTTTAGTAGACCTGTACTTCCCTTTTAATTATCATGTAAGGGTCTGTATTTGGAACTTCCCTTTTAATTATCATGTAAGGGTCTGTATTTGGACAAGAGCTTTTCAGACTTTGTCATATTTTGGTTCAGTTGTATGCACT
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| CDS seq | ATGATTTTGTGCCTCCAAAAATTGTTTTTGCATGATCCGGTGGGTATGGGCGGAGGAGGAGAATCATGGACAGTTTCCGTGTTTTTGTTGGAAGGGGATTTCATTAACATGGCTCCTGATGAAGATCTGCCCCCTGCGGGCCCCCAACCAAATCCTAATGGTCTAGATGATGATGATGATCCTAATGTGGGCAACATTTGGCAGATGGGGCAGCCTCCTGTTGGTCCAGGTGACTGGGATGATTTGGTCCAACAGCAGCAAGCTGCAGAGGCTGAGGTAGAGGATGCTTGGGGCTAA |
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| Protein seq | MILCLQKLFLHDPVGMGGGGESWTVSVFLLEGDFINMAPDEDLPPAGPQPNPNGLDDDDDPNVGNIWQMGQPPVGPGDWDDLVQQQQAAEAEVEDAWG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0200700 | Os04t0200700-01 | Chr04 | 6869662 | 6872863 | + | irgsp1_rep | ||
| CDS seq | ATGATTTTGTGCCTCCAAAAATTGTTTTTGCATGATCCGGTGGGTATGGGCGGAGGAGGAGAATCATGGACAGTTTCCGTGTTTTTGTTGGAAGGGGATTTCATTAACATGGCTCCTGATGAAGATCTGCCCCCTGCGGGCCCCCAACCAAATCCTAATGGTCTAGATGATGATGATGATCCTAATGTGGGCAACATTTGGCAGATGGGGCAGCCTCCTGTTGGTCCAGGTGACTGGGATGATTTGGTCCAACAGCAGCAAGCTGCAGAGGCTGAGGTAGAGGATGCTTGGGGCTAA
More
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| Protein seq | MILCLQKLFLHDPVGMGGGGESWTVSVFLLEGDFINMAPDEDLPPAGPQPNPNGLDDDDDPNVGNIWQMGQPPVGPGDWDDLVQQQQAAEAEVEDAWG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0200700 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g26340 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0330400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0016170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0101600 | RBH | 0.0189625 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0016010 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003950 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010850 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0016010 | RBH | 0.0 | 0.0 | 0.0 |
