Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0194000 | OGI:04020570 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:6454698-6456042 | ||||||||
| Gene Symbol | OsFbox184, Os_F0197 | ||||||||||
| DNA seq | GAAAAAGATTGGCAAACCAGCTACTGCATATTACATAGTTCAGCAGGGTTTGAGTACATTTTAGCAAGGTGACATCCCACAAGATAACAGTGTCCACAACCTCTAAAAGACAGCACCAAAAGTTGCTACCCACCAGGATGAAAAGAAACCATCTCAAGACGAGTCCAACAACTAGCAAAGCCGCTCCAGCATCAGATGAAAGGTCGAGCATTCACGACATAACCCTTTAACAATGGAAAGAATGCATGTGGAACAAGGCTTTGCTTAAGCTTCAGAGGAGTATTGTAGTGGCACCCAACATCATGTTGAAAACTCGCCAACAGCTTGCCATCAGTACCAATGTAAAGCAGCCATTGTCTGTAGTAAACCAGCACAAGCACATCCCCGTCCTCAGACAATACCATCGCACTCCAATCATCACCATCATCAAGCTTCCCCTTTATATCTGGGACTGGCAATTCAATCCGGTGCTTGAGAGACCAGAATTCTGTCTTGTAATCCTGCAGTACCCAAATATCTACGATCGTCGCATCATCATTACAGAAGTAGATGCCAAGTGTACCATCAATCTCAAACAGATCATTCCCATTCATCTTGTCAGCCTGACGCATCGACCAGAACGACTCGGATGCGGTGTTGAAAATCAAAATCTTGTCTGTTTTGTAATTATACCAATGCAGGCTACCATGGAGCAGCACAACAGCTGTGCAGGTTGCAACCTCCTCCATCCACCCAATGCACCTCGGCATTTCGCTGGAGCCCAATGTGTAGACGTAGCAGGCATATCTATCCTCAGAACCTTCCGGCCGAAACTGGTAGTAGAGTAGAAGCCGGTATTCACCGGTGGGGCGGTGCTGGTAAAACCCCATGACGAAGAAACCAGTGAGCATCGGCAGATCAGCGAATTGACGAGTGGTCGGGTTACAGACCGAGTAGTAAAATTCGCCGCAGTTGGTCATGTTGAGGATAAGGATGCCGTCGCAGGATGCACTCACGAAGTGAGCGGCGTTCTTGAGCCGCACCACGGGATGGAGCCGCGGCCGAGCGGCGTCCCGGCGGTCAAGGGTGAGGATGTCGAGGAGGCTCCCACCGTCGCAGCCGTAGCCGACGACGAGCGGGAGGGAGGGTTGATGGCGGTGGTGGGCGAGGAGGAAGCCGCGGGTGGAGGTGAGGCGGCGCCATGCGCGGCAGACCAAGCGGCAGCGGAGGAGGGGTTTAGGGGGAAGCCGTACCAGGATCTCCCAGACCACGAGCTCCTCCGGGAGGCCGCGGCGGCGCGGCGGTAGCGCTGATCTTGTCGCCATGGTCGCCGCAGGGAGTTGTCGCGGCGGCGGAGTGGACGGTT
More
|
||||||||||
| CDS seq | ATGGCGACAAGATCAGCGCTACCGCCGCGCCGCCGCGGCCTCCCGGAGGAGCTCGTGGTCTGGGAGATCCTGGTACGGCTTCCCCCTAAACCCCTCCTCCGCTGCCGCTTGGTCTGCCGCGCATGGCGCCGCCTCACCTCCACCCGCGGCTTCCTCCTCGCCCACCACCGCCATCAACCCTCCCTCCCGCTCGTCGTCGGCTACGGCTGCGACGGTGGGAGCCTCCTCGACATCCTCACCCTTGACCGCCGGGACGCCGCTCGGCCGCGGCTCCATCCCGTGGTGCGGCTCAAGAACGCCGCTCACTTCGTGAGTGCATCCTGCGACGGCATCCTTATCCTCAACATGACCAACTGCGGCGAATTTTACTACTCGGTCTGTAACCCGACCACTCGTCAATTCGCTGATCTGCCGATGCTCACTGGTTTCTTCGTCATGGGGTTTTACCAGCACCGCCCCACCGGTGAATACCGGCTTCTACTCTACTACCAGTTTCGGCCGGAAGGTTCTGAGGATAGATATGCCTGCTACGTCTACACATTGGGCTCCAGCGAAATGCCGAGGTGCATTGGGTGGATGGAGGAGGTTGCAACCTGCACAGCTGTTGTGCTGCTCCATGGTAGCCTGCATTGGTATAATTACAAAACAGACAAGATTTTGATTTTCAACACCGCATCCGAGTCGTTCTGGTCGATGCGTCAGGCTGACAAGATGAATGGGAATGATCTGTTTGAGATTGATGGTACACTTGGCATCTACTTCTGTAATGATGATGCGACGATCGTAGATATTTGGGTACTGCAGGATTACAAGACAGAATTCTGGTCTCTCAAGCACCGGATTGAATTGCCAGTCCCAGATATAAAGGGGAAGCTTGATGATGGTGATGATTGGAGTGCGATGGTATTGTCTGAGGACGGGGATGTGCTTGTGCTGGTTTACTACAGACAATGGCTGCTTTACATTGGTACTGATGGCAAGCTGTTGGCGAGTTTTCAACATGATGTTGGGTGCCACTACAATACTCCTCTGAAGCTTAAGCAAAGCCTTGTTCCACATGCATTCTTTCCATTGTTAAAGGGTTATGTCGTGAATGCTCGACCTTTCATCTGA
More
|
||||||||||
| Protein seq | MATRSALPPRRRGLPEELVVWEILVRLPPKPLLRCRLVCRAWRRLTSTRGFLLAHHRHQPSLPLVVGYGCDGGSLLDILTLDRRDAARPRLHPVVRLKNAAHFVSASCDGILILNMTNCGEFYYSVCNPTTRQFADLPMLTGFFVMGFYQHRPTGEYRLLLYYQFRPEGSEDRYACYVYTLGSSEMPRCIGWMEEVATCTAVVLLHGSLHWYNYKTDKILIFNTASESFWSMRQADKMNGNDLFEIDGTLGIYFCNDDATIVDIWVLQDYKTEFWSLKHRIELPVPDIKGKLDDGDDWSAMVLSEDGDVLVLVYYRQWLLYIGTDGKLLASFQHDVGCHYNTPLKLKQSLVPHAFFPLLKGYVVNARPFI |
||||||||||
| Function | F-box protein At5g49610 [UniProtKB/Swiss-Prot:Q9FGY4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0194000 | Os04t0194000-01 | Chr04 | 6454698 | 6456042 | - | irgsp1_rep | ||
| CDS seq | ATGGCGACAAGATCAGCGCTACCGCCGCGCCGCCGCGGCCTCCCGGAGGAGCTCGTGGTCTGGGAGATCCTGGTACGGCTTCCCCCTAAACCCCTCCTCCGCTGCCGCTTGGTCTGCCGCGCATGGCGCCGCCTCACCTCCACCCGCGGCTTCCTCCTCGCCCACCACCGCCATCAACCCTCCCTCCCGCTCGTCGTCGGCTACGGCTGCGACGGTGGGAGCCTCCTCGACATCCTCACCCTTGACCGCCGGGACGCCGCTCGGCCGCGGCTCCATCCCGTGGTGCGGCTCAAGAACGCCGCTCACTTCGTGAGTGCATCCTGCGACGGCATCCTTATCCTCAACATGACCAACTGCGGCGAATTTTACTACTCGGTCTGTAACCCGACCACTCGTCAATTCGCTGATCTGCCGATGCTCACTGGTTTCTTCGTCATGGGGTTTTACCAGCACCGCCCCACCGGTGAATACCGGCTTCTACTCTACTACCAGTTTCGGCCGGAAGGTTCTGAGGATAGATATGCCTGCTACGTCTACACATTGGGCTCCAGCGAAATGCCGAGGTGCATTGGGTGGATGGAGGAGGTTGCAACCTGCACAGCTGTTGTGCTGCTCCATGGTAGCCTGCATTGGTATAATTACAAAACAGACAAGATTTTGATTTTCAACACCGCATCCGAGTCGTTCTGGTCGATGCGTCAGGCTGACAAGATGAATGGGAATGATCTGTTTGAGATTGATGGTACACTTGGCATCTACTTCTGTAATGATGATGCGACGATCGTAGATATTTGGGTACTGCAGGATTACAAGACAGAATTCTGGTCTCTCAAGCACCGGATTGAATTGCCAGTCCCAGATATAAAGGGGAAGCTTGATGATGGTGATGATTGGAGTGCGATGGTATTGTCTGAGGACGGGGATGTGCTTGTGCTGGTTTACTACAGACAATGGCTGCTTTACATTGGTACTGATGGCAAGCTGTTGGCGAGTTTTCAACATGATGTTGGGTGCCACTACAATACTCCTCTGAAGCTTAAGCAAAGCCTTGTTCCACATGCATTCTTTCCATTGTTAAAGGGTTATGTCGTGAATGCTCGACCTTTCATCTGA
More
|
|||||||
| Protein seq | MATRSALPPRRRGLPEELVVWEILVRLPPKPLLRCRLVCRAWRRLTSTRGFLLAHHRHQPSLPLVVGYGCDGGSLLDILTLDRRDAARPRLHPVVRLKNAAHFVSASCDGILILNMTNCGEFYYSVCNPTTRQFADLPMLTGFFVMGFYQHRPTGEYRLLLYYQFRPEGSEDRYACYVYTLGSSEMPRCIGWMEEVATCTAVVLLHGSLHWYNYKTDKILIFNTASESFWSMRQADKMNGNDLFEIDGTLGIYFCNDDATIVDIWVLQDYKTEFWSLKHRIELPVPDIKGKLDDGDDWSAMVLSEDGDVLVLVYYRQWLLYIGTDGKLLASFQHDVGCHYNTPLKLKQSLVPHAFFPLLKGYVVNARPFI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0194000 | RBH | 0.090760 | 0.0 | 0.887312 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11790 | RBH | 0.056503 | 0.0 | 0.210276 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003740 | RBH | 0.0 | 1.486859 | 2.584425 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004260 | RBH | 0.175859 | 0.736076 | 0.218372 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003780 | RBH | 0.0 | 1.596723 | 2.033313 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003750 | RBH | 1.440931 | 4.737316 | 0.778223 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0094600 | RBH | 0.7655785 | 2.103965 | 4.660232 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003880 | RBH | 0.0 | 0.0 | 0.083798 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0098100 | RBH | 0.7527025 | 1.3144035 | 6.0985695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003710 | RBH | 0.0 | 0.138522 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003940 | RBH | 0.124847 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003640 | RBH | 0.000000 | 0.229739 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004000 | RBH | 0.0 | 0.0 | 0.197035 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003750 | RBH | 0.0 | 0.0 | 1.075039 |
