Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0191800 | OGI:04020000 | 7/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:6262588-6264062 | ||||||||
| Gene Symbol | OsFbox182, Os_F0223, F-box118 | ||||||||||
| DNA seq | AATTCAATCAAGACGTAGTAGGTTTTGCATTATAAGTCACAATGAACCAACTATTCATGTGGCCAAATACAATTATTGTATCCTGGTTGCACATTCATCTACAATAAGTTCAGCTAAGAAGTTTTCATACATAAAAGCACAATTCAGAAAATAATAAGTTTGTGTGCTCAAACTTCATTTAGCAGACATCAGATGAAAGGCAAATCATTCACGACATAACTTTTTAGCAACGGAAAGAATGCATGTGGAACAAGGCTTTGTTTAAGCTTCATACGAGTAACCATGATGTCATTACCATCATGTTCGAGACGCGCCAACAGCTTGCCGTCAGTATCAAAGCAAAGCACCGATTGTCCGCAATCAACCAGCACAACCACAACCTCATCCCCATCCTCGGACGAAACCATCACACTCCAAGAATCACCCACGTCAAGTTCCCCCCTGATACATGTAACCGGCAATTCAACCTGGTACTTGATGGACCAGACCTCTTGCTCGTAATCCTGCAGAGCCCAGATATTTACAATCGTCTTGTCATGATTACAGCAGTACAAGCCAAGTGTAGAATCCATCTCAAGCACATCTGCCCAGAGTTCCCGGTTCAATTCATTCTCCGTCTTGTCAATGGGCGCGCGCATCCACCGGAATGACTCGGCCGTGGTATCGAACACCAGAATCATATGTTTGATGCTATGGTACCAATGCAGCAGGCTGCCATGAAGCTGGGCAGGTCTGCAGCGTCTGCTGTGGCCGGCTAACATGGACACCTCTGGCTCTGCCCAACCGATGCGCCTGGGCATGTCGTTGGAGCCCAATGTGTAGACGTAGCTGGCATCTCTCTCGACATGCCCAGGAATCAGATCTTCCAACACCACCTTCTCAGCTCGGTAGAGCAGAATCCGGTAGTCGCCGGTGGGGCTGTGCTGGTACAACCCCAAGAACATGAATCCGGAGATCAGCGGGAGGTCACCGAATTGGCGCGTGGTCGGGTTACAGATGGAGTATTGCGGGGGGCCGGTGTTCCGGGAGATGAGAAGGAGTCCATCGCAGGACGAATCCAGGTAGTCGGCGGTGCTGGCGTACCGGGCGACCGGATGGAGCCGCGCGGCGGCGCCCCTGCGGCGGCCGAGGGTGAGGGTGAGGACGTCGATGAGGTACATAATATCGGCGTAGTCGCAGGCGGCGATGAGGGGGAGGGAGGGCTGGTGGCGGTGGTGGGCGAGGAGGAAGTCGCGGGTGGATGTGAGGCGGCGCCATGCGCGGCAGACCAAGCGGCAGCGGAGGAGGGGCTTGGGGGGTAGGCGTACCAGGATCTCCCAGACCACGAGCTCCTCCGGGAGCGGGAGGCCGGGGCTCACCGGCGGCAGCCCTCGCGTTGCCGCCTCCGCCATGGTCGCCGTCGCGGCAGCGGCGGTGGAGCCGTGGAAGGAGGTGAGGCGAGGCGACCTTTTTCCCTTTTTTGAGAGGGGAAAGGC
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| CDS seq | ATGGCGGAGGCGGCAACGCGAGGGCTGCCGCCGGTGAGCCCCGGCCTCCCGCTCCCGGAGGAGCTCGTGGTCTGGGAGATCCTGGTACGCCTACCCCCCAAGCCCCTCCTCCGCTGCCGCTTGGTCTGCCGCGCATGGCGCCGCCTCACATCCACCCGCGACTTCCTCCTCGCCCACCACCGCCACCAGCCCTCCCTCCCCCTCATCGCCGCCTGCGACTACGCCGATATTATGTACCTCATCGACGTCCTCACCCTCACCCTCGGCCGCCGCAGGGGCGCCGCCGCGCGGCTCCATCCGGTCGCCCGGTACGCCAGCACCGCCGACTACCTGGATTCGTCCTGCGATGGACTCCTTCTCATCTCCCGGAACACCGGCCCCCCGCAATACTCCATCTGTAACCCGACCACGCGCCAATTCGGTGACCTCCCGCTGATCTCCGGATTCATGTTCTTGGGGTTGTACCAGCACAGCCCCACCGGCGACTACCGGATTCTGCTCTACCGAGCTGAGAAGGTGGTGTTGGAAGATCTGATTCCTGGGCATGTCGAGAGAGATGCCAGCTACGTCTACACATTGGGCTCCAACGACATGCCCAGGCGCATCGGTTGGGCAGAGCCAGAGGTGTCCATGTTAGCCGGCCACAGCAGACGCTGCAGACCTGCCCAGCTTCATGGCAGCCTGCTGCATTGGTACCATAGCATCAAACATATGATTCTGGTGTTCGATACCACGGCCGAGTCATTCCGGTGGATGCGCGCGCCCATTGACAAGACGGAGAATGAATTGAACCGGGAACTCTGGGCAGATGTGCTTGAGATGGATTCTACACTTGGCTTGTACTGCTGTAATCATGACAAGACGATTGTAAATATCTGGGCTCTGCAGGATTACGAGCAAGAGGTCTGGTCCATCAAGTACCAGGTTGAATTGCCGGTTACATGTATCAGGGGGGAACTTGACGTGGGTGATTCTTGGAGTGTGATGGTTTCGTCCGAGGATGGGGATGAGGTTGTGGTTGTGCTGGTTGATTGCGGACAATCGGTGCTTTGCTTTGATACTGACGGCAAGCTGTTGGCGCGTCTCGAACATGATGGTAATGACATCATGGTTACTCGTATGAAGCTTAAACAAAGCCTTGTTCCACATGCATTCTTTCCGTTGCTAAAAAGTTATGTCGTGAATGATTTGCCTTTCATCTGA
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| Protein seq | MAEAATRGLPPVSPGLPLPEELVVWEILVRLPPKPLLRCRLVCRAWRRLTSTRDFLLAHHRHQPSLPLIAACDYADIMYLIDVLTLTLGRRRGAAARLHPVARYASTADYLDSSCDGLLLISRNTGPPQYSICNPTTRQFGDLPLISGFMFLGLYQHSPTGDYRILLYRAEKVVLEDLIPGHVERDASYVYTLGSNDMPRRIGWAEPEVSMLAGHSRRCRPAQLHGSLLHWYHSIKHMILVFDTTAESFRWMRAPIDKTENELNRELWADVLEMDSTLGLYCCNHDKTIVNIWALQDYEQEVWSIKYQVELPVTCIRGELDVGDSWSVMVSSEDGDEVVVVLVDCGQSVLCFDTDGKLLARLEHDGNDIMVTRMKLKQSLVPHAFFPLLKSYVVNDLPFI |
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| Function | F-box protein CPR1 [UniProtKB/Swiss-Prot:Q9SU30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0191800 | Os04t0191800-01 | Chr04 | 6262588 | 6264062 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGAGGCGGCAACGCGAGGGCTGCCGCCGGTGAGCCCCGGCCTCCCGCTCCCGGAGGAGCTCGTGGTCTGGGAGATCCTGGTACGCCTACCCCCCAAGCCCCTCCTCCGCTGCCGCTTGGTCTGCCGCGCATGGCGCCGCCTCACATCCACCCGCGACTTCCTCCTCGCCCACCACCGCCACCAGCCCTCCCTCCCCCTCATCGCCGCCTGCGACTACGCCGATATTATGTACCTCATCGACGTCCTCACCCTCACCCTCGGCCGCCGCAGGGGCGCCGCCGCGCGGCTCCATCCGGTCGCCCGGTACGCCAGCACCGCCGACTACCTGGATTCGTCCTGCGATGGACTCCTTCTCATCTCCCGGAACACCGGCCCCCCGCAATACTCCATCTGTAACCCGACCACGCGCCAATTCGGTGACCTCCCGCTGATCTCCGGATTCATGTTCTTGGGGTTGTACCAGCACAGCCCCACCGGCGACTACCGGATTCTGCTCTACCGAGCTGAGAAGGTGGTGTTGGAAGATCTGATTCCTGGGCATGTCGAGAGAGATGCCAGCTACGTCTACACATTGGGCTCCAACGACATGCCCAGGCGCATCGGTTGGGCAGAGCCAGAGGTGTCCATGTTAGCCGGCCACAGCAGACGCTGCAGACCTGCCCAGCTTCATGGCAGCCTGCTGCATTGGTACCATAGCATCAAACATATGATTCTGGTGTTCGATACCACGGCCGAGTCATTCCGGTGGATGCGCGCGCCCATTGACAAGACGGAGAATGAATTGAACCGGGAACTCTGGGCAGATGTGCTTGAGATGGATTCTACACTTGGCTTGTACTGCTGTAATCATGACAAGACGATTGTAAATATCTGGGCTCTGCAGGATTACGAGCAAGAGGTCTGGTCCATCAAGTACCAGGTTGAATTGCCGGTTACATGTATCAGGGGGGAACTTGACGTGGGTGATTCTTGGAGTGTGATGGTTTCGTCCGAGGATGGGGATGAGGTTGTGGTTGTGCTGGTTGATTGCGGACAATCGGTGCTTTGCTTTGATACTGACGGCAAGCTGTTGGCGCGTCTCGAACATGATGGTAATGACATCATGGTTACTCGTATGAAGCTTAAACAAAGCCTTGTTCCACATGCATTCTTTCCGTTGCTAAAAAGTTATGTCGTGAATGATTTGCCTTTCATCTGA
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| Protein seq | MAEAATRGLPPVSPGLPLPEELVVWEILVRLPPKPLLRCRLVCRAWRRLTSTRDFLLAHHRHQPSLPLIAACDYADIMYLIDVLTLTLGRRRGAAARLHPVARYASTADYLDSSCDGLLLISRNTGPPQYSICNPTTRQFGDLPLISGFMFLGLYQHSPTGDYRILLYRAEKVVLEDLIPGHVERDASYVYTLGSNDMPRRIGWAEPEVSMLAGHSRRCRPAQLHGSLLHWYHSIKHMILVFDTTAESFRWMRAPIDKTENELNRELWADVLEMDSTLGLYCCNHDKTIVNIWALQDYEQEVWSIKYQVELPVTCIRGELDVGDSWSVMVSSEDGDEVVVVLVDCGQSVLCFDTDGKLLARLEHDGNDIMVTRMKLKQSLVPHAFFPLLKSYVVNDLPFI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0191800 | RBH | 0.496015 | 1.174733 | 1.415938 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11450 | RBH | 0.334298 | 0.789321 | 0.363259 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003630 | RBH | 0.057310 | 3.632566 | 2.368385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004160 | SBH | 0.237027 | 2.561781 | 0.545430 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003680 | SBH | 0.285717 | 0.0 | 3.159131 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003760 | RBH | 0.016724 | 0.028729 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003680 | SBH | 1.712249 | 1.820239 | 6.803564 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0093300 | SBH | 0.0316575 | 0.4331095 | 0.3024605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003780 | RBH | 0.033433 | 0.138377 | 0.546915 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0094100 | SBH | 1.399276 | 6.8235005 | 5.890034 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003600 | SBH | 0.031123 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003840 | SBH | 0.000000 | 3.187945 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003650 | RBH | 0.854452 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003550 | RBH | 0.066809 | 0.086527 | 0.240648 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003700 | RBH | 0.084273 | 1.943489 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003890 | SBH | 0.0 | 0.967468 | 0.136636 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003690 | SBH | 0.344507 | 1.432785 | 1.850873 |
