Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0189400 | OGI:04019610 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:6053705-6054979 | ||||||||
| Gene Symbol | DEFL9, OsDEFL9, OsDf-09, Df-09 | ||||||||||
| DNA seq | GAATCGAATTGGGGTTAATTATCTTCAACAAAAGAAAAAACAATACAATTAATACTCAAACCACAAAAAATAGAAAGAAAAGATTACATGAAACAGAAAATTGTTACAGGTAGTATTGTAGCCGAGATGAATGAAAACCTTCTGGCTCTATTAGAGAGAAGGTTTATTCATTGAAGCATGCAAGATAGATAGGTTGCAATTTTGCGCAGTTATTTGGATTAACCACTTGACTAGCAATCCTTGGTACACATGCAGCGGCGCCGGAAGCCGCTGCACTTGCCTCCGGAGAAGCCCTCAGTCAGGCACACGTTGGCGCAGTTGGCCACCATCATGCAGATCCCCTTGAACTCGTTGCTTGGCGTCTCGCACTCCCTTGCCTGTGCAGCTGGTACCATCTCAAACAACAAAATATTAACATGGCTAAAACATGAAATCATGGTTTTTCATCCATATATACCAGACCAGATAAGTCGTCCTAATAATACACCATGTCAACTGAATATGTGTTATAGTATTTCTACCACTAGCGGAAGTCACAAAATTGAAATTTAATGATGTTGGAATGTATGTGACACTGACGCAAAAAGTTAGAAGCCAAAAAATATTAGGCCAAAAATCCTTTCAATTTTTGGTAGACGAAAGAAAACAAAATCTGGTATTATGATCTATACACATGAATATATGGATTGTCCCACCAAAAATTTCAATCGAAAGGAAGGGGTCAAATTAGGTAGTTGGTTCTAAATATATGTGATTTCGGACTTAACCAGATCATATTTAGAATAATAACTCGCAAACTGAATTTCATAAAGTGCTATACATATAGGATGACATGACAGAATGGAACTATTGGTTGTTCTATTGTTTATTCAGCAAAGTTCAGTGGTTTCTCCCAAACTAATTATGTCGTCTCTTTATATTTCTTCAGTATCAAAACTTATTAGGTATGTGCCAAACATAAAGAGGCAGCAGATGGTGTAAACAATTTCCGTTATCTAAGAAAATGAACAAAAAGCTGGAACATGGAAAAGGATGTAAACCACATGTAGCTAACTCAGATATGTATATATATACTCCTACTGTACCTGTGGTGACAACGAGCAGGAGGAGAACTACAATTGTTGGGAAGAACTTGCGTGATGTCTCCATTTTGATCGATTTGTCTTTGTGTTGATGATCAAATTTGGCACTAGTATTGAATCCCTTGTAACTATGATAATTGAAGTGATTGTGGCGAGGTTTATATATAAAGAGAGCCAATATCATGCAAGTAAC
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| CDS seq | ATGATATTGGCTCTCTTTATATATAAACCTCGCCACAATCACTTCAATTATCATAGTTACAAGGGATTCAATACTAGTGCCAAATTTGATCATCAACACAAAGACAAATCGATCAAAATGGAGACATCACGCAAGTTCTTCCCAACAATTGTAGTTCTCCTCCTGCTCGTTGTCACCACAGCTGCACAGGCAAGGGAGTGCGAGACGCCAAGCAACGAGTTCAAGGGGATCTGCATGATGGTGGCCAACTGCGCCAACGTGTGCCTGACTGAGGGCTTCTCCGGAGGCAAGTGCAGCGGCTTCCGGCGCCGCTGCATGTGTACCAAGGATTGCTAG |
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| Protein seq | MILALFIYKPRHNHFNYHSYKGFNTSAKFDHQHKDKSIKMETSRKFFPTIVVLLLLVVTTAAQARECETPSNEFKGICMMVANCANVCLTEGFSGGKCSGFRRRCMCTKDC |
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| Function | Defensin J1-2 [UniProtKB/Swiss-Prot:O65740] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0189400 | Os04t0189400-01 | Chr04 | 6053705 | 6054979 | - | irgsp1_rep | ||
| CDS seq | ATGATATTGGCTCTCTTTATATATAAACCTCGCCACAATCACTTCAATTATCATAGTTACAAGGGATTCAATACTAGTGCCAAATTTGATCATCAACACAAAGACAAATCGATCAAAATGGAGACATCACGCAAGTTCTTCCCAACAATTGTAGTTCTCCTCCTGCTCGTTGTCACCACAGCTGCACAGGCAAGGGAGTGCGAGACGCCAAGCAACGAGTTCAAGGGGATCTGCATGATGGTGGCCAACTGCGCCAACGTGTGCCTGACTGAGGGCTTCTCCGGAGGCAAGTGCAGCGGCTTCCGGCGCCGCTGCATGTGTACCAAGGATTGCTAG
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| Protein seq | MILALFIYKPRHNHFNYHSYKGFNTSAKFDHQHKDKSIKMETSRKFFPTIVVLLLLVVTTAAQARECETPSNEFKGICMMVANCANVCLTEGFSGGKCSGFRRRCMCTKDC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0189400 | RBH | 0.0 | 0.0 | 56.706139 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11130 | RBH | 0.0 | 0.0 | 20.231428 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0189800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003530 | RBH | 0.0 | 0.0 | 38.483410 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004060 | RBH | 0.0 | 0.0 | 37.100559 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003580 | RBH | 0.0 | 0.0 | 79.170357 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003610 | RBH | 0.0 | 0.0 | 185.287506 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0089100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003690 | RBH | 0.150308 | 0.0 | 30.798689 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0090600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003570 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003500 | RBH | 0.0 | 0.0 | 7.998734 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003630 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003810 | RBH | 0.0 | 0.0 | 18.479925 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003610 | RBH | 0.0 | 0.0 | 181.979050 |
