Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0177100 | OGI:04017340 | 4/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:5246846-5247861 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTCGCCTCTTGATTCCGTGGGGAGCAAAGCCGATTCCGGCGCCGGCGCCGTCGACGCCACCACCACGAGGTTCGTCGCGGTCGGTGGCCTGTAGAACGGCACCACCTCGAACCGCGTGTAGCACGTCAGCGAGTAGGCACGCCCTCCTCTCGTCCTGCACCGCAACCATGTCCATGCAAGCTTAGGTTGTATTTGGTCGGGCTATGGCTTTTAAAAAATTAGCTGTAGACTGTAGCATTTTAAAAAGTAACTATGAAATATGGGCTGTGATTTTTGAAAAAGCTCATTTGAGGATGCCCACCCCAGCATTGCAGTCTCAATGTCAATCCTTACATGGGCAGCGACGCCGCGATGCTCTGGAGGCAGCGGCGGCAGTCGTCCGGCGAGAGGTCGTCGACGCACTGCACGAACGCGTAGAGGCTGTCGCCGCCGTCGCCGGTGATGTTCGTCTGCCCGAACGCGAACCGCCGGCCACGGGAAGACGACGACGACGACGCGGCGGCGAGCGCGAGGCGGTCCATGAGCCGGCTGAGCGCGGCGCCGAACTGGGCGGCGTCGCCGGCGCTCGTCATGTTGGGGTTGTAGAACGAGAACTCCTGGGCCATGTCCGGCCGCGCCAGGAACGGCGCGCCGCCGGCGTACCGGAGCAGGCAGTTGTTGTACAGCATGGCGCCGCCCACGGCGCGCGGGCAGGCGAGCGACAGGTTGCCCGCCGCCATGGCCAGGCAGAGCCGGCACACCTCCGGCGGCGCGTCGGCGTAGCAGATGGCGAGGCCGTGCGCGGCGCCGCCGGCGTCGTTGGCCACCGCGTATCCACCGCCGGACACCGCGGCGTCGACGACGTCCTTCAGCACGCCGCGGAGGCTCGTGCCGTAGGCGCTCCCGGCGGTGTAGTTCTGCGGCGAGCACTCCGACCACACCTGCACCGTCTGCGCGAACGCCGGTGGCGTGGTGCGCGCGACGCAGACGACGGCGACGACGATGGCGAGGAGCACGGCGAGGTTGGAATCCAT
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| CDS seq | ATGGATTCCAACCTCGCCGTGCTCCTCGCCATCGTCGTCGCCGTCGTCTGCGTCGCGCGCACCACGCCACCGGCGTTCGCGCAGACGGTGCAGGTGTGGTCGGAGTGCTCGCCGCAGAACTACACCGCCGGGAGCGCCTACGGCACGAGCCTCCGCGGCGTGCTGAAGGACGTCGTCGACGCCGCGGTGTCCGGCGGTGGATACGCGGTGGCCAACGACGCCGGCGGCGCCGCGCACGGCCTCGCCATCTGCTACGCCGACGCGCCGCCGGAGGTGTGCCGGCTCTGCCTGGCCATGGCGGCGGGCAACCTGTCGCTCGCCTGCCCGCGCGCCGTGGGCGGCGCCATGCTGTACAACAACTGCCTGCTCCGGTACGCCGGCGGCGCGCCGTTCCTGGCGCGGCCGGACATGGCCCAGGAGTTCTCGTTCTACAACCCCAACATGACGAGCGCCGGCGACGCCGCCCAGTTCGGCGCCGCGCTCAGCCGGCTCATGGACCGCCTCGCGCTCGCCGCCGCGTCGTCGTCGTCGTCTTCCCGTGGCCGGCGGTTCGCGTTCGGGCAGACGAACATCACCGGCGACGGCGGCGACAGCCTCTACGCGTTCGTGCAGTGCGTCGACGACCTCTCGCCGGACGACTGCCGCCGCTGCCTCCAGAGCATCGCGGCGTCGCTGCCCATGACGAGAGGAGGGCGTGCCTACTCGCTGACGTGCTACACGCGGTTCGAGGTGGTGCCGTTCTACAGGCCACCGACCGCGACGAACCTCGTGGTGGTGGCGTCGACGGCGCCGGCGCCGGAATCGGCTTTGCTCCCCACGGAATCAAGAGGCGAGTAA
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| Protein seq | MDSNLAVLLAIVVAVVCVARTTPPAFAQTVQVWSECSPQNYTAGSAYGTSLRGVLKDVVDAAVSGGGYAVANDAGGAAHGLAICYADAPPEVCRLCLAMAAGNLSLACPRAVGGAMLYNNCLLRYAGGAPFLARPDMAQEFSFYNPNMTSAGDAAQFGAALSRLMDRLALAAASSSSSSRGRRFAFGQTNITGDGGDSLYAFVQCVDDLSPDDCRRCLQSIAASLPMTRGGRAYSLTCYTRFEVVPFYRPPTATNLVVVASTAPAPESALLPTESRGE |
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| Function | Cysteine-rich repeat secretory protein 38 [UniProtKB/Swiss-Prot:Q9LRJ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0177100 | Os04t0177100-00 | Chr04 | 5246846 | 5247861 | - | irgsp1_rep | ||
| CDS seq | ATGGATTCCAACCTCGCCGTGCTCCTCGCCATCGTCGTCGCCGTCGTCTGCGTCGCGCGCACCACGCCACCGGCGTTCGCGCAGACGGTGCAGGTGTGGTCGGAGTGCTCGCCGCAGAACTACACCGCCGGGAGCGCCTACGGCACGAGCCTCCGCGGCGTGCTGAAGGACGTCGTCGACGCCGCGGTGTCCGGCGGTGGATACGCGGTGGCCAACGACGCCGGCGGCGCCGCGCACGGCCTCGCCATCTGCTACGCCGACGCGCCGCCGGAGGTGTGCCGGCTCTGCCTGGCCATGGCGGCGGGCAACCTGTCGCTCGCCTGCCCGCGCGCCGTGGGCGGCGCCATGCTGTACAACAACTGCCTGCTCCGGTACGCCGGCGGCGCGCCGTTCCTGGCGCGGCCGGACATGGCCCAGGAGTTCTCGTTCTACAACCCCAACATGACGAGCGCCGGCGACGCCGCCCAGTTCGGCGCCGCGCTCAGCCGGCTCATGGACCGCCTCGCGCTCGCCGCCGCGTCGTCGTCGTCGTCTTCCCGTGGCCGGCGGTTCGCGTTCGGGCAGACGAACATCACCGGCGACGGCGGCGACAGCCTCTACGCGTTCGTGCAGTGCGTCGACGACCTCTCGCCGGACGACTGCCGCCGCTGCCTCCAGAGCATCGCGGCGTCGCTGCCCATGACGAGAGGAGGGCGTGCCTACTCGCTGACGTGCTACACGCGGTTCGAGGTGGTGCCGTTCTACAGGCCACCGACCGCGACGAACCTCGTGGTGGTGGCGTCGACGGCGCCGGCGCCGGAATCGGCTTTGCTCCCCACGGAATCAAGAGGCGAGTAA
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| Protein seq | MDSNLAVLLAIVVAVVCVARTTPPAFAQTVQVWSECSPQNYTAGSAYGTSLRGVLKDVVDAAVSGGGYAVANDAGGAAHGLAICYADAPPEVCRLCLAMAAGNLSLACPRAVGGAMLYNNCLLRYAGGAPFLARPDMAQEFSFYNPNMTSAGDAAQFGAALSRLMDRLALAAASSSSSSRGRRFAFGQTNITGDGGDSLYAFVQCVDDLSPDDCRRCLQSIAASLPMTRGGRAYSLTCYTRFEVVPFYRPPTATNLVVVASTAPAPESALLPTESRGE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0177100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g09780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002850 | SBH | 0.0 | 0.0 | 0.369585 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0003380 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002930 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003110 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003050 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0077800 | SBH | 0.0230685 | 0.008874 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003150 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0080200 | RBH | 0.018337 | 0 | 0.143939 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002970 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003010 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002870 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002960 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003030 | SBH | 0.0 | 0.0 | 0.0 |
