Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0171600 | OGI:04016240 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:4869932-4872151 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATCGTCTCTGCACTCACACTGCACAAAGATGTTTCCCAGTAGTGTAAATATGCGGGAGCAAAATAATATCATAATAATATCAATAGCCATGACCATCCTCCTACTCGTTGTGTTCTTCTGTCGGATGTTGGGTAACATGGCGGGCAAGAACAAGAGGAAGAAGCAACCTAAGCTACCACCCGGGCCAGCTACTATGCCGGTGTTGGGTAACATTCACCAGATTCTGATGAACAAGCCGGTGTTCAGGTGGATCCACCGCCTTCTCGACGAGATGGACACCGAGATCCTGTGCCTCCGTCTCGGCAGCGTCCATGTGATCGCCATCGCCTCACCGGAGATGGCCCGGGAGGCCCTGCGCAGGAACGATGCCGTGCTGACTTCCCGGCCGGTATCGTTCGCGTGGCGGGCGTTCAGCTTTGGGTACAAGAACACCGTTGGGTCGACGGGCGATCAGTGGAAGAAAATGAGGCGGATGCTCGCGTCGGAGATCCTCTCATCGGCCATGGAGCGGCGAATGCTTGGCCAGCGCGTCGAGGAGGCTGACCACCTTGTCAATTACATCTACAGGAACTGTAATAATGGCACTGTAGACATCCGGCACGTAACGAGACACTTCTGTGGCAACATCATCAGGAAGCTGGTGTTTGGCCGGAGACACTTCGCCTTCGGCGCTGGCAATATCGGCCCTGGCCGTGATGAGGAGGCCCACATTGACGCGCTCTTCACGGCGCTAGACTACCTCGGCGCATTCTCCATCTCCGACTACTTCCCGTCGTTGGTTCTCAATGGCCTGATGAGTACATTCAGACGGCTGCATGATCCAATCATAATGGAGAGGATGGAAGAATGGAGGGCTCCCAGGAGAAATGGTGATGAGAGGAGAGAAGTTGCCGATTTTCTGGATGTGTTGATCTCCTTGGACGATGCACAGGGAAAACCGTTGTTGTCACTTGATGAGGTCAAGGCAGAAACGCTGGTAATAAGCTCTATTACACCGTCATATATATATATTTCAAACTAGGACTATAGATATGTCCTCGGAAGAAAAATAGTACGCTTGAAGTGCTTACATTTTGGTCCAAATTTCTAATACTAGAAATGCTTATATTTTACAATTAATTAGTGAGGTCTTGGTTTCGTTATAGGAAACAATATACTATGGTGTGGTTCCGTTCATTTTGATGTTAAAATTAACCGTTGGTTACTATGACTCAATAGTGAGCGCGCAAAATATCTAAGATTTATTTTTTGAAAAATAGCTATGGAAATGTTTGAAAAAAAAATTGTAAGTCTAGTATATGCATATCTATTATCTCATTCTAAACTCCACCCACGCATCGAGAAACAAAGAGACAAATCAAAATAATATATGAACAGTATTGTAGTGTTCATCTATGGATTTCTCTTGTTTTCTATTTATTTCTCCAATCTAGATTTGATTGTTGTGACCTCAGTAGATGTCAGTGCATACTTAATATTGTTGCCAATTTTCCAAAAGTTTTCATGGAAATTTTGATTGTATTTGGGAAGTAAAGACATATCAGAGGTTGCCCCTGGAAGGATGAAAATCCATCACTGTTTTAATTTAATCTTATGGCTGCAGGAAATAATCCTTAATTCGGTAGACAACCCATCAAATGCTGTAGAGTGGGCACTGGCAGAGATGGTGAACAATCCAAAGGTCATGAAGAAAGCAGTAGATGAACTCGATATGGTTGTCGGTAAAGAAAGGCTTGTCGAGGAATCCGACATTCACAGCCTCACATACCTCAAGGCGTGTATCCGGGAGGCGTTCCGCATCCACCCCTACCACCCATTCAACCCTTCCCATGTCGCGATCGCTAACATCACCATCGCTGGATTCATGATCCCAAAGGGTAGCCATATCATTTTAAGCCGAATTGGGCTTGGTCGAAACCCTAGAGCACGGGATAACCCACTCGAATTCCGACCAGAGCGACATTTGAAGAATACTGATAATGTGGTGCTAGCTGAGCCAGAGTTACGGTTTTTATCATTCAGTGCTGGTAGGCGTGGCTGCCCCGCCGTATCACTCGGAACTTCAATTACAATGATGCTTTGGGCCGAAAAACTCAATACTGATGTAATAAAAAAACATATTTGTAATTAAAAAATATTTACAAATAGGTCCTTGGCGCCAATAACGCTGGCACTGAGGAACTATTTGTAAATATTTTACAAATAAAACCATTTTTATT
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| CDS seq | ATGTTTCCCAGTAGTGTAAATATGCGGGAGCAAAATAATATCATAATAATATCAATAGCCATGACCATCCTCCTACTCGTTGTGTTCTTCTGTCGGATGTTGGGTAACATGGCGGGCAAGAACAAGAGGAAGAAGCAACCTAAGCTACCACCCGGGCCAGCTACTATGCCGGTGTTGGGTAACATTCACCAGATTCTGATGAACAAGCCGGTGTTCAGGTGGATCCACCGCCTTCTCGACGAGATGGACACCGAGATCCTGTGCCTCCGTCTCGGCAGCGTCCATGTGATCGCCATCGCCTCACCGGAGATGGCCCGGGAGGCCCTGCGCAGGAACGATGCCGTGCTGACTTCCCGGCCGGTATCGTTCGCGTGGCGGGCGTTCAGCTTTGGGTACAAGAACACCGTTGGGTCGACGGGCGATCAGTGGAAGAAAATGAGGCGGATGCTCGCGTCGGAGATCCTCTCATCGGCCATGGAGCGGCGAATGCTTGGCCAGCGCGTCGAGGAGGCTGACCACCTTGTCAATTACATCTACAGGAACTGTAATAATGGCACTGTAGACATCCGGCACGTAACGAGACACTTCTGTGGCAACATCATCAGGAAGCTGGTGTTTGGCCGGAGACACTTCGCCTTCGGCGCTGGCAATATCGGCCCTGGCCGTGATGAGGAGGCCCACATTGACGCGCTCTTCACGGCGCTAGACTACCTCGGCGCATTCTCCATCTCCGACTACTTCCCGTCGTTGGTTCTCAATGGCCTGATGAGTACATTCAGACGGCTGCATGATCCAATCATAATGGAGAGGATGGAAGAATGGAGGGCTCCCAGGAGAAATGGTGATGAGAGGAGAGAAGTTGCCGATTTTCTGGATGTGTTGATCTCCTTGGACGATGCACAGGGAAAACCGTTGTTGTCACTTGATGAGGTCAAGGCAGAAACGCTGGAAATAATCCTTAATTCGGTAGACAACCCATCAAATGCTGTAGAGTGGGCACTGGCAGAGATGGTGAACAATCCAAAGGTCATGAAGAAAGCAGTAGATGAACTCGATATGGTTGTCGGTAAAGAAAGGCTTGTCGAGGAATCCGACATTCACAGCCTCACATACCTCAAGGCGTGTATCCGGGAGGCGTTCCGCATCCACCCCTACCACCCATTCAACCCTTCCCATGTCGCGATCGCTAACATCACCATCGCTGGATTCATGATCCCAAAGGGTAGCCATATCATTTTAAGCCGAATTGGGCTTGGTCGAAACCCTAGAGCACGGGATAACCCACTCGAATTCCGACCAGAGCGACATTTGAAGAATACTGATAATGTGGTGCTAGCTGAGCCAGAGTTACGGTTTTTATCATTCAGTGCTGGTAGGCGTGGCTGCCCCGCCGTATCACTCGGAACTTCAATTACAATGATGCTTTGGGCCGAAAAACTCAATACTGATGTAATAAAAAAACATATTTGTAATTAA
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| Protein seq | MFPSSVNMREQNNIIIISIAMTILLLVVFFCRMLGNMAGKNKRKKQPKLPPGPATMPVLGNIHQILMNKPVFRWIHRLLDEMDTEILCLRLGSVHVIAIASPEMAREALRRNDAVLTSRPVSFAWRAFSFGYKNTVGSTGDQWKKMRRMLASEILSSAMERRMLGQRVEEADHLVNYIYRNCNNGTVDIRHVTRHFCGNIIRKLVFGRRHFAFGAGNIGPGRDEEAHIDALFTALDYLGAFSISDYFPSLVLNGLMSTFRRLHDPIIMERMEEWRAPRRNGDERREVADFLDVLISLDDAQGKPLLSLDEVKAETLEIILNSVDNPSNAVEWALAEMVNNPKVMKKAVDELDMVVGKERLVEESDIHSLTYLKACIREAFRIHPYHPFNPSHVAIANITIAGFMIPKGSHIILSRIGLGRNPRARDNPLEFRPERHLKNTDNVVLAEPELRFLSFSAGRRGCPAVSLGTSITMMLWAEKLNTDVIKKHICN |
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| Function | Tyrosine N-monooxygenase [UniProtKB/Swiss-Prot:Q43135] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0171600 | Os04t0171600-01 | Chr04 | 4869932 | 4872151 | + | irgsp1_rep | ||
| CDS seq | ATGTTTCCCAGTAGTGTAAATATGCGGGAGCAAAATAATATCATAATAATATCAATAGCCATGACCATCCTCCTACTCGTTGTGTTCTTCTGTCGGATGTTGGGTAACATGGCGGGCAAGAACAAGAGGAAGAAGCAACCTAAGCTACCACCCGGGCCAGCTACTATGCCGGTGTTGGGTAACATTCACCAGATTCTGATGAACAAGCCGGTGTTCAGGTGGATCCACCGCCTTCTCGACGAGATGGACACCGAGATCCTGTGCCTCCGTCTCGGCAGCGTCCATGTGATCGCCATCGCCTCACCGGAGATGGCCCGGGAGGCCCTGCGCAGGAACGATGCCGTGCTGACTTCCCGGCCGGTATCGTTCGCGTGGCGGGCGTTCAGCTTTGGGTACAAGAACACCGTTGGGTCGACGGGCGATCAGTGGAAGAAAATGAGGCGGATGCTCGCGTCGGAGATCCTCTCATCGGCCATGGAGCGGCGAATGCTTGGCCAGCGCGTCGAGGAGGCTGACCACCTTGTCAATTACATCTACAGGAACTGTAATAATGGCACTGTAGACATCCGGCACGTAACGAGACACTTCTGTGGCAACATCATCAGGAAGCTGGTGTTTGGCCGGAGACACTTCGCCTTCGGCGCTGGCAATATCGGCCCTGGCCGTGATGAGGAGGCCCACATTGACGCGCTCTTCACGGCGCTAGACTACCTCGGCGCATTCTCCATCTCCGACTACTTCCCGTCGTTGGTTCTCAATGGCCTGATGAGTACATTCAGACGGCTGCATGATCCAATCATAATGGAGAGGATGGAAGAATGGAGGGCTCCCAGGAGAAATGGTGATGAGAGGAGAGAAGTTGCCGATTTTCTGGATGTGTTGATCTCCTTGGACGATGCACAGGGAAAACCGTTGTTGTCACTTGATGAGGTCAAGGCAGAAACGCTGGAAATAATCCTTAATTCGGTAGACAACCCATCAAATGCTGTAGAGTGGGCACTGGCAGAGATGGTGAACAATCCAAAGGTCATGAAGAAAGCAGTAGATGAACTCGATATGGTTGTCGGTAAAGAAAGGCTTGTCGAGGAATCCGACATTCACAGCCTCACATACCTCAAGGCGTGTATCCGGGAGGCGTTCCGCATCCACCCCTACCACCCATTCAACCCTTCCCATGTCGCGATCGCTAACATCACCATCGCTGGATTCATGATCCCAAAGGGTAGCCATATCATTTTAAGCCGAATTGGGCTTGGTCGAAACCCTAGAGCACGGGATAACCCACTCGAATTCCGACCAGAGCGACATTTGAAGAATACTGATAATGTGGTGCTAGCTGAGCCAGAGTTACGGTTTTTATCATTCAGTGCTGGTAGGCGTGGCTGCCCCGCCGTATCACTCGGAACTTCAATTACAATGATGCTTTGGGCCGAAAAACTCAATACTGATGTAATAAAAAAACATATTTGTAATTAA
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| Protein seq | MFPSSVNMREQNNIIIISIAMTILLLVVFFCRMLGNMAGKNKRKKQPKLPPGPATMPVLGNIHQILMNKPVFRWIHRLLDEMDTEILCLRLGSVHVIAIASPEMAREALRRNDAVLTSRPVSFAWRAFSFGYKNTVGSTGDQWKKMRRMLASEILSSAMERRMLGQRVEEADHLVNYIYRNCNNGTVDIRHVTRHFCGNIIRKLVFGRRHFAFGAGNIGPGRDEEAHIDALFTALDYLGAFSISDYFPSLVLNGLMSTFRRLHDPIIMERMEEWRAPRRNGDERREVADFLDVLISLDDAQGKPLLSLDEVKAETLEIILNSVDNPSNAVEWALAEMVNNPKVMKKAVDELDMVVGKERLVEESDIHSLTYLKACIREAFRIHPYHPFNPSHVAIANITIAGFMIPKGSHIILSRIGLGRNPRARDNPLEFRPERHLKNTDNVVLAEPELRFLSFSAGRRGCPAVSLGTSITMMLWAEKLNTDVIKKHICN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0171600 | Os04t0171600-02 | Chr04 | 4869933 | 4871107 | + | irgsp1_rep | ||
| CDS seq | ATGTTTCCCAGTAGTGTAAATATGCGGGAGCAAAATAATATCATAATAATATCAATAGCCATGACCATCCTCCTACTCGTTGTGTTCTTCTGTCGGATGTTGGGTAACATGGCGGGCAAGAACAAGAGGAAGAAGCAACCTAAGCTACCACCCGGGCCAGCTACTATGCCGGTGTTGGGTAACATTCACCAGATTCTGATGAACAAGCCGGTGTTCAGGTGGATCCACCGCCTTCTCGACGAGATGGACACCGAGATCCTGTGCCTCCGTCTCGGCAGCGTCCATGTGATCGCCATCGCCTCACCGGAGATGGCCCGGGAGGCCCTGCGCAGGAACGATGCCGTGCTGACTTCCCGGCCGGTATCGTTCGCGTGGCGGGCGTTCAGCTTTGGGTACAAGAACACCGTTGGGTCGACGGGCGATCAGTGGAAGAAAATGAGGCGGATGCTCGCGTCGGAGATCCTCTCATCGGCCATGGAGCGGCGAATGCTTGGCCAGCGCGTCGAGGAGGCTGACCACCTTGTCAATTACATCTACAGGAACTGTAATAATGGCACTGTAGACATCCGGCACGTAACGAGACACTTCTGTGGCAACATCATCAGGAAGCTGGTGTTTGGCCGGAGACACTTCGCCTTCGGCGCTGGCAATATCGGCCCTGGCCGTGATGAGGAGGCCCACATTGACGCGCTCTTCACGGCGCTAGACTACCTCGGCGCATTCTCCATCTCCGACTACTTCCCGTCGTTGGTTCTCAATGGCCTGATGAGTACATTCAGACGGCTGCATGATCCAATCATAATGGAGAGGATGGAAGAATGGAGGGCTCCCAGGAGAAATGGTGATGAGAGGAGAGAAGTTGCCGATTTTCTGGATGTGTTGATCTCCTTGGACGATGCACAGGGAAAACCGTTGTTGTCACTTGATGAGGTCAAGGCAGAAACGCTGGTAATAAGCTCTATTACACCGTCATATATATATATTTCAAACTAG
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| Protein seq | MFPSSVNMREQNNIIIISIAMTILLLVVFFCRMLGNMAGKNKRKKQPKLPPGPATMPVLGNIHQILMNKPVFRWIHRLLDEMDTEILCLRLGSVHVIAIASPEMAREALRRNDAVLTSRPVSFAWRAFSFGYKNTVGSTGDQWKKMRRMLASEILSSAMERRMLGQRVEEADHLVNYIYRNCNNGTVDIRHVTRHFCGNIIRKLVFGRRHFAFGAGNIGPGRDEEAHIDALFTALDYLGAFSISDYFPSLVLNGLMSTFRRLHDPIIMERMEEWRAPRRNGDERREVADFLDVLISLDDAQGKPLLSLDEVKAETLVISSITPSYIYISN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0171600 | RBH | 0.0 | 0.0 | 10.949150 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g08824 | RBH | 0.0 | 0.0 | 2.286444 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0171800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002650 | SBH | 0.0 | 0.0 | 12.601593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002960 | RBH | 0.0 | 0.0 | 0.589881 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002720 | RBH | 0.0 | 0.0 | 0.293840 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002880 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002800 | SBH | 0.795859 | 0.0 | 65.353134 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0074300 | RBH | 0.0051045 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002950 | SBH | 0.0 | 0.0 | 0.433914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0074300 | SBH | 1.329293 | 0 | 0.1258275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002780 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002960 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002850 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002650 | SBH | 0.0 | 0.0 | 2.285650 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002770 | SBH | 0.007583 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002970 | RBH | 0.0 | 0.0 | 4.971252 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002850 | SBH | 0.0 | 0.0 | 3.762681 |
