Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0109400 | OGI:04001340 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:560485-562482 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCACATCATGTCCTACCCATATTTCCAATTTTCCTTGTTACATTCTTCTTTGTGATGTTATGCTCAATCTCCTCGTCCAACGCATGCACTGGCCTGGAAGCTTGCACAAGCTTGGAGAAAGACGGGAGTGGCTCGGACAGCATCAGCATCCCGACTTTCGATGGCATCGACGAGCACCAGTCGCTGCTCGTCCTCAAGAACGCGGAGATATGGCGCGACGTCCTCCGCGCGCCTCCCTACAAGCAACACCTCGTCGTCATCCGGCTCCGTCCTCCCGTCATCCGGTTCCGTCCTCCTCCCCTTCCGGATGGAGCTCTGGCGCCACGTCGTCTCCGGCGACATGATGACGAAGAACGAGGCGTCCTTCACCACCACTCTAAGGTTCATGATCATCTCATCTCGGACCGGCGGCCCGTGGGCAGCCTGGCGTTCGTCGTCGTCCCCACCCTCAACGCCGCCGATGGCGCCTTACCGCGGGCGTTGAACACCGCAAACTACACCATCACCACCACCTCCAATAATCATAGCTTGTCCCTTGATCTTGCAAGCATCATGTCGGACTACAACAACAACAGTAACAAGTCGACAAGCACAGCCGTGAACTACACGGTGTGGATCGACTACGACGGCATCGGGCACAAGATTTCTGCGTACATGGCCAACGACGGGCAACTGAAACCATCAAAGGCCATCTTTGCCGGGCACCTCACCATGAGCAACCGTGTCCCCAACAAGGCGTACATCGGTTTCTTTGCCTCCGGCTCCGATGGCGAGACATACGGCTTGTTGAGCTGGAACATCACCGTGGACAGAGTCCCGGACTCGGGCATCGCTGCGAGCAAGAGCAAAAACAAACCATTCGAGACCGGATTCACGACAGTGATCGTGGTCTTCTCATTCTTCTCTGTTTCTCTGATTGTGATCCTTGTGTTTCAGAGCAAGAAGAACTCCGATGCAAAGCAGCTTTTAGATGAGGTGCTGAGCCAACTCGCCAGGAAGCTTAAGTACTCGGAGATAAGGAACGCGACTGGTAACTTCACTGACGCGAGGAGACTCGGACGAGGTTCGTTCGGAGTCGTCTACATGGGGACGCTCACAACTCAGAGAAATGGGCGGACGCAAGAACAGCGGCAGCAGCAAGTAGCTGTGAAGAAGTTCGATCGGGACGAAAACCAGCAGCGTCGTTTCACCGATTTTCTTGTGGAGATTCAAGTTATAATCCGGTTGAAGCACAACAATATCGTGCAACTTATTGGTTGGTGCTTGGAGAAACGAGCGCTTTTGCTGGTGTACGAGTACAAGCACAACGGTAGCCTCGACAATCACCTGTTCGGCAACCACAGCCGCCAGCAGCAGGTGCTACCATGGCCGACACGCTACAGCATCGTCAGGGACGTCGCCGCGGGACTCCACTACATCCACCACGAGCTAGAGGACATCAAGTCCAGCAACATCCTGCTCGACCAAGAATTCCGTGCCTGCCTCGGAGACTTCGGCCTTGCCCGCGTCATCTCCGGTGGCAGGAGCTCCGCTTCAATGGAGCTCGCCGGCACCAGGGGTTTCATAGCGCCGGAGTACGCGCAGAATCGGGTGGCGACGCGGCGGACCGACGTGTACGCGTTTGGAGCCCTCGTCCTTGAGATCGTCACCGGTAGGAAGGCACTCGATCACTCCCGGCCCAGTGACTCAGTGCTGATCGCTAACTGGGTACGGGATGAATTCCACAATAACGGCAAGCTGCTGGAAGCCGTGGACGGCAGCCTCACCACGGAGGAAGGTCTCCAGTACGATGCCGACGACGCAGAACGGCTACTTCTCCTTGGCTTATCGTGCACCAGCCACAGCGCTTCAGACCGGCCAAGCATGGAGATGGTCGTGCAGATCGTTGCCAAGCCCGTGCCGCGGCCGGTCGTCGTTGTGCCTCGTGTGGAGCCGGCGTTCGTGGGGAGCTCATCGGCCGAGATCGATGATGCCTCAAGCCTAGGTCGCCGTTGA
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| CDS seq | ATGGCACATCATGTCCTACCCATATTTCCAATTTTCCTTGTTACATTCTTCTTTGTGATGTTATGCTCAATCTCCTCGTCCAACGCATGCACTGGCCTGGAAGCTTGCACAAGCTTGGAGAAAGACGGGAGTGGCTCGGACAGCATCAGCATCCCGACTTTCGATGGCATCGACGAGCACCAGTCGCTGCTCGTCCTCAAGAACGCGGAGATATGGCGCGACGTCCTCCGCGCGCCTCCCTACAAGCAACACCTCGTCGTCATCCGGCTCCGTCCTCCCGTCATCCGGTTCCGTCCTCCTCCCCTTCCGGATGGAGCTCTGGCGCCACGTCGTCTCCGGCGACATGATGACGAAGAACGAGGCGTCCTTCACCACCACTCTAAGGTTCATGATCATCTCATCTCGGACCGGCGGCCCGTGGGCAGCCTGGCGTTCGTCGTCGTCCCCACCCTCAACGCCGCCGATGGCGCCTTACCGCGGGCGTTGAACACCGCAAACTACACCATCACCACCACCTCCAATAATCATAGCTTGTCCCTTGATCTTGCAAGCATCATGTCGGACTACAACAACAACAGTAACAAGTCGACAAGCACAGCCGTGAACTACACGGTGTGGATCGACTACGACGGCATCGGGCACAAGATTTCTGCGTACATGGCCAACGACGGGCAACTGAAACCATCAAAGGCCATCTTTGCCGGGCACCTCACCATGAGCAACCGTGTCCCCAACAAGGCGTACATCGGTTTCTTTGCCTCCGGCTCCGATGGCGAGACATACGGCTTGTTGAGCTGGAACATCACCGTGGACAGAGTCCCGGACTCGGGCATCGCTGCGAGCAAGAGCAAAAACAAACCATTCGAGACCGGATTCACGACAGTGATCGTGGTCTTCTCATTCTTCTCTGTTTCTCTGATTGTGATCCTTGTGTTTCAGAGCAAGAAGAACTCCGATGCAAAGCAGCTTTTAGATGAGGTGCTGAGCCAACTCGCCAGGAAGCTTAAGTACTCGGAGATAAGGAACGCGACTGGTAACTTCACTGACGCGAGGAGACTCGGACGAGGTTCGTTCGGAGTCGTCTACATGGGGACGCTCACAACTCAGAGAAATGGGCGGACGCAAGAACAGCGGCAGCAGCAAGTAGCTGTGAAGAAGTTCGATCGGGACGAAAACCAGCAGCGTCGTTTCACCGATTTTCTTGTGGAGATTCAAGTTATAATCCGGTTGAAGCACAACAATATCGTGCAACTTATTGGTTGGTGCTTGGAGAAACGAGCGCTTTTGCTGGTGTACGAGTACAAGCACAACGGTAGCCTCGACAATCACCTGTTCGGCAACCACAGCCGCCAGCAGCAGGTGCTACCATGGCCGACACGCTACAGCATCGTCAGGGACGTCGCCGCGGGACTCCACTACATCCACCACGAGCTAGAGGACATCAAGTCCAGCAACATCCTGCTCGACCAAGAATTCCGTGCCTGCCTCGGAGACTTCGGCCTTGCCCGCGTCATCTCCGGTGGCAGGAGCTCCGCTTCAATGGAGCTCGCCGGCACCAGGGGTTTCATAGCGCCGGAGTACGCGCAGAATCGGGTGGCGACGCGGCGGACCGACGTGTACGCGTTTGGAGCCCTCGTCCTTGAGATCGTCACCGGTAGGAAGGCACTCGATCACTCCCGGCCCAGTGACTCAGTGCTGATCGCTAACTGGGTACGGGATGAATTCCACAATAACGGCAAGCTGCTGGAAGCCGTGGACGGCAGCCTCACCACGGAGGAAGGTCTCCAGTACGATGCCGACGACGCAGAACGGCTACTTCTCCTTGGCTTATCGTGCACCAGCCACAGCGCTTCAGACCGGCCAAGCATGGAGATGGTCGTGCAGATCGTTGCCAAGCCCGTGCCGCGGCCGGTCGTCGTTGTGCCTCGTGTGGAGCCGGCGTTCGTGGGGAGCTCATCGGCCGAGATCGATGATGCCTCAAGCCTAGGTCGCCGTTGA
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| Protein seq | MAHHVLPIFPIFLVTFFFVMLCSISSSNACTGLEACTSLEKDGSGSDSISIPTFDGIDEHQSLLVLKNAEIWRDVLRAPPYKQHLVVIRLRPPVIRFRPPPLPDGALAPRRLRRHDDEERGVLHHHSKVHDHLISDRRPVGSLAFVVVPTLNAADGALPRALNTANYTITTTSNNHSLSLDLASIMSDYNNNSNKSTSTAVNYTVWIDYDGIGHKISAYMANDGQLKPSKAIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLSWNITVDRVPDSGIAASKSKNKPFETGFTTVIVVFSFFSVSLIVILVFQSKKNSDAKQLLDEVLSQLARKLKYSEIRNATGNFTDARRLGRGSFGVVYMGTLTTQRNGRTQEQRQQQVAVKKFDRDENQQRRFTDFLVEIQVIIRLKHNNIVQLIGWCLEKRALLLVYEYKHNGSLDNHLFGNHSRQQQVLPWPTRYSIVRDVAAGLHYIHHELEDIKSSNILLDQEFRACLGDFGLARVISGGRSSASMELAGTRGFIAPEYAQNRVATRRTDVYAFGALVLEIVTGRKALDHSRPSDSVLIANWVRDEFHNNGKLLEAVDGSLTTEEGLQYDADDAERLLLLGLSCTSHSASDRPSMEMVVQIVAKPVPRPVVVVPRVEPAFVGSSSAEIDDASSLGRR |
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| Function | L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0109400 | Os04t0109400-00 | Chr04 | 560485 | 562482 | + | irgsp1_rep | ||
| CDS seq | ATGGCACATCATGTCCTACCCATATTTCCAATTTTCCTTGTTACATTCTTCTTTGTGATGTTATGCTCAATCTCCTCGTCCAACGCATGCACTGGCCTGGAAGCTTGCACAAGCTTGGAGAAAGACGGGAGTGGCTCGGACAGCATCAGCATCCCGACTTTCGATGGCATCGACGAGCACCAGTCGCTGCTCGTCCTCAAGAACGCGGAGATATGGCGCGACGTCCTCCGCGCGCCTCCCTACAAGCAACACCTCGTCGTCATCCGGCTCCGTCCTCCCGTCATCCGGTTCCGTCCTCCTCCCCTTCCGGATGGAGCTCTGGCGCCACGTCGTCTCCGGCGACATGATGACGAAGAACGAGGCGTCCTTCACCACCACTCTAAGGTTCATGATCATCTCATCTCGGACCGGCGGCCCGTGGGCAGCCTGGCGTTCGTCGTCGTCCCCACCCTCAACGCCGCCGATGGCGCCTTACCGCGGGCGTTGAACACCGCAAACTACACCATCACCACCACCTCCAATAATCATAGCTTGTCCCTTGATCTTGCAAGCATCATGTCGGACTACAACAACAACAGTAACAAGTCGACAAGCACAGCCGTGAACTACACGGTGTGGATCGACTACGACGGCATCGGGCACAAGATTTCTGCGTACATGGCCAACGACGGGCAACTGAAACCATCAAAGGCCATCTTTGCCGGGCACCTCACCATGAGCAACCGTGTCCCCAACAAGGCGTACATCGGTTTCTTTGCCTCCGGCTCCGATGGCGAGACATACGGCTTGTTGAGCTGGAACATCACCGTGGACAGAGTCCCGGACTCGGGCATCGCTGCGAGCAAGAGCAAAAACAAACCATTCGAGACCGGATTCACGACAGTGATCGTGGTCTTCTCATTCTTCTCTGTTTCTCTGATTGTGATCCTTGTGTTTCAGAGCAAGAAGAACTCCGATGCAAAGCAGCTTTTAGATGAGGTGCTGAGCCAACTCGCCAGGAAGCTTAAGTACTCGGAGATAAGGAACGCGACTGGTAACTTCACTGACGCGAGGAGACTCGGACGAGGTTCGTTCGGAGTCGTCTACATGGGGACGCTCACAACTCAGAGAAATGGGCGGACGCAAGAACAGCGGCAGCAGCAAGTAGCTGTGAAGAAGTTCGATCGGGACGAAAACCAGCAGCGTCGTTTCACCGATTTTCTTGTGGAGATTCAAGTTATAATCCGGTTGAAGCACAACAATATCGTGCAACTTATTGGTTGGTGCTTGGAGAAACGAGCGCTTTTGCTGGTGTACGAGTACAAGCACAACGGTAGCCTCGACAATCACCTGTTCGGCAACCACAGCCGCCAGCAGCAGGTGCTACCATGGCCGACACGCTACAGCATCGTCAGGGACGTCGCCGCGGGACTCCACTACATCCACCACGAGCTAGAGGACATCAAGTCCAGCAACATCCTGCTCGACCAAGAATTCCGTGCCTGCCTCGGAGACTTCGGCCTTGCCCGCGTCATCTCCGGTGGCAGGAGCTCCGCTTCAATGGAGCTCGCCGGCACCAGGGGTTTCATAGCGCCGGAGTACGCGCAGAATCGGGTGGCGACGCGGCGGACCGACGTGTACGCGTTTGGAGCCCTCGTCCTTGAGATCGTCACCGGTAGGAAGGCACTCGATCACTCCCGGCCCAGTGACTCAGTGCTGATCGCTAACTGGGTACGGGATGAATTCCACAATAACGGCAAGCTGCTGGAAGCCGTGGACGGCAGCCTCACCACGGAGGAAGGTCTCCAGTACGATGCCGACGACGCAGAACGGCTACTTCTCCTTGGCTTATCGTGCACCAGCCACAGCGCTTCAGACCGGCCAAGCATGGAGATGGTCGTGCAGATCGTTGCCAAGCCCGTGCCGCGGCCGGTCGTCGTTGTGCCTCGTGTGGAGCCGGCGTTCGTGGGGAGCTCATCGGCCGAGATCGATGATGCCTCAAGCCTAGGTCGCCGTTGA
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| Protein seq | MAHHVLPIFPIFLVTFFFVMLCSISSSNACTGLEACTSLEKDGSGSDSISIPTFDGIDEHQSLLVLKNAEIWRDVLRAPPYKQHLVVIRLRPPVIRFRPPPLPDGALAPRRLRRHDDEERGVLHHHSKVHDHLISDRRPVGSLAFVVVPTLNAADGALPRALNTANYTITTTSNNHSLSLDLASIMSDYNNNSNKSTSTAVNYTVWIDYDGIGHKISAYMANDGQLKPSKAIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLSWNITVDRVPDSGIAASKSKNKPFETGFTTVIVVFSFFSVSLIVILVFQSKKNSDAKQLLDEVLSQLARKLKYSEIRNATGNFTDARRLGRGSFGVVYMGTLTTQRNGRTQEQRQQQVAVKKFDRDENQQRRFTDFLVEIQVIIRLKHNNIVQLIGWCLEKRALLLVYEYKHNGSLDNHLFGNHSRQQQVLPWPTRYSIVRDVAAGLHYIHHELEDIKSSNILLDQEFRACLGDFGLARVISGGRSSASMELAGTRGFIAPEYAQNRVATRRTDVYAFGALVLEIVTGRKALDHSRPSDSVLIANWVRDEFHNNGKLLEAVDGSLTTEEGLQYDADDAERLLLLGLSCTSHSASDRPSMEMVVQIVAKPVPRPVVVVPRVEPAFVGSSSAEIDDASSLGRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0109400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g01890 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000400 | RBH | 0.0 | 1.556424 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000390 | RBH | 0.0 | 2.048098 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0007300 | RBH | 0.0163405 | 2.4693075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000410 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0009800 | RBH | 0.028788 | 22.9176415 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000420 | RBH | 0.0 | 10.206039 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000400 | RBH | 0.0 | 0.128466 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000400 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030700 | SBH | 0.782183 | 0.000000 | 0.861626 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000350 | RBH | 0.0 | 0.0 | 0.0 |
