Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0847800 | OGI:03099690 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:35647670-35650832 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTTCCTCTTCCCTTCCCCCTTCCTCCTCCTCCTCCCCCTCCTCCGGTGCGGTGCGGTGGAGTCCCCTTCCTCCTCGCGCTCCTCCTCCTCCTCAACCCTACTCCTTCTCCTCCTCCTCCGAATCCAAACCTGACACACAGAGGCGGCAGCGAGAAGGTGGAGGAGAAATTTGAACGGAAAAGGTTGGGGGATCGCATCGCAACGAACCCAGCACTGCAGCCCCCCCGATTCCGATTGGGTGGGGGGTCGGATCCTCGGATCCCCCCGCGCCGCCGATAATTCGGCCCCGCCCCCGCCCAGATCCCCGCGATTCCGGCGCCGGCGCCGGGGATGAGAGCCCCGAGGACATGGTCGCCGTGGCACGAGTGAGGCGGCCCCGGTTGCTGCGCCACCAGGAGGAGGGGAGGAGGACCGCCCGCGCCCGCGCCCGCGGCGGCGGCGGAGGAGGTGTCTGCGGTGGTGGTGGTGGTGGTGACCTGAGGCGGAGGAGGGAGGAGGTGGTGGGTGATCCGGGGCCCGAGGCGGCCGTGCCATGTCTCGCTGCTTCCCGTTTCCGCCCCCAGGATATGAGAAGACCGCCCGCCCCGACGGCCAGCTAGCCTCGCACCTGCTCGAAAAGGTGGAAACCCCAAACAATCTCACACTCCCCCCATGCCACCCCCGTCTCCGTCCTCCTCGCTCCATTGATCGCTACTAGTACACATGCATCCGGGGATATCTTAACCTGACTTATGCTGTTGCAGTTGCCTGTAGAATTTCAGAACCAAGCCGTAGGTCACGTTCTGGTGGGGAGAGGGGAGGGGGGATAAGCTAGCCCTAGATGATTAGGGCTGATGTCTTAGGAATTTTCAGCTGCTGGGCTACTAGGGTTAGATCACAGCCTTGTCGGCTCGCGGGAGGCGTTATCGCTGCTCACGGGGATCTCACGAGACATCCATGGAATTTAGATTTGCTAGACCAATGCTTTCCTAAAAGTGTCCTTGATGGCTTGAGCTGGATAAATTAGGTCTTTGACTAAGCGGTTAAAGGTAGGCGTCTTCTTTTGGATGGATCGACGGAAGATAATGTAGTAACGTATAGTGTTTATTCATTGGTCGCAACTTACGTCATGCTTATCTCAACTATATTAGATAGGCTAGTGGATTGTAGCATATTTATCTTGCCACTTTGCTAGCTGAAACCTACTCGAGTCTTCATGAAAACCACGACGTGTTGTTTTGCACCATTCTGATGGCTGCGAAGATGGTGTGGTAGAAAAAACTTCGTTGGTTATTTTGTTTGTTAGAGGTTACATTCAATTTTCAATTATGTCATGGACATGTTGATAGAAGATTGGACAGTCAATTACTACACTCCTTTTATGGTCTTGACATGCATCTTTGTGGAAGTTACAAAGCTAGCATGATGCATGTTATGCTAACTTTGTCTATGTTAAAATAAAGTTGTACGTTACTGACCTTAGTAATTGTCTGACCAGAATCACTATGGTGGAATGTGTCTTTTATTAATTGTCAGTCTCAATAGTGGTTGTTCTAAATCAATTTTAGCTTTCCCTTCTAGGCTGTAGACCATATATGTATTCCAGCATTTGTTTCTATATAATGCTGATTTCAATCCTCTCTCTTCTTCTTTTCTATATAATGCTGATTTCAATCCTCTCTCTTCTTCTTTCCATGCCTGATTATGTATTACAACATTTCCTCACTAAGTCATTATTACTTTAGGTAGGCGGAACTTGTGCTTCTGTTATGTTGCCTTCATGGTTGTGCATATACATGATTCTAACAGATTTAACTGCCTTTTCCCTTTGGTATACCTGTCCTCAGTCTGTCTTTGTCTATGTGCTGTTCCTGTGGTTGCATAGATCCTCAAATCTGTCAATCTGCTTCGTGCATATTTCATTCTGCTTCAATTTTTTTTTATTACAGCTAACATGTTGTTCACTTCTGTTCATGCTTCTGTTTATTGTCCATATTTTGAGTAAGTAGAAAATGCATTTAACATGAAAGTTCAAAGGGGCTAAGCTGAAGTGGCAACACAAATGCACTAAAAATGAAAAGATTTGGACTTTAAGCTTATGTCTCACAAAAGCAAATGCCATGTTTGTGTGTTTTTTCTTTTATTCTTCTGGCTGTTGGCTGTGAAATATGCCTGTAGTGTCTATGCATTCCATCCGTATGATAATTGCTAACATTATGGATGATTTTGTATCTATGCAAGCTTACAAAGTTCTGTTACATTCTGGCATCAGGGAACTATGTCACACTTGAGTTTTACTCTTAAACAACTTTTAGTGGTGTCAAACAAGTGAAAACAATGGCTATGATACAGTTTATATAACATGAATACATGATATGCAACACTTAGTAAAAATATGCTCTTATTTAGTGATTCCCCCACTTTGTTTTGTCACCCGGACTCACGCTTTTGTTAATATAAAGGTGTTTTCTCCGCTAACTATTTGTAGGCTAGTAGTTTAATTTCAAAACAAAGGTAACTCATGGTTGTTGCATATCTTTTGATCTGTAACTTGATAATAATTGGTACAATTCTCCAAAGCAAAATACAGTGTGTAGCTTCATATACAGAATCAGGCGCACAATTAGTCTTGGATATTGCAGAAACAATTAGTTTGCATTTCAATAGGATAAATTTGTTACCAAAAAATCCTGCATTTTTTTGTCTCGTTTGTTTAAAAGGCAGTAGCTAGCCAATCTTGCTTATAATTATTCAATATTTATGTAGTACTATTTCACTGGTTCAAAAATACCATTTCCGATACAACTTGATAAGGATAGTACAGCGGAAGCCATTTATGATGCTACTTATTGGCTTGTAGTGTTAATGATTTACATCTCAGTGACTGCAGCATCGGTAACTTGTTGTTCAGTAGTATGTCTTTAGGCAGTTCCCCAGGACAGTCTCTCTTGTACGTAAAAGTCTTATTATGTTACCTTGGTCATCCTGTGAGGTTAATGATTATCAGCTCAGAGAAATTTTCTTTTGAAAATCATTTCAATATGTTCATTCATGAATGGTATTGTTGACATACATCTTCGCGTTTTTTAGTTATTTGTTTTATTCTCAAACTCTACTTAACTGAAAAACCCTCCTTGTTTCAGGAGAAACACAAGGAGAAGAAGCATAAGAAGGACAAGAAGG
More
|
||||||||||
| CDS seq | ATGTCTCGCTGCTTCCCGTTTCCGCCCCCAGGATATGAGAAGACCGCCCGCCCCGACGGCCAGCTAGCCTCGCACCTGCTCGAAAAGGAGAAACACAAGGAGAAGAAGCATAAGAAGGACAAGAAGG |
||||||||||
| Protein seq | MSRCFPFPPPGYEKTARPDGQLASHLLEKEKHKEKKHKKDKK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0847800 | Os03t0847800-01 | Chr03 | 35647670 | 35650832 | + | irgsp1_rep | ||
| CDS seq | ATGTCTCGCTGCTTCCCGTTTCCGCCCCCAGGATATGAGAAGACCGCCCGCCCCGACGGCCAGCTAGCCTCGCACCTGCTCGAAAAGGAGAAACACAAGGAGAAGAAGCATAAGAAGGACAAGAAGG |
|||||||
| Protein seq | MSRCFPFPPPGYEKTARPDGQLASHLLEKEKHKEKKHKKDKK |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0847800 | RBH | 1.104845 | 1.100756 | 0.514927 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63040 | RBH | 1.813372 | 1.364484 | 1.127103 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0042020 | RBH | 0.695264 | 7.951247 | 5.588464 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041710 | RBH | 0.478413 | 2.882672 | 2.512100 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041750 | RBH | 2.122027 | 4.055015 | 7.088734 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0042000 | RBH | 0.185911 | 0.261537 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041560 | RBH | 7.400401 | 13.836704 | 16.685547 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0609900 | RBH | 6.075634 | 14.923828 | 14.784034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041290 | RBH | 0.513370 | 0.510337 | 1.174281 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0611500 | RBH | 8.0204235 | 14.386651 | 12.7632905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041780 | RBH | 0.587321 | 9.388077 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041470 | RBH | 6.068581 | 19.350094 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041520 | RBH | 1.120742 | 1.696270 | 0.908671 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041570 | RBH | 0.321525 | 5.216356 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041330 | RBH | 0.811565 | 2.352710 | 2.033519 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
