Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0836300 | OGI:03098200 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:35140216-35141197 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGACCTGACCCAAACGGAAGTCTTCTCCTCTCCCCTTGCTCAGTTCATTCAGTTGGCCTCCTCGATCCACCTCCAGCCTCTCAATTCAATCGCCATTGACAACAATCCGCGAGGCGAGGTGCTTAGTTTCTCAGCCAAGACTCGAGTCGACGCCGGCCATGGCTTTCTGGGAGGATTGGGGCAAGGGCGACTGCGACTGCGGCTGGAAGAAGTGCCTCATCTGGACGGCGGCCATCGCCGGCGTGGGCGGGCTCATCGTGCTCCTCGTCTTCGCCTTCGCCCTCGTGTTCCCGCCCAAGGCCACCGCCGACGACGCCGTGCTGCTCCGCCTCGCGCTGTCCCCGGGCTCGCCGCCGTCCAACTCCACCGTCTCCTACAACGCCACGGTGACGCTGTCGCTGCGTAACCCGAACCTGTACCGCGGCATCAGCTACGACCCCGTCGCGGTGGCCTTCTCCTTCAACGGCACGCGCTTCGACGAGTCCGCCACCGTGCCGGCGTTCTACCATCGGCCGAGGAAGACGGCGACGTTCCACGTCACGGTGGGCGGCGCGGGCAAGCCCGTCCCCAAGCTCACCGCGGCGGGGGTGGCGGCGTTCAGGGCGGAGAACGCGACGGGGAGGTTCGAGGTGGAGGTGAGGCTGGACACGGTGATGCAGTACAAGGCGAGGAAGGCGCGGTGCCCGCTCGCCGTCATCTGCCCGCTGCAGCTGCAGCTCGTCGACCCGGACGTCGCCGCCACCGCGTTCCAGAGGACCAAGTGCACCGTCCTCCGGGCCAAGAAGTCCGGATGCTAGCTAACCTACCTACCTGCAATTTTCTCGAGATTTCAGTTTTCTTTTGCTTGTTCTTGCTTGCTGGAGATTGTTGCCATGTATGATTGGAAGATTGCATTTTGGATTAGAAATTGTAAGATTGGTTATTGTGTAGTGTGTACTGTGTACTGCTACTCATCTGGAGAAATTCGGGACAATTGGATATC
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| CDS seq | ATGGCTTTCTGGGAGGATTGGGGCAAGGGCGACTGCGACTGCGGCTGGAAGAAGTGCCTCATCTGGACGGCGGCCATCGCCGGCGTGGGCGGGCTCATCGTGCTCCTCGTCTTCGCCTTCGCCCTCGTGTTCCCGCCCAAGGCCACCGCCGACGACGCCGTGCTGCTCCGCCTCGCGCTGTCCCCGGGCTCGCCGCCGTCCAACTCCACCGTCTCCTACAACGCCACGGTGACGCTGTCGCTGCGTAACCCGAACCTGTACCGCGGCATCAGCTACGACCCCGTCGCGGTGGCCTTCTCCTTCAACGGCACGCGCTTCGACGAGTCCGCCACCGTGCCGGCGTTCTACCATCGGCCGAGGAAGACGGCGACGTTCCACGTCACGGTGGGCGGCGCGGGCAAGCCCGTCCCCAAGCTCACCGCGGCGGGGGTGGCGGCGTTCAGGGCGGAGAACGCGACGGGGAGGTTCGAGGTGGAGGTGAGGCTGGACACGGTGATGCAGTACAAGGCGAGGAAGGCGCGGTGCCCGCTCGCCGTCATCTGCCCGCTGCAGCTGCAGCTCGTCGACCCGGACGTCGCCGCCACCGCGTTCCAGAGGACCAAGTGCACCGTCCTCCGGGCCAAGAAGTCCGGATGCTAG
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| Protein seq | MAFWEDWGKGDCDCGWKKCLIWTAAIAGVGGLIVLLVFAFALVFPPKATADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRFDESATVPAFYHRPRKTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVMQYKARKARCPLAVICPLQLQLVDPDVAATAFQRTKCTVLRAKKSGC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0836300 | Os03t0836300-01 | Chr03 | 35140216 | 35141197 | + | irgsp1_rep | ||
| CDS seq | ATGGCTTTCTGGGAGGATTGGGGCAAGGGCGACTGCGACTGCGGCTGGAAGAAGTGCCTCATCTGGACGGCGGCCATCGCCGGCGTGGGCGGGCTCATCGTGCTCCTCGTCTTCGCCTTCGCCCTCGTGTTCCCGCCCAAGGCCACCGCCGACGACGCCGTGCTGCTCCGCCTCGCGCTGTCCCCGGGCTCGCCGCCGTCCAACTCCACCGTCTCCTACAACGCCACGGTGACGCTGTCGCTGCGTAACCCGAACCTGTACCGCGGCATCAGCTACGACCCCGTCGCGGTGGCCTTCTCCTTCAACGGCACGCGCTTCGACGAGTCCGCCACCGTGCCGGCGTTCTACCATCGGCCGAGGAAGACGGCGACGTTCCACGTCACGGTGGGCGGCGCGGGCAAGCCCGTCCCCAAGCTCACCGCGGCGGGGGTGGCGGCGTTCAGGGCGGAGAACGCGACGGGGAGGTTCGAGGTGGAGGTGAGGCTGGACACGGTGATGCAGTACAAGGCGAGGAAGGCGCGGTGCCCGCTCGCCGTCATCTGCCCGCTGCAGCTGCAGCTCGTCGACCCGGACGTCGCCGCCACCGCGTTCCAGAGGACCAAGTGCACCGTCCTCCGGGCCAAGAAGTCCGGATGCTAG
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| Protein seq | MAFWEDWGKGDCDCGWKKCLIWTAAIAGVGGLIVLLVFAFALVFPPKATADDAVLLRLALSPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRFDESATVPAFYHRPRKTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVMQYKARKARCPLAVICPLQLQLVDPDVAATAFQRTKCTVLRAKKSGC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0836300 | RBH | 0.248619 | 0.902508 | 1.818939 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62010 | RBH | 0.169573 | 0.721838 | 0.449904 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0250900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041210 | RBH | 0.741211 | 6.534198 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0040880 | RBH | 0.0 | 4.284485 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0040950 | RBH | 1.656425 | 10.953714 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041180 | RBH | 0.0 | 0.146879 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040680 | RBH | 0.0 | 4.235371 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0599700 | RBH | 1.792922 | 11.5515945 | 0.191651 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040440 | RBH | 0.0 | 1.044933 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0602300 | RBH | 2.0358805 | 9.735669 | 1.7079925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041020 | RBH | 0.160396 | 0.117627 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0040930 | RBH | 0.222984 | 7.251882 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0040610 | RBH | 0.0 | 17.027830 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040670 | RBH | 0.194831 | 0.470399 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040730 | RBH | 0.116666 | 3.343895 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040500 | RBH | 0.0 | 1.299996 | 2.421095 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040200 | RBH | 0.430088 | 7.142993 | 0.0 |
