Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0767700 | OGI:03089080 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:31788086-31789204 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCTAAGCAAAGTGAATCATCATTTCTTCATCACTGACATGATCCAGTAGCAGTAACAATGTACAACCGTAGTGAAGGAATTCAACTATAACAATGGGTGTCAATGACAGTAGTGGTGGAGAGATGGCTCACCTCACCAGTAATCGCCGCAGGAGCAGGCGCCGTCCTTGAAATGGTGGAAGCGCTTGTTGTCCCTGACGACAATCTCGCGGCCGGTGACCTTGGCGATGAGCTTGACGGCATTGTGGCAGTCACCGCAGATGCGGAGGTTCTTGATGACGCGGAGCGGGGTGCCCGGTGGCGTGCTGACCAGCCCGAACGCGATGGCGAGGCGCTCGCTGTGGTACATGAGCGCGCGGGCCTTGGCGTCCTCGTCGATGTCGTGCAGCACGTAGCGGGTGTCCGGCACGTACCCCGCCGCGCGTATCTCCTCGTGCAGCTCCCGCACCTTCTCGTACGCCTCCCGCCTCTTCGCCTCGTCGCCGTGCTCCTGCTCCTGCTCATGATCCTTCCCCCGCGGCCTCGACGCTCCCTCGAGTGCTCGCCGCGCGTCGCCGCGGGCGCCGAGCTTGCAGTACAGCGTGGAGATCATGTGCAGGATGGGCGTGGCGATCCCGGGCAGGGACTTGGACAGCAATCGGTGCGCTCGCCTGAGCGACGCCAGCGACCGCGCCTCTCCGCAGGCCTGGAGAACCGCGGCTTGCTCCTCCGGCGCGAGGTCGGCCAATGCGCCAGCGCCGCCTCGCACGAGCATTTCGTCGAGCAGGTTAACGGCTGCCTCCGGGTTAGGCTCCTGGCACAGCCTCCGGAGCTCGTCACGGTCGAGGCGGCCCTCTTCACGCCGCGTTCGTACGGTGCTCGTGACGGCGCCGACCCTGGGAGGTGCGGAGCGGCGAAGCAAGCGGCACCCTCCCCGGTGGCGTCGACTCCCCGTCGCCGCAGCTGCCGGGAGGAAGCCGCGGCAGCGCGGGCTTGCAGCGGCTGCAGGAGGGGGCGGCGCGGCGAGCATAGGAGATATTAGCATTTTCGCCGGCGATGTGTGGGGCGCCGGAGTGGCGGAGCAATCTCCGAATCCGACGGTAATGGTGGGAGTGGGTCGCGGTCGGAAGCGGAAGACGC
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| CDS seq | ATGCTAATATCTCCTATGCTCGCCGCGCCGCCCCCTCCTGCAGCCGCTGCAAGCCCGCGCTGCCGCGGCTTCCTCCCGGCAGCTGCGGCGACGGGGAGTCGACGCCACCGGGGAGGGTGCCGCTTGCTTCGCCGCTCCGCACCTCCCAGGGTCGGCGCCGTCACGAGCACCGTACGAACGCGGCGTGAAGAGGGCCGCCTCGACCGTGACGAGCTCCGGAGGCTGTGCCAGGAGCCTAACCCGGAGGCAGCCGTTAACCTGCTCGACGAAATGCTCGTGCGAGGCGGCGCTGGCGCATTGGCCGACCTCGCGCCGGAGGAGCAAGCCGCGGTTCTCCAGGCCTGCGGAGAGGCGCGGTCGCTGGCGTCGCTCAGGCGAGCGCACCGATTGCTGTCCAAGTCCCTGCCCGGGATCGCCACGCCCATCCTGCACATGATCTCCACGCTGTACTGCAAGCTCGGCGCCCGCGGCGACGCGCGGCGAGCACTCGAGGGAGCGTCGAGGCCGCGGGGGAAGGATCATGAGCAGGAGCAGGAGCACGGCGACGAGGCGAAGAGGCGGGAGGCGTACGAGAAGGTGCGGGAGCTGCACGAGGAGATACGCGCGGCGGGGTACGTGCCGGACACCCGCTACGTGCTGCACGACATCGACGAGGACGCCAAGGCCCGCGCGCTCATGTACCACAGCGAGCGCCTCGCCATCGCGTTCGGGCTGGTCAGCACGCCACCGGGCACCCCGCTCCGCGTCATCAAGAACCTCCGCATCTGCGGTGACTGCCACAATGCCGTCAAGCTCATCGCCAAGGTCACCGGCCGCGAGATTGTCGTCAGGGACAACAAGCGCTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGCGATTACTGGTGA
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| Protein seq | MLISPMLAAPPPPAAAASPRCRGFLPAAAATGSRRHRGGCRLLRRSAPPRVGAVTSTVRTRREEGRLDRDELRRLCQEPNPEAAVNLLDEMLVRGGAGALADLAPEEQAAVLQACGEARSLASLRRAHRLLSKSLPGIATPILHMISTLYCKLGARGDARRALEGASRPRGKDHEQEQEHGDEAKRREAYEKVRELHEEIRAAGYVPDTRYVLHDIDEDAKARALMYHSERLAIAFGLVSTPPGTPLRVIKNLRICGDCHNAVKLIAKVTGREIVVRDNKRFHHFKDGACSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein DWY1, chloroplastic [UniProtKB/Swiss-Prot:P0C7R1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0767700 | Os03t0767700-01 | Chr03 | 31788086 | 31789204 | - | irgsp1_rep | ||
| CDS seq | ATGCTAATATCTCCTATGCTCGCCGCGCCGCCCCCTCCTGCAGCCGCTGCAAGCCCGCGCTGCCGCGGCTTCCTCCCGGCAGCTGCGGCGACGGGGAGTCGACGCCACCGGGGAGGGTGCCGCTTGCTTCGCCGCTCCGCACCTCCCAGGGTCGGCGCCGTCACGAGCACCGTACGAACGCGGCGTGAAGAGGGCCGCCTCGACCGTGACGAGCTCCGGAGGCTGTGCCAGGAGCCTAACCCGGAGGCAGCCGTTAACCTGCTCGACGAAATGCTCGTGCGAGGCGGCGCTGGCGCATTGGCCGACCTCGCGCCGGAGGAGCAAGCCGCGGTTCTCCAGGCCTGCGGAGAGGCGCGGTCGCTGGCGTCGCTCAGGCGAGCGCACCGATTGCTGTCCAAGTCCCTGCCCGGGATCGCCACGCCCATCCTGCACATGATCTCCACGCTGTACTGCAAGCTCGGCGCCCGCGGCGACGCGCGGCGAGCACTCGAGGGAGCGTCGAGGCCGCGGGGGAAGGATCATGAGCAGGAGCAGGAGCACGGCGACGAGGCGAAGAGGCGGGAGGCGTACGAGAAGGTGCGGGAGCTGCACGAGGAGATACGCGCGGCGGGGTACGTGCCGGACACCCGCTACGTGCTGCACGACATCGACGAGGACGCCAAGGCCCGCGCGCTCATGTACCACAGCGAGCGCCTCGCCATCGCGTTCGGGCTGGTCAGCACGCCACCGGGCACCCCGCTCCGCGTCATCAAGAACCTCCGCATCTGCGGTGACTGCCACAATGCCGTCAAGCTCATCGCCAAGGTCACCGGCCGCGAGATTGTCGTCAGGGACAACAAGCGCTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGCGATTACTGGTGA
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| Protein seq | MLISPMLAAPPPPAAAASPRCRGFLPAAAATGSRRHRGGCRLLRRSAPPRVGAVTSTVRTRREEGRLDRDELRRLCQEPNPEAAVNLLDEMLVRGGAGALADLAPEEQAAVLQACGEARSLASLRRAHRLLSKSLPGIATPILHMISTLYCKLGARGDARRALEGASRPRGKDHEQEQEHGDEAKRREAYEKVRELHEEIRAAGYVPDTRYVLHDIDEDAKARALMYHSERLAIAFGLVSTPPGTPLRVIKNLRICGDCHNAVKLIAKVTGREIVVRDNKRFHHFKDGACSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0767700 | RBH | 0.653819 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55840 | RBH | 0.303908 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036070 | RBH | 0.073426 | 0.0 | 0.711793 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035740 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035820 | RBH | 0.0 | 0.0 | 0.671499 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036120 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0542400 | RBH | 2.447634 | 1.0640535 | 0.5546215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035410 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0542700 | RBH | 1.882449 | 0.9107815 | 2.841676 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035420 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035210 | RBH | 0.0 | 0.0 | 0.0 |
