Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0761300 | OGI:03088300 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:31480148-31483288 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGGGCCTCTGGAAAATCCAACTGCCTCCACTCGCAACTTGCATCGTCCTCCCGCCGCCGTCGCTCGCCGCGTCGTTTCCCTTCCTCCCTAGCACCGGCACCATCGCCATCTAAGCATTCACGGTCGCCGTCGCCGTCAACCTCTCCACCCTTCCCGTTGCCGCCTCTTGGAAGTTGGAAGTAATCGCGGTATGGGAGGCGTTCGCCCCACCTTGTTTGATGCACGCAAGGTGTTTGTTAGAATGCTTAGCAGCGGTGTAGGCGGCGGTGACGCCCTGGTGGACACCGCTGACCCTGCTAAGCGCCTGTTCAAGCTGATCATCTCCTGCCGGAAGGCCTCAGCGGTCGAGCACGAGCTCGACCACAGCGGCGTCCGCGTCACGCCCGACGTCGCCGAGCGCGTCCTGGAGCGCCTCGACAACGCCGGGATGCTCGCGTACCGGTTCTTCGAGTGGGCGCGCAGGCAGAAACGCGGCGGCTGCGCGCACACCGTCCGGTCGTACCACACGGTGGTCGCGTCCCTCGCCAAGATCCGCCAGTACCAGCTCATGTGGGACGTCGTGGCTGTCATGCGCCGGGAGGGCGCGGTCAATGTCGAGACGTTCGGCATCATCATGAGGAAGTATGCCCGGGCGCAGAAGGTTGATGAGGCAGTTTACACCTTCAACGTCATGGAGAAGTATGGCGTGGTACCTAACCTTGCCGCGTTCAATAGCCTGCTTGGCGCGCTGTGCAAGTCAAAGAACGTGCGCAAAGCACAGGAGATCTTTGACAAGATGAATAGCCGGTTCAGCCCCGATGCCAAGACCTATAGCATCTTGCTTGAGGGATGGGGGAGAGCGCCTAACCTCCCAAAGATGCGAGAGGTCTATAGTGAGATGCTTGACGCTGGTTGTGAGCCGGACATTGTCACCTATGGCATCATGGTCGATTCACTCTGCAAGACAGGCCGCGTTGAGGAAGCTGTCCGTGTGGTGCAGGACATGACCTCCAGGGGATGCCAACCGACAACTTACATATACAGTGTCTTAGTGCATACTTATGGCGTTGAGATGAGGATCGAGGATGCTGTGGCAACATTTTTGGATATGGAGAAGGATGGGATTGTGCCAGATATTGTTGTCTACAATGCACTTGTCTCTGCCTTCTGCAAAGCGAAAAAATTTGAGAATGCCTTTAGAGTCCTTAATGATATGGAGGGCCATGGAATCACTACAAACTCAAGGACCTGGAACATCATCCTTAATCATCTGATTAGCCTTGGAAGGGATGACGAAGCATACAAGGTATTCCGCCGCATGATTAAGTGTTGCCAACCGGACTGTGATACTTACACCATGATGATAAAAATGTTCTGTGAGAATGACAAGGTAGAGATGGCACTCAAGGTATGGAAGTATATGAGGTTGAAGCAGTTTCTCCCAAGCATGCACACGTTCTCTGTACTGATCAATGGGTTGTGTGACAAGCGTGAGGTTAGTCAAGCTTGTGTTTTGCTTGAAGATATGATAGAGAAGGGCATCAGACCTCCCGGTTCAACATTTGGCAAGCTAAGGCAGCTGCTTTTGAAAGAAGGAAGGAAAGATGTGCTTGACTTTCTTGTTGAGAAAATGAACATCCTGATTCAGGAACCTTTGTTTGATTGACCATTCATATCTTATAATGGTATGAGCACTTGATCCACGGTCATATGTTTTCATACACGCCATTAAAATTATATCAATGTTCAATATGTTATGCACTTTATTTCTTCATTTGTTATTTTTTGTGCACTAGTCCATTATTTATGCTACTCCTAAACATTTTGCTGCTAATTTCAGGGTTCATAAATTTTGATGTGCTGCAACACTTTTTTTTTTTGGAACGATCACCGGAGGGGAGAGGTTCCCCACCTGAATTTCCATTAAATAAACAAGCAAGTCTGATACAAAGGGAGATGGATCAGCAGAGTGCAGCGACACTGCCATTACAGTTAATCAGGAAGAAACAAGTAGGGGGGAAGAGAGTACATGCTTCCAAGCGGAAGCAACCTGTCTGTCTTGAATTTTCAGGCGTTCGACCCAGAGAGTGGCGTCATCTATGCAGCGCCGAAGTAATCGTTAAAAGGAGGGCTCCTGGTTTCTGAAGATTACATCATGACGATGATTCCAAATACCCAACAAACAAAGAAGAATAAAGGAGCGATGGTGAGCTGCTGGGATGTTCGTTGGCCGCTGAAAAAGTTGTAGGTTTCTGATGTCGTCGATGCCCGGTGTGATGTGAATTGAGTCCCAATGTGCTGCAACACATTGAGATGTTTGCTATTCACATATGTGAGTGTCCCCGGCAGGAGGATGAGTGGAGGTCCAATCAAGGCTTGTTTGGATTGGAAGGAATTGCAATTCATCCATTCCATTCGGATCAACAGGGATTTTAGTCAACTTCCCTGTTGAAAGGGATTGGACATGATCCAATTGCATCCAGAATAGACCTTAAGGCTTGGCCATGGTATCATCATCAAACTCTTCTGTACAACGTATTGGCAACGTACATACCAGTGGTCTGCTGATCACAAGGTTTGTGCTTAAAGTGCTCAACTGCTGACTGCTAACCAGCTAGGTGACTACTTGCTGCAATATCAGATTGAGACTTTGTCATCATAAAGAGATCAATATGCACTAGCTGATCCAAATGAGCTATTAGGTGCAAGCATCCTGCAAGAACTTGTCAGTTAGGAATGATGATGTTCTCAATTCATGTCTTCATGCCATACTGCAGAATAACAAATCCACTATATCATCTATGTTGTACAAATGATCAGTGGAGCATGAAGAACTGAACCCTTGTCCATGAAAAGTTGGAGAATTTGTTGAACGGTTGAACCTCAAGATGAAGAATTTAAGAATTATGCAAGGAAATTATTGAGCTCAAATTTCACTGCAGGATTATAATTCATAGAGCAGAAGGTGACATCAAAATAACAAAGGACAATTGCTCATTTGACCCTGTGCTGAAGCTAGGCACTGCACAGTATGTACATGTGCTGACAAGCAAGGTAAACAGTAGAAAATTTTTCATATGTCTTCACTGCTTTCTGTGTGAGTTGTTACAAACAACTGGGATATTATTGTGCAAGAAATATAACTATACCTAACATTGTCG
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| CDS seq | ATGGGAGGCGTTCGCCCCACCTTGTTTGATGCACGCAAGGTGTTTGTTAGAATGCTTAGCAGCGGTGTAGGCGGCGGTGACGCCCTGGTGGACACCGCTGACCCTGCTAAGCGCCTGTTCAAGCTGATCATCTCCTGCCGGAAGGCCTCAGCGGTCGAGCACGAGCTCGACCACAGCGGCGTCCGCGTCACGCCCGACGTCGCCGAGCGCGTCCTGGAGCGCCTCGACAACGCCGGGATGCTCGCGTACCGGTTCTTCGAGTGGGCGCGCAGGCAGAAACGCGGCGGCTGCGCGCACACCGTCCGGTCGTACCACACGGTGGTCGCGTCCCTCGCCAAGATCCGCCAGTACCAGCTCATGTGGGACGTCGTGGCTGTCATGCGCCGGGAGGGCGCGGTCAATGTCGAGACGTTCGGCATCATCATGAGGAAGTATGCCCGGGCGCAGAAGGTTGATGAGGCAGTTTACACCTTCAACGTCATGGAGAAGTATGGCGTGGTACCTAACCTTGCCGCGTTCAATAGCCTGCTTGGCGCGCTGTGCAAGTCAAAGAACGTGCGCAAAGCACAGGAGATCTTTGACAAGATGAATAGCCGGTTCAGCCCCGATGCCAAGACCTATAGCATCTTGCTTGAGGGATGGGGGAGAGCGCCTAACCTCCCAAAGATGCGAGAGGTCTATAGTGAGATGCTTGACGCTGGTTGTGAGCCGGACATTGTCACCTATGGCATCATGGTCGATTCACTCTGCAAGACAGGCCGCGTTGAGGAAGCTGTCCGTGTGGTGCAGGACATGACCTCCAGGGGATGCCAACCGACAACTTACATATACAGTGTCTTAGTGCATACTTATGGCGTTGAGATGAGGATCGAGGATGCTGTGGCAACATTTTTGGATATGGAGAAGGATGGGATTGTGCCAGATATTGTTGTCTACAATGCACTTGTCTCTGCCTTCTGCAAAGCGAAAAAATTTGAGAATGCCTTTAGAGTCCTTAATGATATGGAGGGCCATGGAATCACTACAAACTCAAGGACCTGGAACATCATCCTTAATCATCTGATTAGCCTTGGAAGGGATGACGAAGCATACAAGGTATTCCGCCGCATGATTAAGTGTTGCCAACCGGACTGTGATACTTACACCATGATGATAAAAATGTTCTGTGAGAATGACAAGGTAGAGATGGCACTCAAGGTATGGAAGTATATGAGGTTGAAGCAGTTTCTCCCAAGCATGCACACGTTCTCTGTACTGATCAATGGGTTGTGTGACAAGCGTGAGGTTAGTCAAGCTTGTGTTTTGCTTGAAGATATGATAGAGAAGGGCATCAGACCTCCCGGTTCAACATTTGGCAAGCTAAGGCAGCTGCTTTTGAAAGAAGGAAGGAAAGATGTGCTTGACTTTCTTGTTGAGAAAATGAACATCCTGATTCAGGAACCTTTGTTTGATTGA
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| Protein seq | MGGVRPTLFDARKVFVRMLSSGVGGGDALVDTADPAKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLERLDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMNILIQEPLFD |
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| Function | Pentatricopeptide repeat-containing protein At1g77360, mitochondrial [UniProtKB/Swiss-Prot:Q9FVX2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0761300 | Os03t0761300-01 | Chr03 | 31480148 | 31483288 | + | irgsp1_rep | ||
| CDS seq | ATGGGAGGCGTTCGCCCCACCTTGTTTGATGCACGCAAGGTGTTTGTTAGAATGCTTAGCAGCGGTGTAGGCGGCGGTGACGCCCTGGTGGACACCGCTGACCCTGCTAAGCGCCTGTTCAAGCTGATCATCTCCTGCCGGAAGGCCTCAGCGGTCGAGCACGAGCTCGACCACAGCGGCGTCCGCGTCACGCCCGACGTCGCCGAGCGCGTCCTGGAGCGCCTCGACAACGCCGGGATGCTCGCGTACCGGTTCTTCGAGTGGGCGCGCAGGCAGAAACGCGGCGGCTGCGCGCACACCGTCCGGTCGTACCACACGGTGGTCGCGTCCCTCGCCAAGATCCGCCAGTACCAGCTCATGTGGGACGTCGTGGCTGTCATGCGCCGGGAGGGCGCGGTCAATGTCGAGACGTTCGGCATCATCATGAGGAAGTATGCCCGGGCGCAGAAGGTTGATGAGGCAGTTTACACCTTCAACGTCATGGAGAAGTATGGCGTGGTACCTAACCTTGCCGCGTTCAATAGCCTGCTTGGCGCGCTGTGCAAGTCAAAGAACGTGCGCAAAGCACAGGAGATCTTTGACAAGATGAATAGCCGGTTCAGCCCCGATGCCAAGACCTATAGCATCTTGCTTGAGGGATGGGGGAGAGCGCCTAACCTCCCAAAGATGCGAGAGGTCTATAGTGAGATGCTTGACGCTGGTTGTGAGCCGGACATTGTCACCTATGGCATCATGGTCGATTCACTCTGCAAGACAGGCCGCGTTGAGGAAGCTGTCCGTGTGGTGCAGGACATGACCTCCAGGGGATGCCAACCGACAACTTACATATACAGTGTCTTAGTGCATACTTATGGCGTTGAGATGAGGATCGAGGATGCTGTGGCAACATTTTTGGATATGGAGAAGGATGGGATTGTGCCAGATATTGTTGTCTACAATGCACTTGTCTCTGCCTTCTGCAAAGCGAAAAAATTTGAGAATGCCTTTAGAGTCCTTAATGATATGGAGGGCCATGGAATCACTACAAACTCAAGGACCTGGAACATCATCCTTAATCATCTGATTAGCCTTGGAAGGGATGACGAAGCATACAAGGTATTCCGCCGCATGATTAAGTGTTGCCAACCGGACTGTGATACTTACACCATGATGATAAAAATGTTCTGTGAGAATGACAAGGTAGAGATGGCACTCAAGGTATGGAAGTATATGAGGTTGAAGCAGTTTCTCCCAAGCATGCACACGTTCTCTGTACTGATCAATGGGTTGTGTGACAAGCGTGAGGTTAGTCAAGCTTGTGTTTTGCTTGAAGATATGATAGAGAAGGGCATCAGACCTCCCGGTTCAACATTTGGCAAGCTAAGGCAGCTGCTTTTGAAAGAAGGAAGGAAAGATGTGCTTGACTTTCTTGTTGAGAAAATGAACATCCTGATTCAGGAACCTTTGTTTGATTGA
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| Protein seq | MGGVRPTLFDARKVFVRMLSSGVGGGDALVDTADPAKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLERLDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMNILIQEPLFD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0761300 | RBH | 0.081763 | 0.083850 | 0.199839 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55340 | RBH | 0.055292 | 0.056396 | 0.051442 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0113500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035620 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035290 | RBH | 0.078142 | 0.0 | 0.055906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035380 | RBH | 0.0 | 1.356118 | 0.402735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035680 | RBH | 0.0 | 0.035880 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035200 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0537700 | RBH | 0.384877 | 0.768555 | 0.1012355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034990 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0537600 | RBH | 0.382334 | 0.999832 | 1.9136355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034990 | RBH | 0.0 | 0.0 | 0.207265 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034810 | RBH | 0.0 | 0.0 | 0.0 |
