Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0748300 | OGI:03086310 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:30796483-30798275 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGTGAAACACATTTGCAAACATATATATATTGTTTCACATGTTTTTCTTGCTTATTGTGAGCCAACATGTACAATGACCATTGTTTTGTTCCCCAGCAGCATTGAGTCGCCAGCTAGCCTGTCTTGTCTTGTCTATCTAGAGGTTTGGGTTGCGCAGGTACTGAGCCCCTGACCATGTGGCCCCAGGTGACAGCACGATGGGCTCCAGCATGGCGGGCCCCACGCACACGTAGGCGTACTTCCCGTACCACTGGTACTTTGACCCCGGGCTGAACACGTACACCTCCTCGAACCCTCTCCGCTGCACGCAAATGGAGTTCCTCCTCCCCTGCACCATCAAACGAATTTGATCAAAAGTTCAGATCGAATTTGAGAAATTTATTTCACTTTTATTACGAAAATTGAGCTGTCGTGTGTGAATTTTTTGTGTTTTTTTAGTAATATTATTTTCTTTCTACCTCAGTATTCCTTAACACATTTCTTAAACCGCTAAATGATACGTTTCATGCAAAACTTTCTTATATAAAAGTTGCTTTAAAATATTAACTAAATTTATTTTTCAAATTTATAATAAACAAAATTCAATTAATCACTGATAATTTTCTCGTTTTATCTGTCCTTAATTTTCATCCTCATTTTGCGAACACCATTTTGGTTTTGGTTTTACGTACGTACCCTGTCGATGATGGTGAATTGGCGGGGGGCGTGGCTGTAGATGCGGCACATCTCCTCGGTCATCCGCTTGTAGTCGTCGTCCTCCTCGCCGTCGGCCTCTTGCGCCCCCGCGCCGCCGCCGCCGCCGCCGGAGAGGACCGCGTCGAACCCCTTGGTGGCCCAGCGCCGCGCGAGCGTCGTCGCCGACGACGACCGCGACATGAAGTCCGGGGGCACGATGGCGAACTCCGAGAGCACGGGATCTATGGCGCGGTAGTCGGAGCCCTGGAGCCCCACGGCGTAGGTGGCGTCCGGCGTGCTCACGCGGAGGTGGGTGGACACCGCGGCGGACAGAGCCACCGGCGACGGCGAGGCGGCGTTCCTCGCCGTGAACTCCGTCGCCAGCGCCTCCGGGTGCAGCGTCACGACGCACCTCGCCTCGACGCCGCTCGCCTCCGGCGGCGCGGCGGAGGCCAGCTCGACCTCGATGGAGCCCGTGGGGCTCCCCCTGACGTCGCGGAGCGACCATGCGCCGCTCGGCGACCACGGCGGCATCCCGTCACCGCCTCCGCCGGCGGCGCCGCCGCAGCGGAGGTCCAGCGACACGCCGCCGCGGATGACGGCGCGGCCGCCGAGGCCCTCGGCGACGGTGGTGTGGATCACCTCGGTGGGGGCGCCGTGCCACATGGCCGGCTTGTAGGACGTGACGAGGCCGCCCGGGAGCAGCACGTGCGCGGCGCTGCCGTTGCGCAGCTCCATCTTGACGGCGCAGCTGCCGCCGACGGCCTCGAAGCTGACGCCGTGGCCGGCGAACTCCGCCGCCAGGTAGTCCACGTTGGGAGGGGCGGGTGCCGCCGCAGCCGCCGCCGCGTCTGCCGCCGTCGACGCCGGCGCCAATGCGCGCGCCTCAACACTTGCACCGGCCGGCCGCGCCCTCTGGCCGCCGCCGGCGGCGGCGGCGGCTAGCCGGGAAGAGTTGCAGAAGGCGAGCTGCTTCCATGAGGTGGTGAGAGGAGGTGGAGTGGCATGAGGAGGAGTGGTGGCAGTAGGAGTGCAGAACGCCATGGCCAATTCTTGCAAGAATTGGTCGAGTGGCAGTGTAGCCTTATCTGAAAGACTGCAAGTTCTCTCTATCTGT
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| CDS seq | ATGGCGTTCTGCACTCCTACTGCCACCACTCCTCCTCATGCCACTCCACCTCCTCTCACCACCTCATGGAAGCAGCTCGCCTTCTGCAACTCTTCCCGGCTAGCCGCCGCCGCCGCCGGCGGCGGCCAGAGGGCGCGGCCGGCCGGTGCAAGTGTTGAGGCGCGCGCATTGGCGCCGGCGTCGACGGCGGCAGACGCGGCGGCGGCTGCGGCGGCACCCGCCCCTCCCAACGTGGACTACCTGGCGGCGGAGTTCGCCGGCCACGGCGTCAGCTTCGAGGCCGTCGGCGGCAGCTGCGCCGTCAAGATGGAGCTGCGCAACGGCAGCGCCGCGCACGTGCTGCTCCCGGGCGGCCTCGTCACGTCCTACAAGCCGGCCATGTGGCACGGCGCCCCCACCGAGGTGATCCACACCACCGTCGCCGAGGGCCTCGGCGGCCGCGCCGTCATCCGCGGCGGCGTGTCGCTGGACCTCCGCTGCGGCGGCGCCGCCGGCGGAGGCGGTGACGGGATGCCGCCGTGGTCGCCGAGCGGCGCATGGTCGCTCCGCGACGTCAGGGGGAGCCCCACGGGCTCCATCGAGGTCGAGCTGGCCTCCGCCGCGCCGCCGGAGGCGAGCGGCGTCGAGGCGAGGTGCGTCGTGACGCTGCACCCGGAGGCGCTGGCGACGGAGTTCACGGCGAGGAACGCCGCCTCGCCGTCGCCGGTGGCTCTGTCCGCCGCGGTGTCCACCCACCTCCGCGTGAGCACGCCGGACGCCACCTACGCCGTGGGGCTCCAGGGCTCCGACTACCGCGCCATAGATCCCGTGCTCTCGGAGTTCGCCATCGTGCCCCCGGACTTCATGTCGCGGTCGTCGTCGGCGACGACGCTCGCGCGGCGCTGGGCCACCAAGGGGTTCGACGCGGTCCTCTCCGGCGGCGGCGGCGGCGGCGCGGGGGCGCAAGAGGCCGACGGCGAGGAGGACGACGACTACAAGCGGATGACCGAGGAGATGTGCCGCATCTACAGCCACGCCCCCCGCCAATTCACCATCATCGACAGGGGGAGGAGGAACTCCATTTGCGTGCAGCGGAGAGGGTTCGAGGAGGTGTACGTGTTCAGCCCGGGGTCAAAGTACCAGTGGTACGGGAAGTACGCCTACGTGTGCGTGGGGCCCGCCATGCTGGAGCCCATCGTGCTGTCACCTGGGGCCACATGGTCAGGGGCTCAGTACCTGCGCAACCCAAACCTCTAG
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| Protein seq | MAFCTPTATTPPHATPPPLTTSWKQLAFCNSSRLAAAAAGGGQRARPAGASVEARALAPASTAADAAAAAAAPAPPNVDYLAAEFAGHGVSFEAVGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTEVIHTTVAEGLGGRAVIRGGVSLDLRCGGAAGGGGDGMPPWSPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASPSPVALSAAVSTHLRVSTPDATYAVGLQGSDYRAIDPVLSEFAIVPPDFMSRSSSATTLARRWATKGFDAVLSGGGGGGAGAQEADGEEDDDYKRMTEEMCRIYSHAPRQFTIIDRGRRNSICVQRRGFEEVYVFSPGSKYQWYGKYAYVCVGPAMLEPIVLSPGATWSGAQYLRNPNL |
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| Function | Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 [UniProtKB/Swiss-Prot:Q9C503] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0748300 | Os03t0748300-01 | Chr03 | 30796483 | 30798275 | - | irgsp1_rep | ||
| CDS seq | ATGGCGTTCTGCACTCCTACTGCCACCACTCCTCCTCATGCCACTCCACCTCCTCTCACCACCTCATGGAAGCAGCTCGCCTTCTGCAACTCTTCCCGGCTAGCCGCCGCCGCCGCCGGCGGCGGCCAGAGGGCGCGGCCGGCCGGTGCAAGTGTTGAGGCGCGCGCATTGGCGCCGGCGTCGACGGCGGCAGACGCGGCGGCGGCTGCGGCGGCACCCGCCCCTCCCAACGTGGACTACCTGGCGGCGGAGTTCGCCGGCCACGGCGTCAGCTTCGAGGCCGTCGGCGGCAGCTGCGCCGTCAAGATGGAGCTGCGCAACGGCAGCGCCGCGCACGTGCTGCTCCCGGGCGGCCTCGTCACGTCCTACAAGCCGGCCATGTGGCACGGCGCCCCCACCGAGGTGATCCACACCACCGTCGCCGAGGGCCTCGGCGGCCGCGCCGTCATCCGCGGCGGCGTGTCGCTGGACCTCCGCTGCGGCGGCGCCGCCGGCGGAGGCGGTGACGGGATGCCGCCGTGGTCGCCGAGCGGCGCATGGTCGCTCCGCGACGTCAGGGGGAGCCCCACGGGCTCCATCGAGGTCGAGCTGGCCTCCGCCGCGCCGCCGGAGGCGAGCGGCGTCGAGGCGAGGTGCGTCGTGACGCTGCACCCGGAGGCGCTGGCGACGGAGTTCACGGCGAGGAACGCCGCCTCGCCGTCGCCGGTGGCTCTGTCCGCCGCGGTGTCCACCCACCTCCGCGTGAGCACGCCGGACGCCACCTACGCCGTGGGGCTCCAGGGCTCCGACTACCGCGCCATAGATCCCGTGCTCTCGGAGTTCGCCATCGTGCCCCCGGACTTCATGTCGCGGTCGTCGTCGGCGACGACGCTCGCGCGGCGCTGGGCCACCAAGGGGTTCGACGCGGTCCTCTCCGGCGGCGGCGGCGGCGGCGCGGGGGCGCAAGAGGCCGACGGCGAGGAGGACGACGACTACAAGCGGATGACCGAGGAGATGTGCCGCATCTACAGCCACGCCCCCCGCCAATTCACCATCATCGACAGGGGGAGGAGGAACTCCATTTGCGTGCAGCGGAGAGGGTTCGAGGAGGTGTACGTGTTCAGCCCGGGGTCAAAGTACCAGTGGTACGGGAAGTACGCCTACGTGTGCGTGGGGCCCGCCATGCTGGAGCCCATCGTGCTGTCACCTGGGGCCACATGGTCAGGGGCTCAGTACCTGCGCAACCCAAACCTCTAG
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| Protein seq | MAFCTPTATTPPHATPPPLTTSWKQLAFCNSSRLAAAAAGGGQRARPAGASVEARALAPASTAADAAAAAAAPAPPNVDYLAAEFAGHGVSFEAVGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTEVIHTTVAEGLGGRAVIRGGVSLDLRCGGAAGGGGDGMPPWSPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASPSPVALSAAVSTHLRVSTPDATYAVGLQGSDYRAIDPVLSEFAIVPPDFMSRSSSATTLARRWATKGFDAVLSGGGGGGAGAQEADGEEDDDYKRMTEEMCRIYSHAPRQFTIIDRGRRNSICVQRRGFEEVYVFSPGSKYQWYGKYAYVCVGPAMLEPIVLSPGATWSGAQYLRNPNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0748300 | RBH | 6.030187 | 6.904802 | 2.059236 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g53710 | RBH | 3.598307 | 3.955174 | 0.530087 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0034710 | RBH | 1.681137 | 2.283022 | 0.384834 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034390 | RBH | 0.448866 | 0.000000 | 1.784846 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0034480 | RBH | 6.456893 | 2.055970 | 2.020913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0034790 | RBH | 0.795368 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034360 | RBH | 14.051840 | 0.000000 | 3.119328 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0527100 | RBH | 38.654132 | 7.474438 | 5.1727035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034150 | RBH | 2.163321 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0526100 | RBH | 28.5144485 | 3.952868 | 3.302888 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0034570 | RBH | 0.432775 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0034610 | RBH | 1.366324 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034310 | RBH | 7.856550 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034400 | RBH | 0.970279 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034350 | RBH | 1.304788 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034150 | RBH | 1.708622 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0033980 | RBH | 6.825753 | 0.000000 | 2.013101 |
