Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0722100 | OGI:03082310 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:29299399-29302083 | ||||||||
| Gene Symbol | OsCHB706, CHB706 | ||||||||||
| DNA seq | GATAGCTGAACATGTTGCTACAAAAACAAAAGCTCAGTGCATGCTGCACTTCCTTCAAATGCAAATTGAGGACCGCTTTCATGGCGATGAAGATATTAATCAAAATATCCAGGAAAACACAGAGCAAGCTTCAGCAGAAAAAGGCGCTGCTGAAATACCTGATAAAATGGAAGTTGAAGAGAAAGCAGAAGGAAAAGATACTGCAGGTGAGAAAACTCCAGAGAAAGCAGAGGGCAATAGTGTAGAAGCACAAACGGAAGATGGAAATGCTATTGAAAATAAAGATGCCAATAATTCAGGTGGCACAGATTCAGTTAAATCTCTAAACACTGATGAGCCAAAAAAATCTTCTGATGCTGACCCACCGAAAAGTTCATCCGATGCTGAACCTGTAGTGAAGGAAAATTCTGTTGATGTTGATACTTCTCGTGAAAATGCATCAAACTTTGCTATTGATACATTGAAATCCGCATTTGAGGCTGTTGGTTACTTCCCAGAACATGAAGGTTCATTTGCTGATGCAGGAAATCCTGTTATGGCACTGGTAAGCATGCTACCCTTGGAAATTTATTATTACCATACAGTATGTACTGTCCGTAGGTCTAAAAATTGTTTTTGCAGGCATCATTTTTAGCTGGTCTTGTGGAAGATGACACTGCAACCAATTCATGTCGAAGTTCACTAAAAGCTATCTCTGAGGTTTCTCCTGCACTTCAGTTGGCAACTAGACACTGCTTTATTCTTGAGGATCCACCAAGTGATGTGAAAGACATGTCTGGCAATGCAAGGTCAGCAATGGTTGCACTTTTATAACATTGAAACGCTATCATGAGATTTTGCTGATGAGCTAAATGCAATTTTGCAGTACTACAAGCACAGATGGTGATAAAAGAAAAGACAAGGATAAGACTCAAGATTCAATTGATAGTGAAGTGGAAGGCATAAATAAAAAGGGAGAGACGGTTCTATCTGTTGAAGGGAAAAAAAGTTCTCCCATTTCACCAAAAGGCCAAGACACAGACAAAAAGGATGAATGTGATGAGGACCCCTCAGTGGATCCTAAACACAATAATGGTAAGGAGTCAGATGATCCTGTTTCTCTGGATAAAAGTGTGTCCAACAACAAAAAAGGTATAAACTCCAGTAAAGATTCAGTTACTCCACTGAATATTACAAATCAATGTGGTATGATAACTTCTCAAGGGTTTGTCACAGGAAATACCATGGAAACAAGTAATCCTGAAATGATAGAGGACAAAGCAAGTTCTGAAGTCAACCCTGCTGATGATTCATCTTTAGAAGGCAAGGTTGAGATGAAGAAGACCAAAGATGCAGTTGCTAATGCAACTACCGCACAGGAACAAAAGCAAAGCCAAATATTGGAAAATGGCAAGATGGAAGGTATTTCATCAAAACCTTTATCTGATTCAAGTACTACAATTCAATTAAAGCTTCTCATTATGTACTAACCCTCAAGGATTAAGTTGTTTGCGTGTCATCTTATTGCTGCTAACATTACCTAAGATTCTTCATGTTACTAAAGATCCATCATCCATCATAATAATTTGTTACCAATTCGTGGTTTTGTCTGAGAAGCATCACTAACTAACTTAAATTGAATATTTAAGATTTTACCAGCAATCATATTACTTTATCATGTTCTTCGTTCATTAATATTTTGTCTGATTGGTTCCTGCCTGCCTGGCACGAACCCACTCTGTTAACACCAGCAACACACACACACACACACGAGGGTAAATCTGTCTTTATCAGTATATGCAACCTTATATCAATTATCTAGCACCTCTCACTAAGATTTGCCTGATGAGGGATTTATGATGTAGAATCATAATACCACAGTGAACTATATGAACTAGTACTACACATACAGGAAATGCAAACACTGCAAAGATGGTGAAAACTGTGAACTTCAACTCTGGTCCTCTTACCTACGATACCTGTCCTGCAGAACCTAAGAGTACTGAAGATGTTGCTGCCGATGAAGAGAACAGCTCTAGAGTAACCGCCAACCTCACGGATTCCATAACTAGGCTGAAACGAGCAGCCGCTACAGCTATTTCTGCAGCTGCTGTGAAGGCAAAACTCCTTGCTGACCATGAGGAAGAACAAGTCCGTCAGCTGGCTGCGCTGATGATTGACAAACTGGTAATATGGAACCCCACTCGCTTTACTCTCCGAATGGTCCGTTCTGTGTTATGCGCCTCTAATGATTTTTGTTCTTTTTCTCATGCAGTATCGGAAAGTAGAGGCGAAGGTGTCTTTTCTCACCGAAGTTGAACACCTGGTCCAGAGAACAAGAGAATACACTGAAAAGACTAGAAAGAAGCTTCTGATGGAGCGAAATGCGATAATCGCTGCCCGCATGGGTTCATTGCCATCTAGGCCAAACCAGCCCGGTGCAGCCGGCAACAGATTACCAGCTGGATATGGAGGCCCCATCGTGAGACCACCACCAAACGCAATGCCCCGCCCTAGCAGCTGATCGAGCTGACCGTGGTGATCCGGACAACTAGTGCTCTATACCCCCATTCTTTAGAGGGATATCTCGAAAGCCATGAACTGTGTTGTAGTAGTACCATTCTTTTAGAAGCAGAGAATACTGTATGACGATCTGTTGTTACTGCATAAGAGCTTCTATAAAATTTTTCACGATTTTCACTTTGG
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| CDS seq | ATAGCTGAACATGTTGCTACAAAAACAAAAGCTCAGTGCATGCTGCACTTCCTTCAAATGCAAATTGAGGACCGCTTTCATGGCGATGAAGATATTAATCAAAATATCCAGGAAAACACAGAGCAAGCTTCAGCAGAAAAAGGCGCTGCTGAAATACCTGATAAAATGGAAGTTGAAGAGAAAGCAGAAGGAAAAGATACTGCAGGTGAGAAAACTCCAGAGAAAGCAGAGGGCAATAGTGTAGAAGCACAAACGGAAGATGGAAATGCTATTGAAAATAAAGATGCCAATAATTCAGGTGGCACAGATTCAGTTAAATCTCTAAACACTGATGAGCCAAAAAAATCTTCTGATGCTGACCCACCGAAAAGTTCATCCGATGCTGAACCTGTAGTGAAGGAAAATTCTGTTGATGTTGATACTTCTCGTGAAAATGCATCAAACTTTGCTATTGATACATTGAAATCCGCATTTGAGGCTGTTGGTTACTTCCCAGAACATGAAGGTTCATTTGCTGATGCAGGAAATCCTGTTATGGCACTGGCATCATTTTTAGCTGGTCTTGTGGAAGATGACACTGCAACCAATTCATGTCGAAGTTCACTAAAAGCTATCTCTGAGGTTTCTCCTGCACTTCAGTTGGCAACTAGACACTGCTTTATTCTTGAGGATCCACCAAGTGATGTGAAAGACATGTCTGGCAATGCAAGTACTACAAGCACAGATGGTGATAAAAGAAAAGACAAGGATAAGACTCAAGATTCAATTGATAGTGAAGTGGAAGGCATAAATAAAAAGGGAGAGACGGTTCTATCTGTTGAAGGGAAAAAAAGTTCTCCCATTTCACCAAAAGGCCAAGACACAGACAAAAAGGATGAATGTGATGAGGACCCCTCAGTGGATCCTAAACACAATAATGGTAAGGAGTCAGATGATCCTGTTTCTCTGGATAAAAGTGTGTCCAACAACAAAAAAGGAAATACCATGGAAACAAGTAATCCTGAAATGATAGAGGACAAAGCAAGTTCTGAAGTCAACCCTGCTGATGATTCATCTTTAGAAGGCAAGGTTGAGATGAAGAAGACCAAAGATGCAGTTGCTAATGCAACTACCGCACAGGAACAAAAGCAAAGCCAAATATTGGAAAATGGCAAGATGGAAGAACCTAAGAGTACTGAAGATGTTGCTGCCGATGAAGAGAACAGCTCTAGAGTAACCGCCAACCTCACGGATTCCATAACTAGGCTGAAACGAGCAGCCGCTACAGCTATTTCTGCAGCTGCTGTGAAGGCAAAACTCCTTGCTGACCATGAGGAAGAACAAGTCCGTCAGCTGGCTGCGCTGATGATTGACAAACTGTATCGGAAAGTAGAGGCGAAGGTGTCTTTTCTCACCGAAGTTGAACACCTGGTCCAGAGAACAAGAGAATACACTGAAAAGACTAGAAAGAAGCTTCTGATGGAGCGAAATGCGATAATCGCTGCCCGCATGGGTTCATTGCCATCTAGGCCAAACCAGCCCGGTGCAGCCGGCAACAGATTACCAGCTGGATATGGAGGCCCCATCGTGAGACCACCACCAAACGCAATGCCCCGCCCTAGCAGCTGA
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| Protein seq | IAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTEQASAEKGAAEIPDKMEVEEKAEGKDTAGEKTPEKAEGNSVEAQTEDGNAIENKDANNSGGTDSVKSLNTDEPKKSSDADPPKSSSDAEPVVKENSVDVDTSRENASNFAIDTLKSAFEAVGYFPEHEGSFADAGNPVMALASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFILEDPPSDVKDMSGNASTTSTDGDKRKDKDKTQDSIDSEVEGINKKGETVLSVEGKKSSPISPKGQDTDKKDECDEDPSVDPKHNNGKESDDPVSLDKSVSNNKKGNTMETSNPEMIEDKASSEVNPADDSSLEGKVEMKKTKDAVANATTAQEQKQSQILENGKMEEPKSTEDVAADEENSSRVTANLTDSITRLKRAAATAISAAAVKAKLLADHEEEQVRQLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEKTRKKLLMERNAIIAARMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPRPSS |
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| Function | SWI/SNF complex subunit SWI3D [UniProtKB/Swiss-Prot:Q8VY05] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0722100 | Os03t0722100-01 | Chr03 | 29299399 | 29302083 | + | irgsp1_rep | ||
| CDS seq | ATAGCTGAACATGTTGCTACAAAAACAAAAGCTCAGTGCATGCTGCACTTCCTTCAAATGCAAATTGAGGACCGCTTTCATGGCGATGAAGATATTAATCAAAATATCCAGGAAAACACAGAGCAAGCTTCAGCAGAAAAAGGCGCTGCTGAAATACCTGATAAAATGGAAGTTGAAGAGAAAGCAGAAGGAAAAGATACTGCAGGTGAGAAAACTCCAGAGAAAGCAGAGGGCAATAGTGTAGAAGCACAAACGGAAGATGGAAATGCTATTGAAAATAAAGATGCCAATAATTCAGGTGGCACAGATTCAGTTAAATCTCTAAACACTGATGAGCCAAAAAAATCTTCTGATGCTGACCCACCGAAAAGTTCATCCGATGCTGAACCTGTAGTGAAGGAAAATTCTGTTGATGTTGATACTTCTCGTGAAAATGCATCAAACTTTGCTATTGATACATTGAAATCCGCATTTGAGGCTGTTGGTTACTTCCCAGAACATGAAGGTTCATTTGCTGATGCAGGAAATCCTGTTATGGCACTGGCATCATTTTTAGCTGGTCTTGTGGAAGATGACACTGCAACCAATTCATGTCGAAGTTCACTAAAAGCTATCTCTGAGGTTTCTCCTGCACTTCAGTTGGCAACTAGACACTGCTTTATTCTTGAGGATCCACCAAGTGATGTGAAAGACATGTCTGGCAATGCAAGTACTACAAGCACAGATGGTGATAAAAGAAAAGACAAGGATAAGACTCAAGATTCAATTGATAGTGAAGTGGAAGGCATAAATAAAAAGGGAGAGACGGTTCTATCTGTTGAAGGGAAAAAAAGTTCTCCCATTTCACCAAAAGGCCAAGACACAGACAAAAAGGATGAATGTGATGAGGACCCCTCAGTGGATCCTAAACACAATAATGGTAAGGAGTCAGATGATCCTGTTTCTCTGGATAAAAGTGTGTCCAACAACAAAAAAGGAAATACCATGGAAACAAGTAATCCTGAAATGATAGAGGACAAAGCAAGTTCTGAAGTCAACCCTGCTGATGATTCATCTTTAGAAGGCAAGGTTGAGATGAAGAAGACCAAAGATGCAGTTGCTAATGCAACTACCGCACAGGAACAAAAGCAAAGCCAAATATTGGAAAATGGCAAGATGGAAGAACCTAAGAGTACTGAAGATGTTGCTGCCGATGAAGAGAACAGCTCTAGAGTAACCGCCAACCTCACGGATTCCATAACTAGGCTGAAACGAGCAGCCGCTACAGCTATTTCTGCAGCTGCTGTGAAGGCAAAACTCCTTGCTGACCATGAGGAAGAACAAGTCCGTCAGCTGGCTGCGCTGATGATTGACAAACTGTATCGGAAAGTAGAGGCGAAGGTGTCTTTTCTCACCGAAGTTGAACACCTGGTCCAGAGAACAAGAGAATACACTGAAAAGACTAGAAAGAAGCTTCTGATGGAGCGAAATGCGATAATCGCTGCCCGCATGGGTTCATTGCCATCTAGGCCAAACCAGCCCGGTGCAGCCGGCAACAGATTACCAGCTGGATATGGAGGCCCCATCGTGAGACCACCACCAAACGCAATGCCCCGCCCTAGCAGCTGA
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| Protein seq | IAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTEQASAEKGAAEIPDKMEVEEKAEGKDTAGEKTPEKAEGNSVEAQTEDGNAIENKDANNSGGTDSVKSLNTDEPKKSSDADPPKSSSDAEPVVKENSVDVDTSRENASNFAIDTLKSAFEAVGYFPEHEGSFADAGNPVMALASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFILEDPPSDVKDMSGNASTTSTDGDKRKDKDKTQDSIDSEVEGINKKGETVLSVEGKKSSPISPKGQDTDKKDECDEDPSVDPKHNNGKESDDPVSLDKSVSNNKKGNTMETSNPEMIEDKASSEVNPADDSSLEGKVEMKKTKDAVANATTAQEQKQSQILENGKMEEPKSTEDVAADEENSSRVTANLTDSITRLKRAAATAISAAAVKAKLLADHEEEQVRQLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEKTRKKLLMERNAIIAARMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPRPSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0722100 | RBH | 3.152948 | 5.764953 | 6.804504 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g51220 | RBH | 2.141935 | 2.882154 | 1.761717 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0032890 | RBH | 1.191833 | 17.068350 | 8.363330 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0032600 | RBH | 0.445477 | 3.872691 | 3.845300 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0032660 | RBH | 2.675682 | 6.277493 | 10.772121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0032960 | RBH | 0.669777 | 0.587121 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0032560 | RBH | 12.011147 | 21.001776 | 13.777081 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0503100 | RBH | 11.190048 | 23.5285915 | 16.2517955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032290 | RBH | 0.498967 | 1.261678 | 1.817675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0502200 | RBH | 17.1806585 | 20.4269305 | 23.9309655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0032740 | RBH | 0.408262 | 0.248595 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0032750 | RBH | 0.970330 | 12.382846 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0032540 | RBH | 12.410022 | 29.419563 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0032500 | RBH | 3.494312 | 1.008670 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0032470 | RBH | 0.292533 | 5.144397 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032290 | RBH | 1.428581 | 8.055067 | 3.836505 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032140 | RBH | 2.604494 | 25.563622 | 11.289352 |
