Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0688600 | OGI:03077580 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:27473734-27474424 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGCGAGCTTCCATGCCGCTCTCCTCCTCCTCTTCTTCCTCCTCTCGGCCGTGGCCGGGCGAGACCACCACCTGGTGGTGGAGAAGTACGGTGTCAGCATGAAAGGCGCCGACGGCGACGTGGTGCACCGTGCACCTGGCCGTGCACAAACACGACTACTCCTTCGCTGGCTTCGCCAACCGAAGCGGCCATTGGCACGTCTTCCCCGGTAATGAGGACGTCCTCCCCGACAACGCCAGGCGTCTCCCGTTCCGCAACACCTACCGCGACCTTATTGGCGGCCTCGAGAACATCCCCGGCCTGCCGCTCAGGAGGGCGGCCTCGCTGCGCGCCATCGGGGCACTGTCCTCCTACGACGCCGGTGCCACCGGCGAGGAGGCGATGAGGCGTGGCGTGGCAACACTGTCGATGGTGCTGACCCAAGCCCTGCGGCTAAGGCCAGTCGGGGAGACCGTGTCGAGCAGGTGGGAGAGCGGTGAGGCGCGCGTGGCGGCGGAGCACCTGCCGTACATCGAGCACTGGTACACCATGTCGTTCGAGGTCCTCTGGTGGAGGCGCACCGGGAGGTGGGACAGCCCGTTCACTGAGCTGCTGAGGAGGCGTGCCGGCGAGGCGCTCGCCGTGGTCCGTGTGATCGCGAACAAGAGCTTCGTGCAGCTGCTGCGGGCTCACAGCCACGGCGCCTGA
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| CDS seq | ATGGCGGCGAGCTTCCATGCCGCTCTCCTCCTCCTCTTCTTCCTCCTCTCGGCCGTGGCCGGGCGAGACCACCACCTGGTGGTGGAGAAGTACGGTGTCAGCATGAAAGGCGCCGACGGCGACGTGGTGCACCGTGCACCTGGCCGTGCACAAACACGACTACTCCTTCGCTGGCTTCGCCAACCGAAGCGGCCATTGGCACGTCTTCCCCGGCGTCTCCCGTTCCGCAACACCTACCGCGACCTTATTGGCGGCCTCGAGAACATCCCCGGCCTGCCGCTCAGGAGGGCGGCCTCGCTGCGCGCCATCGGGGCACTGTCCTCCTACGACGCCGGTGCCACCGGCGAGGAGGCGATGAGGCGTGGCGTGGCAACACTGTCGATGGTGCTGACCCAAGCCCTGCGGCTAAGGCCAGTCGGGGAGACCGTGTCGAGCAGGTGGGAGAGCGGTGAGGCGCGCGTGGCGGCGGAGCACCTGCCGTACATCGAGCACTGGTACACCATGTCGTTCGAGGTCCTCTGGTGGAGGCGCACCGGGAGGTGGGACAGCCCGTTCACTGAGCTGCTGAGGAGGCGTGCCGGCGAGGCGCTCGCCGTGGTCCGTGTGATCGCGAACAAGAGCTTCGTGCAGCTGCTGCGGGCTCACAGCCACGGCGCCTGA
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| Protein seq | MAASFHAALLLLFFLLSAVAGRDHHLVVEKYGVSMKGADGDVVHRAPGRAQTRLLLRWLRQPKRPLARLPRRLPFRNTYRDLIGGLENIPGLPLRRAASLRAIGALSSYDAGATGEEAMRRGVATLSMVLTQALRLRPVGETVSSRWESGEARVAAEHLPYIEHWYTMSFEVLWWRRTGRWDSPFTELLRRRAGEALAVVRVIANKSFVQLLRAHSHGA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0688600 | Os03t0688600-00 | Chr03 | 27473734 | 27474424 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGCGAGCTTCCATGCCGCTCTCCTCCTCCTCTTCTTCCTCCTCTCGGCCGTGGCCGGGCGAGACCACCACCTGGTGGTGGAGAAGTACGGTGTCAGCATGAAAGGCGCCGACGGCGACGTGGTGCACCGTGCACCTGGCCGTGCACAAACACGACTACTCCTTCGCTGGCTTCGCCAACCGAAGCGGCCATTGGCACGTCTTCCCCGGCGTCTCCCGTTCCGCAACACCTACCGCGACCTTATTGGCGGCCTCGAGAACATCCCCGGCCTGCCGCTCAGGAGGGCGGCCTCGCTGCGCGCCATCGGGGCACTGTCCTCCTACGACGCCGGTGCCACCGGCGAGGAGGCGATGAGGCGTGGCGTGGCAACACTGTCGATGGTGCTGACCCAAGCCCTGCGGCTAAGGCCAGTCGGGGAGACCGTGTCGAGCAGGTGGGAGAGCGGTGAGGCGCGCGTGGCGGCGGAGCACCTGCCGTACATCGAGCACTGGTACACCATGTCGTTCGAGGTCCTCTGGTGGAGGCGCACCGGGAGGTGGGACAGCCCGTTCACTGAGCTGCTGAGGAGGCGTGCCGGCGAGGCGCTCGCCGTGGTCCGTGTGATCGCGAACAAGAGCTTCGTGCAGCTGCTGCGGGCTCACAGCCACGGCGCCTGA
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| Protein seq | MAASFHAALLLLFFLLSAVAGRDHHLVVEKYGVSMKGADGDVVHRAPGRAQTRLLLRWLRQPKRPLARLPRRLPFRNTYRDLIGGLENIPGLPLRRAASLRAIGALSSYDAGATGEEAMRRGVATLSMVLTQALRLRPVGETVSSRWESGEARVAAEHLPYIEHWYTMSFEVLWWRRTGRWDSPFTELLRRRAGEALAVVRVIANKSFVQLLRAHSHGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0688600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g48280 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0687700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030570 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0030300 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0030360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0030460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0030160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0473600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029880 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0474400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0030200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0030270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0030230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0030040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0030000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G030020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029950 | RBH | 0.0 | 0.0 | 0.0 |
