Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0686100 | OGI:02034490 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:27371197-27372872 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGTACAAACATGTGAATATCAAATATTATTCTGACAGGGAAATATGCTTAAGTAATGGTGTCCTCCAAGCTTACAATCGTGATTAACTTGCTCCACTTAAGTCATGCCCATCACCTTGCCTAATGCCATCCACCAAACCTGCAATCCTGATAAAATTGCTCCACTGAAGTCATATGCATCACATTGTGCCTAATTCCATCCTCCAAACCTGTGGTCAGAGGTGCCACCAGGTATATATTAAGGTTGTCTCCTCTTGCAAAGAAGAAAATAAAAGGACTACCTATTAGCAACTTGCGAGCAATGGCAGGATAATCCCAGATCAATGCCGATATAAAAATGAAAATTATGTATGCTGTAGTAGTGCTCGATATAAAAATGAAATTATATATGTTGTAGTAGTTCTAGACTTATAGAGCATCATGGAATGCGTTTTGGTCGCGTCGCATGCCCCTGGGGCAGAGGTTGGGGATATAGCACATCTTCTGCTTCAAAATAAAATATCTTCTTTATCTAAAATAAGGTTTATCTCTTTGGAAAATATATTTCACCAAAAATTACCAAAATTCTATCAATTCACCAACAACTGCTAATTGGGAGCATTTAAGCCTTGCTAATGAAAAGGTACACACTCAAATTCGTAGACCAGAAAAGGAGAGTAGCAATTCCTATTCAGAATCAGTTGTTTGTACCTCTACATACACTAAGCTGAGCTTATCTAATATCTAATAGGTTCATACTATGAAAATATATCCATTTATCCTTGTCTATTCATAGTAAAATAGTAAAAAACCTAAAGTAAAGAAATAATCTTGCATATATGGATATTACCTTTTTTTTTTTTGCCTGTGGAGTACATGAACTCAGATATATCAACCAAAGGCCAATCAATGGCAAATAAAAGAACAAAATCTCCTTGGCCCTCCTCATTGAGCATCTTAAAGCTAAAAGCCATCAAATAAAGGCCGTTCTTCCATTATGCTCACTCCATCCCAGCATATTTGCATATGCTTGTATTAACTGCAGAGACAATTATGGCAGTTTTTTTAGCGTGGCTAGCTATAGAAATCAAATGGTGGATTGCAGTACCACATTAAATCAGAAATTCAGATTTACCTTTTTAGGCTACATAAATAAAATATAAATCTTTCATGTTCTCATGAATAACCAATAAAATCAACCTTTTCAACATTAACCACATCCTTGGGAGTAGTCATAATGTTGTATCCTTCAATTTTTGCACAAATTAGCTTTTTATGCCAAAAGTAAAAAAAGAATGTTTCGTTATAACCAAGGGAGATCGAACCAAAAGAGTCAAAGAATTAGAACATCTAAATACCCAATATACTAATCAGCTCCACACACGCTCTTCCAAAGCACAGGTCCCGCCCGAAATACTTCTGTCTGATTTGTATCACAATTGGGATTCCTCTGAAAGAACATGATCCAAATTTATAACTCTCGTTGATCTGGCATTGCTGTTCCATAATGGACCTCTAGCTTTGTTTTCAATGGCATGTTGCAGAACATATCATGATGTATTTGATAGGTGCATGTACATGCTGTCAAGAAAAAAATCAAGGTCTATTAGAATTAAGTTTTACAATGGGAATAATTATAAGCTTCCATCGAGCCTCTTCTCTATCAGTGATTTGGATTATCTGCACTTAAAAAGATG
More
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| CDS seq | TGGAAGAACGGCCTTTATTTGATGGCTTTTAGCTTTAAGATGCTCAATGAGGAGGGCCAAGGAGATTTTGTTCTTTTATTTGCCATTGATTGGCCTTTGGTTGATATATCTGAGTTCATGTACTCCACAGGCAAAAAAAAAAAAGGTAATATCCATATATGCAAGATTATTTCTTTACTTTAG |
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| Protein seq | WKNGLYLMAFSFKMLNEEGQGDFVLLFAIDWPLVDISEFMYSTGKKKKGNIHICKIISLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0686100 | Os03t0686100-01 | Chr03 | 27371197 | 27372872 | - | irgsp1_rep | ||
| CDS seq | TGGAAGAACGGCCTTTATTTGATGGCTTTTAGCTTTAAGATGCTCAATGAGGAGGGCCAAGGAGATTTTGTTCTTTTATTTGCCATTGATTGGCCTTTGGTTGATATATCTGAGTTCATGTACTCCACAGGCAAAAAAAAAAAAGGTAATATCCATATATGCAAGATTATTTCTTTACTTTAG |
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| Protein seq | WKNGLYLMAFSFKMLNEEGQGDFVLLFAIDWPLVDISEFMYSTGKKKKGNIHICKIISLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0686100 | RBH | 0.618085 | 0.575618 | 1.887372 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030440 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013540 | SBH | 0.176191 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0030230 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013540 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013370 | SBH | 2.457631 | 5.271906 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0196800 | RBH | 0 | 0 | 0.0090845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013280 | SBH | 0.000000 | 0.0 | 0.273181 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0208500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0013480 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013470 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013540 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013410 | SBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013350 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
