Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0680700 | OGI:03076690 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:27051401-27053435 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGAGCTCACGAGGAGGACGAAGCGCCGCCGCCGCCGCTGCCGGCGTCGTCGTCGTCGAACTCGTCGTTGTACATCTCCTCCACCATGGGCTTCCACAGCCGCACTCGCGCGTTGATGAACCAGTTCGATATCTATATATGATTATGCAGCAATGTGTCAGTGTTAGCACGCAGAATATTGTTTGATTAATCAATGAGACGGTTGTTAATTAATCTCGTACTTGGGTTCTGCTTAGACCCGTAGCCACGGCCAGCATGAGCTTCTCGTTGTCATTCGGATACCTGCAGAAATTTATTTAAATTTGAACTGTGAGTGTAGTAGCTTGGTTTAGCATTTTGATCTCCTCTTGATCAAGGAGTTTAGTTTCGCTATTCATTGATCATCTTGTTTACCTAACATTTCACCATTGTATACATTAGACGTGCCCAATATTAAAAATAACTGCAGCTTTAATATATTATTTTTCTTCATACTGGTAAGGATCCGTACTAAAGTAGGAGTTTTTTTTTCTCAATTTTAAGTTGAAGTATTGTTTGTTAGAAAATGTATTACTGGTTTTGAAAAAGATGATCATAGATAGGAAAATATAAATCACATGACAAATAAAATACTAGCCTCAAAAGAGTTTGGTTAGAGCTAAAAATGAACTTTGTTAATGGAATTTCACACTCAATTGTTTTTTTCTCTGATCAAACTTCTTTAAACATGGATAAAAAAGTAGTAACATTTACAACACTAAATCAATTTTACTAAATCGAACATTAAATATATTATTATAGTATTTTTATTCTGTGTTAAAAATATTCCTATGTTTTTATATAAGCTTGATTAAACTTAAATAATTTAAGTTTAGCTAAGGAAAAAAAAAATCTAAGTGACTTACAATATGAAACGGAAATATGAAATGGAGGGAGTAACTGTTTCCTTAATCTTCACATGACCCATTTTCAAATAACTTTTAGGAAAAACTATTTGATTAGACATAGTTTTATTTGCAAGACACTATATGATCGCAGTGTGAAACAGTGAAAGTGAGATTATTTGGACGGCTTACGGGTGGAGGAAATGGTCGAAGAGCCATGCCCGGAGCACGCCCACGGCGTCCTCCGGCAATCCCCGGAGCGGCCTCCACGCCTGCTCCGCCCTCGCCGCCGCCGCCTGCTTCGTCCGCCGGACCACCCTGTTCACCACCTCCTCCTCCTCCTCGCCGTCGCCCTCGTCGTCCTCCTCCATGGCGTCCCGGGCCAGCCGCAGCAACGCCGACCTCGTCCTGGCCGCCGCGGCGGCGTGGAGCCTGAGCTTGCGCAGTATGGCGCGGCGCAGGCTGCCGAAGTGGTGCGACATGGCCTGCGCCATGAGCGCCGTGTACCCGGCCGTGGCGCCGGCGCCCAGCGCCGGCTCGAACGACGCCGACACCCGCCTCAGCTCCCCGAAGTAGTGCTCGTGCCGGCTCTCCAGCTGCAGCGCGCGGGGGGCGAATCGGCGGCGAGAAAGCGCCATGGGTTAGCCATTATTACTCGCTCGATGCCTCGATCCAAATTCCATGGAGGAGAAGGGGGAGGGCTTTGCATTGTAAGTACGGACCTCGCTGAGAAGGCTGAGGAGCTTGGCTTGGACGCCGCCGCCGCCGCCGCCAATGCCGGTGCTCTTGCCGTCGTGCGGGAAGCTCGCCACCGCCTCGTCGTCGTCGTCGCCACCTCGCGCGCTGGCGGCGGCGGCGGACACCGCCTCGCGGAGCAGCTCCTGCGCCGGCAGCAGGTACCTCGAACCACGCAACGCGGAAACCATCGTCGCCGGCGCGGCGCCACCGGCACCGCAGCAGCAGCGCGAGCGGCCGCCACCGTCGTCTTCAGCCGCCGCGGCGCCGGACCCGAGGGTCAGCACGACCATCGGACCAGCGCCGCCGCAGCCGCTCGACCCGTCCCTCCGGTGGCTCTCGGCACCGGCGCCGGCGATCTCCTCCGGCCGGTGGTGGTGCAGCTGGCAGTAGTGGCCGCCACATCGCTGCGAGTGGAGCTGCTTGCTGGCCACCAT
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| CDS seq | ATGGTGGCCAGCAAGCAGCTCCACTCGCAGCGATGTGGCGGCCACTACTGCCAGCTGCACCACCACCGGCCGGAGGAGATCGCCGGCGCCGGTGCCGAGAGCCACCGGAGGGACGGGTCGAGCGGCTGCGGCGGCGCTGGTCCGATGGTCGTGCTGACCCTCGGGTCCGGCGCCGCGGCGGCTGAAGACGACGGTGGCGGCCGCTCGCGCTGCTGCTGCGGTGCCGGTGGCGCCGCGCCGGCGACGATGGTTTCCGCGTTGCGTGGTTCGAGGTACCTGCTGCCGGCGCAGGAGCTGCTCCGCGAGGCGGTGTCCGCCGCCGCCGCCAGCGCGCGAGGTGGCGACGACGACGACGAGGCGGTGGCGAGCTTCCCGCACGACGGCAAGAGCACCGGCATTGGCGGCGGCGGCGGCGGCGTCCAAGCCAAGCTCCTCAGCCTTCTCAGCGAGCTGGAGAGCCGGCACGAGCACTACTTCGGGGAGCTGAGGCGGGTGTCGGCGTCGTTCGAGCCGGCGCTGGGCGCCGGCGCCACGGCCGGGTACACGGCGCTCATGGCGCAGGCCATGTCGCACCACTTCGGCAGCCTGCGCCGCGCCATACTGCGCAAGCTCAGGCTCCACGCCGCCGCGGCGGCCAGGACGAGGTCGGCGTTGCTGCGGCTGGCCCGGGACGCCATGGAGGAGGACGACGAGGGCGACGGCGAGGAGGAGGAGGAGGTGGTGAACAGGGTGGTCCGGCGGACGAAGCAGGCGGCGGCGGCGAGGGCGGAGCAGGCGTGGAGGCCGCTCCGGGGATTGCCGGAGGACGCCGTGGGCGTGCTCCGGGCATGGCTCTTCGACCATTTCCTCCACCCGTATCCGAATGACAACGAGAAGCTCATGCTGGCCGTGGCTACGGGTCTAAGCAGAACCCAAATATCGAACTGGTTCATCAACGCGCGAGTGCGGCTGTGGAAGCCCATGGTGGAGGAGATGTACAACGACGAGTTCGACGACGACGACGCCGGCAGCGGCGGCGGCGGCGCTTCGTCCTCCTCGTGA
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| Protein seq | MVASKQLHSQRCGGHYCQLHHHRPEEIAGAGAESHRRDGSSGCGGAGPMVVLTLGSGAAAAEDDGGGRSRCCCGAGGAAPATMVSALRGSRYLLPAQELLREAVSAAAASARGGDDDDEAVASFPHDGKSTGIGGGGGGVQAKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSHHFGSLRRAILRKLRLHAAAAARTRSALLRLARDAMEEDDEGDGEEEEEVVNRVVRRTKQAAAARAEQAWRPLRGLPEDAVGVLRAWLFDHFLHPYPNDNEKLMLAVATGLSRTQISNWFINARVRLWKPMVEEMYNDEFDDDDAGSGGGGASSSS |
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| Function | BEL1-like homeodomain protein 6 [UniProtKB/Swiss-Prot:O65685] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0680700 | Os03t0680700-00 | Chr03 | 27051401 | 27053435 | - | irgsp1_rep | ||
| CDS seq | ATGGTGGCCAGCAAGCAGCTCCACTCGCAGCGATGTGGCGGCCACTACTGCCAGCTGCACCACCACCGGCCGGAGGAGATCGCCGGCGCCGGTGCCGAGAGCCACCGGAGGGACGGGTCGAGCGGCTGCGGCGGCGCTGGTCCGATGGTCGTGCTGACCCTCGGGTCCGGCGCCGCGGCGGCTGAAGACGACGGTGGCGGCCGCTCGCGCTGCTGCTGCGGTGCCGGTGGCGCCGCGCCGGCGACGATGGTTTCCGCGTTGCGTGGTTCGAGGTACCTGCTGCCGGCGCAGGAGCTGCTCCGCGAGGCGGTGTCCGCCGCCGCCGCCAGCGCGCGAGGTGGCGACGACGACGACGAGGCGGTGGCGAGCTTCCCGCACGACGGCAAGAGCACCGGCATTGGCGGCGGCGGCGGCGGCGTCCAAGCCAAGCTCCTCAGCCTTCTCAGCGAGCTGGAGAGCCGGCACGAGCACTACTTCGGGGAGCTGAGGCGGGTGTCGGCGTCGTTCGAGCCGGCGCTGGGCGCCGGCGCCACGGCCGGGTACACGGCGCTCATGGCGCAGGCCATGTCGCACCACTTCGGCAGCCTGCGCCGCGCCATACTGCGCAAGCTCAGGCTCCACGCCGCCGCGGCGGCCAGGACGAGGTCGGCGTTGCTGCGGCTGGCCCGGGACGCCATGGAGGAGGACGACGAGGGCGACGGCGAGGAGGAGGAGGAGGTGGTGAACAGGGTGGTCCGGCGGACGAAGCAGGCGGCGGCGGCGAGGGCGGAGCAGGCGTGGAGGCCGCTCCGGGGATTGCCGGAGGACGCCGTGGGCGTGCTCCGGGCATGGCTCTTCGACCATTTCCTCCACCCGTATCCGAATGACAACGAGAAGCTCATGCTGGCCGTGGCTACGGGTCTAAGCAGAACCCAAATATCGAACTGGTTCATCAACGCGCGAGTGCGGCTGTGGAAGCCCATGGTGGAGGAGATGTACAACGACGAGTTCGACGACGACGACGCCGGCAGCGGCGGCGGCGGCGCTTCGTCCTCCTCGTGA
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| Protein seq | MVASKQLHSQRCGGHYCQLHHHRPEEIAGAGAESHRRDGSSGCGGAGPMVVLTLGSGAAAAEDDGGGRSRCCCGAGGAAPATMVSALRGSRYLLPAQELLREAVSAAAASARGGDDDDEAVASFPHDGKSTGIGGGGGGVQAKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSHHFGSLRRAILRKLRLHAAAAARTRSALLRLARDAMEEDDEGDGEEEEEVVNRVVRRTKQAAAARAEQAWRPLRGLPEDAVGVLRAWLFDHFLHPYPNDNEKLMLAVATGLSRTQISNWFINARVRLWKPMVEEMYNDEFDDDDAGSGGGGASSSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0680700 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g47730 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0636200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030100 | RBH | 5.126301 | 87.694458 | 23.151176 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029830 | RBH | 3.982397 | 11.823022 | 10.967001 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029890 | RBH | 10.675480 | 71.957626 | 47.255138 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029960 | RBH | 1.720887 | 1.378324 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029700 | RBH | 46.785767 | 37.917088 | 48.905960 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0467900 | RBH | 38.09865 | 39.538519 | 13.5143945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029410 | RBH | 2.668445 | 4.019807 | 6.220439 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0468800 | RBH | 47.861229 | 39.425089 | 6.2721555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029730 | RBH | 2.440638 | 0.964856 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029800 | RBH | 3.200483 | 37.075943 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029760 | RBH | 62.531040 | 68.488861 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029580 | RBH | 9.532903 | 4.589158 | 7.325520 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029540 | RBH | 4.524505 | 16.603373 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029550 | RBH | 4.423709 | 4.643849 | 8.976676 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029490 | RBH | 9.126161 | 83.445145 | 38.353500 |
