Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0643250 | OGI:07002590 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:24804681-24807161 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCTCATTACAGGTCAATAAACACACGCAGGCCATCGTGAGCTAGTTGTACTGGTATTCCTTCTCTGTGATCACATAATTTTACAAGTTGAACATCTCTTTCACAAAATAAGTGAAGAGCATAAATATTTCACCAACTATGCTTACCTGCTAGACCATTCTGCCAGCGTCTGATTTTCTTTGTGATGTTCGAATTCATGGTTCATTCCAATCAACAGAGCTCTCTTAGGACTTATTCTCTTGACAGCATTAAGAGTCTGAAAATTTTTGTATGCCATCAGGAAAAGAAAACATTGGGATGAACCAGCTTGAAAGGAATGGTTGAATAGTAAGGTCATACTAGGTCAATATTGCTTTGTCTGATGGTATCCAGTTCTAGGCTGGTTTTGATGGAAAGTACATGGAGTTTAAACCATTAAATTTTACCAAACTAATTAATGTTAAAAAAATCATAAGGTGCCTAAAACGTGTGATAAGAGTAACCTGACTCAGAGTAAGGTGGCAACTGCCAGCATCTCCCTGTTCACAGAGGGCGAAGTCTGTGTCAGATTATCAGTATGTTTTGCGTGAAAGAATAGCAAAGACGCTGTTTCAGACGACAAGCATATGGCACAGGCTTACCTCCCCGTGCAACTCGTTCGTTTCTAGTATAAGAAGATCAAGTTGTCCGGCACCAGACTTCGAAATTGCTGCGGGGGAAGAGTGCATCAGCAATGTCTTCCAATAAAACCAGAACAACCAAAAGGCATTCAAAAGAACCCAAAACATATATGTCTACGGATTAAGCATGATTTCAGCCATGGTAGTGCTATTTAATCATTGGCATGATGATAGATGCTCCAACTCCGGTCTTGAGAAAATTGTAGATTTTGATGAGCTGAAATTCCTAGTATTAAGTTTATGCCATTTTCAATATTTCACAAAGAAAAAAAAATTTGAGATACAGGTTTAGCAAGAGAACAAAAACATATACACAGTTGGATCCTTTTCTATTGTTTGCACTAAAAAAACAAAAGGCAAGCATTCTAATATTTGAAGAACGATGGAGGACAGTAAAAATCATACCATGCTCAGTTCTAGGTAGAATTCTTGAGACATCAGATAAATATGCAATTCTGGATCTCCTTCCAAATAGGAATCCTAAACAAACATAATCCTCTCCATGCATGACCTGAAAAGATAATAGCATGTTAGCAACTTCAACGAACAAACACAGAGAAACCAAAGCATCACTTCAAATTCACAACAAGTGGTTCTCACTGGCAGGGGCACAAACTCTAATCCTGATGATACAAATGGTTTGTCGATGTCACCCTCAATTATCGTCCAGTCGAGTTGAATGACTTGGGAACCTTCATCACCTTCCTCCAGCTTATTTTTCAATAAATAGGGGAATCTTGCTGCAACACTGTAAAATTCGTAGGTGATGTCACCATATCATACATGGTAATGATGGCTAATATGATATCAGGTATTAGTCCATTTTGAGTTCTAGAATGACCTGTTCATTGTGAAATGGGTGAGAAAAATAGGAACTTTGCCCAAGCCATTTCTACAACCACTTGGTTGTACCACCCAAACATCATCAAGACCTAAGACAGCATCCGCGTGTTCATGAGTGAGAATAATCTGCAATGCACTGAACCTTATCAGTCATGCCATCTATATGAATTGATCATCATCATTTGTAATAGATTGAAAATGGACAGTGCAGTAAGTAAGATCTCACCGAATCAACATAAGGAATCTTGTGGTGAGAAAACCACCGAAGAACTTGTTCTCTAAATGTCTTGCCGACATCGATTAGAATGTACTTATGGATTCCATCATGTTGGCAGTAATCTATCAAGAGGGAGGTGTTACACCTAAAAGCAGACAAGAGTGTTGCTGTATGAAGGCATTGTTTAGACATCGAGATGATAACTTCATAATGCAAATTTCTATTGTGGTTTTTGATGCAGTAACTACTTTGGAATCATATTTCAAGTCATACCAACAGCATTACTGGATTGGTAAAAATTTTCCCGTAGATAAACAACACACTGTAGCACTGCATAACAATGGTAAATAATACTTCAGAGTTCAGAGAGGAGGTCATTGCAGCACGAACTACTGAACACTTGAACAGCACTGAAAGAATGCTCTGAATTCTAATACAACATTTAACGAGAAATTGTCGGCCAATTCAGGAGAAATTTCACTATTTGCAAACGAGCAATTCTTCTGTAACGGCATCGTCTGACGGAACGAGAGAAAAAAAGAAAGAAAGGATCGAAATCATGCAAAGATCGGGCAGCTTGACTGGACTGCAGCGGCGGCGAGCAAAGAGCGCACCTGTAATTGGGGTTTCGCTCCGGCGGGAGGGAGAGGGAGTGGGAGCAGACGGGGCACGGCGGCGTGGACGGGTGGATGAGGCACCGGGCGTCGGGGAGCGCGCCGGAGCAGCCGGTGCCCAGGAAGATGACCGACGACGACGACTCCAT
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| CDS seq | ATGGAGTCGTCGTCGTCGGTCATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATCCACCCGTCCACGCCGCCGTGCCCCGTCTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGATAATTGAGGGTGACATCGACAAACCATTTGTATCATCAGGATTAGAGTTTGTGCCCCTGCCAGTCATGCATGGAGAGGATTATGTTTGTTTAGGATTCCTATTTGGAAGGAGATCCAGAATTGCATATTTATCTGATGTCTCAAGAATTCTACCTAGAACTGAGCATGCAATTTCGAAGTCTGGTGCCGGACAACTTGATCTTCTTATACTAGAAACGAACGAGTTGCACGGGGAGGGAGATGCTGGCAGTTGCCACCTTACTCTGAGTCAGACTCTTAATGCTGTCAAGAGAATAAGTCCTAAGAGAGCTCTGTTGATTGGAATGAACCATGAATTCGAACATCACAAAGAAAATCAGACGCTGGCAGAATGGTCTAGCAGAGAAGGAATACCAGTACAACTAGCTCACGATGGCCTGCGTGTGTTTATTGACCTGTAA
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| Protein seq | MESSSSVIFLGTGCSGALPDARCLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIHKYILIDVGKTFREQVLRWFSHHKIPYVDSIILTHEHADAVLGLDDVWVVQPSGCRNGLGKVPIFLTHFTMNSVAARFPYLLKNKLEEGDEGSQVIQLDWTIIEGDIDKPFVSSGLEFVPLPVMHGEDYVCLGFLFGRRSRIAYLSDVSRILPRTEHAISKSGAGQLDLLILETNELHGEGDAGSCHLTLSQTLNAVKRISPKRALLIGMNHEFEHHKENQTLAEWSSREGIPVQLAHDGLRVFIDL |
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| Function | Putative hydrolase C777.06c [UniProtKB/Swiss-Prot:O74545] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0643250 | Os03t0643250-00 | Chr03 | 24804681 | 24807161 | - | irgsp1_rep | ||
| CDS seq | ATGGAGTCGTCGTCGTCGGTCATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATCCACCCGTCCACGCCGCCGTGCCCCGTCTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGATAATTGAGGGTGACATCGACAAACCATTTGTATCATCAGGATTAGAGTTTGTGCCCCTGCCAGTCATGCATGGAGAGGATTATGTTTGTTTAGGATTCCTATTTGGAAGGAGATCCAGAATTGCATATTTATCTGATGTCTCAAGAATTCTACCTAGAACTGAGCATGCAATTTCGAAGTCTGGTGCCGGACAACTTGATCTTCTTATACTAGAAACGAACGAGTTGCACGGGGAGGGAGATGCTGGCAGTTGCCACCTTACTCTGAGTCAGACTCTTAATGCTGTCAAGAGAATAAGTCCTAAGAGAGCTCTGTTGATTGGAATGAACCATGAATTCGAACATCACAAAGAAAATCAGACGCTGGCAGAATGGTCTAGCAGAGAAGGAATACCAGTACAACTAGCTCACGATGGCCTGCGTGTGTTTATTGACCTGTAA
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| Protein seq | MESSSSVIFLGTGCSGALPDARCLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIHKYILIDVGKTFREQVLRWFSHHKIPYVDSIILTHEHADAVLGLDDVWVVQPSGCRNGLGKVPIFLTHFTMNSVAARFPYLLKNKLEEGDEGSQVIQLDWTIIEGDIDKPFVSSGLEFVPLPVMHGEDYVCLGFLFGRRSRIAYLSDVSRILPRTEHAISKSGAGQLDLLILETNELHGEGDAGSCHLTLSQTLNAVKRISPKRALLIGMNHEFEHHKENQTLAEWSSREGIPVQLAHDGLRVFIDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44140 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0615500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027810 | RBH | 0.0 | 0.556707 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027550 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027610 | RBH | 0.000000 | 0.701092 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027640 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027390 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0432300 | SBH | 0.2319095 | 0.805307 | 0.1497165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027150 | SBH | 0.0 | 0.000000 | 0.093437 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0434800 | SBH | 5.984015 | 10.9348205 | 12.1434905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027430 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027480 | RBH | 0.000000 | 0.797604 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027530 | SBH | 0.000000 | 1.754211 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027260 | SBH | 0.0 | 0.193247 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027230 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027260 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027250 | RBH | 0.0 | 0.0 | 0.252308 |
