Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0643000 | OGI:03070760 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:24784051-24786767 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGCATACCAAATTACAGGTTAATAAACACGCGGAGGCCGTCATGAGCTAATTGTACAGGTATCCCTTCTCTACGATCACCCAATTTTACAAGTTAGACAGTTCAACCAGACAATAGATGTGTGCATATAAAAATGTTTCAGGAACCATCCGTCTATGCATACCTGCTAGACCATTCTGCCAGCTTCTGATTTTCTTTGTAGTATTCGATCTCATGTGCCATTCCAGTCAGCAAAGCTCTCTTAGGGCTTATCCTCTTCACAGCATCAAGAGCCTGAAAAAAAAATAATGTTGGGAGAAAATGTTGGGTTGGTTGCTCCATCTTGACAGGTATGGATATAATTCTGATAGGGACTAGGCCAATATTGCTTTGTTTGAGCTATCCTGTTCTGTAGGGTGCTTTCATGGAGAGCAGGCAGATTGTATGTCAACAAATTATCTACCTAGTTACTGCAAAAAAAAAAATCAGAAAAATATTTAAAAGGTCTTAACAAATTCAACCTCATTCAGAGGAAGATGGTTACTACGAGCACCTCCCTGTTCACAGAGGGTAAAGTGTATACCAGATTATCGGCAGATATGTGTGAAAGGATATCAAATTATGCTGTTTCAAATGACAATCATGTGGCACAGACCTACCTCCCCATGCAAACTGTTAGCTTCTAGTATAAGAAGATCAAGTTGCCCAGCACCAGACTTTGAAATGGCTGCATGAAAAAATGGCATCCTCTATTCTCCAGTAAAATTGGAACAATCAAATAGGATTCAATACAGCCCAACTACAAAAGAATATCTACAGATTACATGTGATTTTTAGTCATGTTAATGCTAGTTCATCGCCGATGTGATTATAGTTCATCGCCAAAAAAAAATATTGATACAGATATTACTAAATTTGATAAGCTTAAATAACAACAAATCCTTTAAAGATTTAAGATAATTTTGCTGCCGGACATAGTTAAATGTTGCCAATTGCAAAAACATATGAAATCTATTGAGCTGACAAAAATTGAGAAGTTGGTTTAGGAAGAATAGAAACAACCTGCAAATTATCTTGATATTCAGTATTCTGATATATTTTGATGATCACACAAACGACCCTCAAAGATAGTGACATAATATGTTTGATAAAGATCATTTCTTTAAACAAAAACAAGCATTTTACTATTTGAAGAACTATTGATGTCAGAAAAATCATACCATGCTCAGTTTTAGGTAAAAATCTCAAGATGTCGGATAAATATGCAATTCTCGCTTTCCTCCCAAATAGGAAGCCTAAACAAACATAACCCTCTCCATGCATGACCTGAAAAGGGAATAGCACGCTAGCGACTTCAAAGACAACACATAGAGAAACCAAAGCAGTGCATCAATTCACAACAGTGGCTCTCACTGGCAAGGGCACAAACTCTAGCCCCGATGATATAAATGGTTTTTCAATATCACCCTCAATTATTCTCCAATCGAGTTGAGCAACTTGGGAAGCTTCATCACCTTCCTCTAGCTTATATTTCACTAAGTAGGGGAATCTTGCTGCAACGTTGTAAAAAAACAGTAGCTGATGTTATGTGATAATACACGGTAATGATAAAAAATATGATATTATCTCGTTAACATATTTGGGGCGCAAGAATGACCTGTCCATTGTGAATTGTGTGAGGAAAACAGGAACTTGGCCAAAATCATTTCTTCCATCACTTGGTCGAATCATCCAAACATCGTCAAGACCTAGGATAGCATCCGCGTGTTCGTGAGTAAGAATAATCTGCACTGCACAGGGCCTTATTAGTCATGACATCTATAAGGATTGATCATCATCCAAACGCCATCAACATAGTGAATTTATAAATTAGTTATTTGATTTTATATACAATCCATGTAACGGTATATATTGTATAATGCTACCTATAAGATGACAAACAGATGACCACCTTCTCTCCTTTCCCTCTGCTCTAGATCACCCTGGATCCTACATGGCATCCCTCCCAGAGACCGCTTCCTCGAAGTTCAAGTATTTTCCTTGAAAACCTGTGATTCTGTTCCTTCCAAATGCTCAACCAAGTATGGATATGAGACCATTGAAATCTCCATGGTCTTTCTAAGACATTGCACTTGTGGCCTCTTTCCACAATTCAAGGGAAGTTTACCGATTTGTAACCAGCAGTGTTACCAGAAACTGTAGGACTGAAAGAACAGAATTTGGCTATGTGAGCCGACATCTCAGCCATGCTTCTACACAGCTCACAGATTGGAGTGCGGCCAACCACATTTGAGAAGGTTGTTGGCTGTAAGGATTTAGTTATGTGCTAGTATCACAAGAACTGTGATAGAAATTCCACCTTCCCGACACCATTAAATTCGGTCTGATTGCATTGCATCTAGTGCTACTTCCTATAACCACTCACAAAGAGTGACAACTTGTTGCAGTTGGCTCTTGCCAACAAAGCTTTTTTTTACTTAGGCATAAATTCCAAAGGAAAATAGATTGAAACAATGAACAATGCAGTGTTGGAGATCTCACCGAGTTAACCCAAGGGATCTTGTGACAAACAAACCACCGGAGAACCTGCTCTCTAAAGGTCTTGCCAACATCAATTATAATGTACTTATGGGTTCTTGCGTCAAAAAAAATGTACCTATGGGTTCCATCGTTGTCGCAGTAATATATAAATAGGGAGGTGTTACACCTGAAAGCAAACAGAATGTTCAGTTGCTGCAT
More
|
||||||||||
| CDS seq | ATGCAGCAACTGAACATTCTGTTTGCTTTCAGGTGTAACACCTCCCTATTTATATATTACTGCGACAACGATGGAACCCATAGGTACATTTTTTTTGACGCAAGAACCCATAAGTACATTATAATTGATGTTGGCAAGACCTTTAGAGAGCAGGTTCTCCGGTGGTTTGTTTGTCACAAGATCCCTTGGGTTAACTCGATTATTCTTACTCACGAACACGCGGATGCTATCCTAGGTCTTGACGATGTTTGGATGATTCGACCAAGTGATGGAAGAAATGATTTTGGCCAAGTTCCTGTTTTCCTCACACAATTCACAATGGACAGGTCATTCTTGCGCCCCAAATATATTCCCCTACTTAGTGAAATATAA |
||||||||||
| Protein seq | MQQLNILFAFRCNTSLFIYYCDNDGTHRYIFFDARTHKYIIIDVGKTFREQVLRWFVCHKIPWVNSIILTHEHADAILGLDDVWMIRPSDGRNDFGQVPVFLTQFTMDRSFLRPKYIPLLSEI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0643000 | Os03t0643000-00 | Chr03 | 24784051 | 24786767 | - | irgsp1_rep | ||
| CDS seq | ATGCAGCAACTGAACATTCTGTTTGCTTTCAGGTGTAACACCTCCCTATTTATATATTACTGCGACAACGATGGAACCCATAGGTACATTTTTTTTGACGCAAGAACCCATAAGTACATTATAATTGATGTTGGCAAGACCTTTAGAGAGCAGGTTCTCCGGTGGTTTGTTTGTCACAAGATCCCTTGGGTTAACTCGATTATTCTTACTCACGAACACGCGGATGCTATCCTAGGTCTTGACGATGTTTGGATGATTCGACCAAGTGATGGAAGAAATGATTTTGGCCAAGTTCCTGTTTTCCTCACACAATTCACAATGGACAGGTCATTCTTGCGCCCCAAATATATTCCCCTACTTAGTGAAATATAA
More
|
|||||||
| Protein seq | MQQLNILFAFRCNTSLFIYYCDNDGTHRYIFFDARTHKYIIIDVGKTFREQVLRWFVCHKIPWVNSIILTHEHADAILGLDDVWMIRPSDGRNDFGQVPVFLTQFTMDRSFLRPKYIPLLSEI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643000 | RBH | 0.0 | 0.0 | 0.346602 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44100 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0615500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027530 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027600 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027380 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0432300 | RBH | 0.2319095 | 0.805307 | 0.1497165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027150 | SBH | 0.0 | 0.000000 | 0.093437 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0434800 | SBH | 5.984015 | 10.9348205 | 12.1434905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027420 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027530 | RBH | 0.000000 | 1.754211 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027230 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027240 | RBH | 0.000000 | 0.0 | 0.000000 |
