Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0622100 | OGI:03068320 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:23609771-23611883 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATTCCTGATATCCAAATGGGCATGCTGAAAATAGGCAAGAACTGCAGTGTTTGCAAGGAGTGGCAAGAACACTGCTACTGGAGCCATATGGCCGATGACTGTAAGCACTTCTTGACGTATATGGTTGGGGACTTCACCGAGAGCATGGTGAGAAAATCAATCATCTCAGGCTTCCATTTATATGTTCTTTTCTCATGTTCTTTCTCATTTTTTTTCTGTACACAATAAAAGGCGCCTAAGTGCAAATAAATCTCACTCCATAAGATTTCTTTTTCATGTATTCCCATGGTCTATATATTGATATCACTGAATAGATTGACTGACCTGTCATTTCTGCAGATCGTGCCTAGTAGATTTGCCAACAATTTCAACGGGCACATTTCAGAGGTCGTGAATCTGAAGTCACCTAGCGGCAAAACATGGAGCATTGGAGTAGCCTACAGTGACACCGGTGAACTAGTTCTTCGGTCAGGCTGGAAAGAGTTCGTGGATGCTAATGGCGTCCAGGAAAATGACTGCCTGCTCTTCAGGTACAGTGGCGTCTCCTCCTTCGATGTGCTCATCTTTGATCCGTCCGGCTGCGAGAAGGCGTCGCCGCATTTCGTCGAGAACCGTGGATTTGGGAGAGAAGAGAAGTCTGCAGGAGCTGAAGGAGGAGGCAGAGATGGTGACAAGAATGGCCATCACCAACACCAGCTGGAGATGACACCCCACAAGAACAGCAGCAGGTGCAGGAGCATCCCCAGTGCATGTAAGCGCGGATTATTCAGTGATGAGATAGGTATGTATGTCACACAACACAACACTGTGTAATTTATTTTTTCTTTGATAATTGAAATCAATATATCCAGCCCCTGCATCATCGAAATGAAATGGGTATGTCGCACAGCACTCTAATAAATTTATTTTCTTGGATAATGCTCTGTCTGTTTTATATTGTACGACGCTTTGATTTTTTTTTTCAGATCAAACTTACTTGTTGAAGTTCAGCTAAATTTATTAGAAAGTTTAGCAACATCTTCATCACCAAATTAGTTTTATTAAATATATTTTTTCTAAAAACTTGATTTGATCAAAGCGTCTTATAATATGAACGGATAGGGTAGAAATCAATCCAGACTCTGCATCATTGACATGTATGCGGCCATGGGCATTATTGTTGTAACAACTAATATTGGTACATACATGCATGAACGTGCTTGCCTTGCAGAGCAAGATCATCGCGAAGAGAAGAAGGAAGGGGACGATGAAGACGAAGATGAAGATGAAGACGAAGACGTTGACAAAGATGGAGAGGACAGGTACTACTTCTGCAGGCACGGCGGGCGAGTGACCGAGTACAACCTGAGCAAGGGAGACAAGGAGGAGATCTCGCGCGTCCCCGTGCCGGTGGAGCCTGGCAACCCGGTGTTGGTGAAGGTCATCCACGCCAGCCACCTCCTCTCCAGCCGCTACAGCACAGTAGTAAGTGTGAGGCATTTCTCGTCACATTTTTCAGTGAGATTAATTTCATGGCTGAAATATAATGGTGCATTTCTTTTGGTCAGGGCGTGTCGCCGGAGTTCGCCGGCAGGTACCTGGGGCCGGCCATGGCGAGGGAGGTGGTGATGGAGAGGGGAGGAGGAGGAGGAGGAGGGGATCAGTGGCACGTCCGGTTCGTGCGCCGGGAGAGCAGCCGCGGCTTCCACGGCACCGGGTGGCGTCGGTTCGCCCGTGACAATGGCCTCCTCGCCCACGACGTCTGCCTCTTCGAGCTCAGGTTGGTGGACGGCGCCGGCGCCGGCGACCGCCTGCGCCGCCGGCCGAGGCCGACGATGGCCGTGCACGTCCTCCGGCGGGTGCGCGGCCGCTTCGTGCTGATTCGCTGACCAACCATCCATGTGCAGCTCAAACTGGTGAACTGATCTGAGCCCAACCTGGTCGCCTCTCTGCTTGCTAGCTCTTGCTTGCTGCTGGTCCTGGTGACAACTAGTGCATCTGTAATATCTGGTCAGGCTGTGTCTAATTCGTAGTACCAAGTTGTGTTAAATTCGGTGCTACGTTACAATAATTTTAGGATGAAGGAAGTATGCACGTACGTACCTGGTGATGATCAAGCTTTCTGGTCTGATT
More
|
||||||||||
| CDS seq | ATGGGCATGCTGAAAATAGGCAAGAACTGCAGTGTTTGCAAGGAGTGGCAAGAACACTGCTACTGGAGCCATATGGCCGATGACTGTAAGCACTTCTTGACGTATATGGTTGGGGACTTCACCGAGAGCATGATCGTGCCTAGTAGATTTGCCAACAATTTCAACGGGCACATTTCAGAGGTCGTGAATCTGAAGTCACCTAGCGGCAAAACATGGAGCATTGGAGTAGCCTACAGTGACACCGGTGAACTAGTTCTTCGGTCAGGCTGGAAAGAGTTCGTGGATGCTAATGGCGTCCAGGAAAATGACTGCCTGCTCTTCAGGTACAGTGGCGTCTCCTCCTTCGATGTGCTCATCTTTGATCCGTCCGGCTGCGAGAAGGCGTCGCCGCATTTCGTCGAGAACCGTGGATTTGGGAGAGAAGAGAAGTCTGCAGGAGCTGAAGGAGGAGGCAGAGATGGTGACAAGAATGGCCATCACCAACACCAGCTGGAGATGACACCCCACAAGAACAGCAGCAGGTGCAGGAGCATCCCCAGTGCATGTAAGCGCGGATTATTCAGTGATGAGATAGAGCAAGATCATCGCGAAGAGAAGAAGGAAGGGGACGATGAAGACGAAGATGAAGATGAAGACGAAGACGTTGACAAAGATGGAGAGGACAGGTACTACTTCTGCAGGCACGGCGGGCGAGTGACCGAGTACAACCTGAGCAAGGGAGACAAGGAGGAGATCTCGCGCGTCCCCGTGCCGGTGGAGCCTGGCAACCCGGTGTTGGTGAAGGTCATCCACGCCAGCCACCTCCTCTCCAGCCGCTACAGCACAGTAGGCGTGTCGCCGGAGTTCGCCGGCAGGTACCTGGGGCCGGCCATGGCGAGGGAGGTGGTGATGGAGAGGGGAGGAGGAGGAGGAGGAGGGGATCAGTGGCACGTCCGGTTCGTGCGCCGGGAGAGCAGCCGCGGCTTCCACGGCACCGGGTGGCGTCGGTTCGCCCGTGACAATGGCCTCCTCGCCCACGACGTCTGCCTCTTCGAGCTCAGGTTGGTGGACGGCGCCGGCGCCGGCGACCGCCTGCGCCGCCGGCCGAGGCCGACGATGGCCGTGCACGTCCTCCGGCGGGTGCGCGGCCGCTTCGTGCTGATTCGCTGA
More
|
||||||||||
| Protein seq | MGMLKIGKNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFDPSGCEKASPHFVENRGFGREEKSAGAEGGGRDGDKNGHHQHQLEMTPHKNSSRCRSIPSACKRGLFSDEIEQDHREEKKEGDDEDEDEDEDEDVDKDGEDRYYFCRHGGRVTEYNLSKGDKEEISRVPVPVEPGNPVLVKVIHASHLLSSRYSTVGVSPEFAGRYLGPAMAREVVMERGGGGGGGDQWHVRFVRRESSRGFHGTGWRRFARDNGLLAHDVCLFELRLVDGAGAGDRLRRRPRPTMAVHVLRRVRGRFVLIR |
||||||||||
| Function | B3 domain-containing protein Os03g0622100 [UniProtKB/Swiss-Prot:Q10GM4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0622100 | Os03t0622100-01 | Chr03 | 23609771 | 23611883 | + | irgsp1_rep | ||
| CDS seq | ATGGGCATGCTGAAAATAGGCAAGAACTGCAGTGTTTGCAAGGAGTGGCAAGAACACTGCTACTGGAGCCATATGGCCGATGACTGTAAGCACTTCTTGACGTATATGGTTGGGGACTTCACCGAGAGCATGATCGTGCCTAGTAGATTTGCCAACAATTTCAACGGGCACATTTCAGAGGTCGTGAATCTGAAGTCACCTAGCGGCAAAACATGGAGCATTGGAGTAGCCTACAGTGACACCGGTGAACTAGTTCTTCGGTCAGGCTGGAAAGAGTTCGTGGATGCTAATGGCGTCCAGGAAAATGACTGCCTGCTCTTCAGGTACAGTGGCGTCTCCTCCTTCGATGTGCTCATCTTTGATCCGTCCGGCTGCGAGAAGGCGTCGCCGCATTTCGTCGAGAACCGTGGATTTGGGAGAGAAGAGAAGTCTGCAGGAGCTGAAGGAGGAGGCAGAGATGGTGACAAGAATGGCCATCACCAACACCAGCTGGAGATGACACCCCACAAGAACAGCAGCAGGTGCAGGAGCATCCCCAGTGCATGTAAGCGCGGATTATTCAGTGATGAGATAGAGCAAGATCATCGCGAAGAGAAGAAGGAAGGGGACGATGAAGACGAAGATGAAGATGAAGACGAAGACGTTGACAAAGATGGAGAGGACAGGTACTACTTCTGCAGGCACGGCGGGCGAGTGACCGAGTACAACCTGAGCAAGGGAGACAAGGAGGAGATCTCGCGCGTCCCCGTGCCGGTGGAGCCTGGCAACCCGGTGTTGGTGAAGGTCATCCACGCCAGCCACCTCCTCTCCAGCCGCTACAGCACAGTAGGCGTGTCGCCGGAGTTCGCCGGCAGGTACCTGGGGCCGGCCATGGCGAGGGAGGTGGTGATGGAGAGGGGAGGAGGAGGAGGAGGAGGGGATCAGTGGCACGTCCGGTTCGTGCGCCGGGAGAGCAGCCGCGGCTTCCACGGCACCGGGTGGCGTCGGTTCGCCCGTGACAATGGCCTCCTCGCCCACGACGTCTGCCTCTTCGAGCTCAGGTTGGTGGACGGCGCCGGCGCCGGCGACCGCCTGCGCCGCCGGCCGAGGCCGACGATGGCCGTGCACGTCCTCCGGCGGGTGCGCGGCCGCTTCGTGCTGATTCGCTGA
More
|
|||||||
| Protein seq | MGMLKIGKNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFDPSGCEKASPHFVENRGFGREEKSAGAEGGGRDGDKNGHHQHQLEMTPHKNSSRCRSIPSACKRGLFSDEIEQDHREEKKEGDDEDEDEDEDEDVDKDGEDRYYFCRHGGRVTEYNLSKGDKEEISRVPVPVEPGNPVLVKVIHASHLLSSRYSTVGVSPEFAGRYLGPAMAREVVMERGGGGGGGDQWHVRFVRRESSRGFHGTGWRRFARDNGLLAHDVCLFELRLVDGAGAGDRLRRRPRPTMAVHVLRRVRGRFVLIR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0622100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42420 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0622200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026700 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026430 | SBH | 0.0 | 0.299294 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026490 | SBH | 0.000000 | 0.0 | 0.164040 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026510 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026310 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0416900 | RBH | 0.1102895 | 0.203004 | 0.5228245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026090 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0420400 | SBH | 0.0709305 | 0.2020035 | 0.2348565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026350 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026370 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026470 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026220 | SBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026140 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026170 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026120 | SBH | 0.0 | 0.0 | 0.000000 |
