Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0619850 | OGI:03067890 | 9/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:23508909-23510727 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGGAGGTGGTTCTCGTATGAAGAAGTCTTGTGCTTGTTGCAAGAGATACCTGGAACATTTGGGTGGAAAAATGAGTTGCTTCCTCATTAGAATGACTACTGATTCTATGCATAGCATGGTAAGATCCTCACAGATTCAGTGTCTTTTTCTCCTAGATGTATATCTCATCTGGTAATACGTCCATGAATATTACTGAGATATCCATAAAGAACGATTGGTTGGATTGAGCTCCTATTGAGAAGTTTTCATCTGATCCTAAATATATCATGGTTGTTCACATAGGATGGTTTGAACTCAATACTAATATATTAATGTTTGGTATACTTGATTTGAGCTGTTAAAGTTATTGCAAACCTCAAGTAATAAAATGCTAACCCTTTTCTTACCAATAAGGGGAAGTATGTGAATAGAACAGGACAGAAGGCACGGATAGATTTTTGCACAAGCATTTTGATAACATAATTGTACCTATCTTTATCTAACAAATTAGACTAGTATTGATGGTTAAAATAAATATCCTAGATGGCAAGGGTGATTCTTTAAAATATAATTTATACCCCTCTTAATTAAAAGATGTACTGGTTGTGTAAGCGTTTCCTTCCTGAAATTCATACCTTTTACACTATATCGTGTTTAATGTTGCCCTTGTTGTTTGGAGAAGTCTATATCAATGCTTTTCAATATTATTGCTACAGATAATTCCAGATAGGTTTGTGAACCATTTTGGAGGAAAGATCCCAGGAACCATAAAATTGGAATCTCCTAATGGTATTCTGTATGTTGTTGAAGTCACTGAGTGCATGAATAAGACGGTCCTACAATGTGGTTGGGAGGCATTTGTTGATGCCCATCACATAAAAGTGGGTGACTCTTTGTTGTTCCGACACATTGAGAATTCCTGTTTTGAGGTTATGATCCTAGATTCTGATGGCTGTGAGAGAGTATTCTCCTGTGCTGGCATAAAAACCAGTTCTTGTGTTCATGACAAAACTGTAGATCCTGTTGATACTTCAGGCAGATCTAGTGATGATACCGCGCAACCATCACGGAGTGAAAGATTTGCTAGATGTCAAAGGGATACGTCCAATGATCGTAGAAACACTCTGCAAGCTTGACAGCAGTGTCCTCATCATCTGAGGAATCAGGTAAATGATTTGCAGATATGCCTCAAATTTTAGACTGGTATACCTTTAGTTTCTTGTGAAACTGTTTACAAAAGAAATCGAACCTCAATTTTTATTGTACAGTTATGTAATCATGTAAATTTGTTGTAGCAGAAAATGTTTCCCTGAAAAGCAACAGGAATGGAGTTTCTGATGAATCTCAGGAGAGTGAGGATTCTGAAGGCCCTGCTGGCCCTCCCTACATTCTATCATGGAAGAGCAAGAGTCGTCTATCTTCATTGCAAAAGAAGATAATCAAAGAGAAAGTACGATCCATCCAATCCGAAGTTCCCATTTATGTAGCAATCATGAACAAGAGCAATATTGGGTTAACTAGTTCCCCTTGCCAGCTAGTAAGCTCTTTCCCTCTCTGAATTTTTCAACTATTTGGCTTGAAATTTAGTTTCTAGTAGTTACATAGTACATCGGATAATTGGCACACTTATCATTGTAACTAAGCTTGTAACACCCATGGTTTTTCCATGTGAAAAACAGGAATTAGGTGCAAGATATGCAGCTGCTGTGCATCTTCCAGACAGGAGGCAAGCCGTGGTGCTCCAGCGGGGGGCAGCGATGGGACACCGTGATGCAGACCAAGAGCGGCAGATGCACCACCAGGCGGTTCCTGATCAATGGCTGGAGCAGGTTCGT
More
|
||||||||||
| CDS seq | ATGGCTGGAGGTGGTTCTCGTATGAAGAAGTCTTGTGCTTGTTGCAAGAGATACCTGGAACATTTGGGTGGAAAAATGAGTTGCTTCCTCATTAGAATGACTACTGATTCTATGCATAGCATGATAATTCCAGATAGGTTTGTGAACCATTTTGGAGGAAAGATCCCAGGAACCATAAAATTGGAATCTCCTAATGGTATTCTGTATGTTGTTGAAGTCACTGAGTGCATGAATAAGACGGTCCTACAATGTGGTTGGGAGGCATTTGTTGATGCCCATCACATAAAAGTGGGTGACTCTTTGTTGTTCCGACACATTGAGAATTCCTGTTTTGAGGTTATGATCCTAGATTCTGATGGCTCAGAAAATGTTTCCCTGAAAAGCAACAGGAATGGAGTTTCTGATGAATCTCAGGAGAGTGAGGATTCTGAAGGCCCTGCTGGCCCTCCCTACATTCTATCATGGAAGAGCAAGAGTCGTCTATCTTCATTGCAAAAGAAGATAATCAAAGAGAAAGTACGATCCATCCAATCCGAAGTTCCCATTTATGTAGCAATCATGAACAAGAGCAATATTGGGTTAACTAGTTCCCCTTGCCAGCTAGAATTAGGTGCAAGATATGCAGCTGCTGTGCATCTTCCAGACAGGAGGCAAGCCGTGGTGCTCCAGCGGGGGGCAGCGATGGGACACCGTGATGCAGACCAAGAGCGGCAGATGCACCACCAGGCGGTTCCTGATCAATGGCTGGAGCAGGTTCGT
More
|
||||||||||
| Protein seq | MAGGGSRMKKSCACCKRYLEHLGGKMSCFLIRMTTDSMHSMIIPDRFVNHFGGKIPGTIKLESPNGILYVVEVTECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENSCFEVMILDSDGSENVSLKSNRNGVSDESQESEDSEGPAGPPYILSWKSKSRLSSLQKKIIKEKVRSIQSEVPIYVAIMNKSNIGLTSSPCQLELGARYAAAVHLPDRRQAVVLQRGAAMGHRDADQERQMHHQAVPDQWLEQVR |
||||||||||
| Function | Putative B3 domain-containing protein Os03g0619850 [UniProtKB/Swiss-Prot:Q10GP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0619850 | Os03t0619850-00 | Chr03 | 23508909 | 23510727 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGGAGGTGGTTCTCGTATGAAGAAGTCTTGTGCTTGTTGCAAGAGATACCTGGAACATTTGGGTGGAAAAATGAGTTGCTTCCTCATTAGAATGACTACTGATTCTATGCATAGCATGATAATTCCAGATAGGTTTGTGAACCATTTTGGAGGAAAGATCCCAGGAACCATAAAATTGGAATCTCCTAATGGTATTCTGTATGTTGTTGAAGTCACTGAGTGCATGAATAAGACGGTCCTACAATGTGGTTGGGAGGCATTTGTTGATGCCCATCACATAAAAGTGGGTGACTCTTTGTTGTTCCGACACATTGAGAATTCCTGTTTTGAGGTTATGATCCTAGATTCTGATGGCTCAGAAAATGTTTCCCTGAAAAGCAACAGGAATGGAGTTTCTGATGAATCTCAGGAGAGTGAGGATTCTGAAGGCCCTGCTGGCCCTCCCTACATTCTATCATGGAAGAGCAAGAGTCGTCTATCTTCATTGCAAAAGAAGATAATCAAAGAGAAAGTACGATCCATCCAATCCGAAGTTCCCATTTATGTAGCAATCATGAACAAGAGCAATATTGGGTTAACTAGTTCCCCTTGCCAGCTAGAATTAGGTGCAAGATATGCAGCTGCTGTGCATCTTCCAGACAGGAGGCAAGCCGTGGTGCTCCAGCGGGGGGCAGCGATGGGACACCGTGATGCAGACCAAGAGCGGCAGATGCACCACCAGGCGGTTCCTGATCAATGGCTGGAGCAGGTTCGT
More
|
|||||||
| Protein seq | MAGGGSRMKKSCACCKRYLEHLGGKMSCFLIRMTTDSMHSMIIPDRFVNHFGGKIPGTIKLESPNGILYVVEVTECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENSCFEVMILDSDGSENVSLKSNRNGVSDESQESEDSEGPAGPPYILSWKSKSRLSSLQKKIIKEKVRSIQSEVPIYVAIMNKSNIGLTSSPCQLELGARYAAAVHLPDRRQAVVLQRGAAMGHRDADQERQMHHQAVPDQWLEQVR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0619850 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42230 | SBH | 0.808113 | 0.465356 | 0.168232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0620500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026620 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026350 | SBH | 0.0 | 0.0 | 0.573906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026410 | SBH | 0.0 | 0.0 | 0.356735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026440 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026220 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0414000 | SBH | 0.036229 | 0.050142 | 0.030758 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0418700 | SBH | 0.07452 | 0.174806 | 0.767733 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026090 | SBH | 0.0 | 0.0 | 0.187105 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026040 | SBH | 0.0 | 0.0 | 0.408917 |
