Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0400901 | OGI:03043860 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:16259903-16261152 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAATATCAATTTGACAACACTAACTCATTGACAAGCTTGATCTCACTTGCCTGGGTGCTGCGGCTGCTGCGAACGCAGGTGACAACAGCTTGCCACCCATCTGCATCCAAGCTCATCTCCCTCCTCGCCATCTGCTCCAAGACGAAGCACGCCTCCTCCACCTTGCCGTCCTCGCCGAGCCCTCTCACAAGGTGCGAGGTTGAGGACAGTGTCCGCTCGCCAACATCGCGTTGAAAACCCGTAGACCCAGCTCGAAGTCGCGAGCCCTGCAGCACCCGTCGACGAGGACGCGGTACGTTGGCGGCGCCCGGCACGGTGCCCTTGAGCTGCATGTCAAGCAGCGCCCTGTGCGCCTCGTCGACCCTGCCGACGTCGCACGGGCACTTGATCAGGACGTTGTAGCTCGCGTCGTCGGGCTTGAGCTTCCGCTTGCGCATGGCGGAGAGGAGCTCCCTGACGCCGTTGACGTCGCCGCGCCTCGCGCGGGAGCTCGTCAGCACGCCGTAGTTCACCACCTCGGCCTGGTAGCCACGGTACTCCATGTCAAACATCAGCTTCTCGGCGTCGGCGTGGAGGTCGGCGTCGCAGAGCCCCTGCATCAGCAGGGAGTAGGTGGCCGCATTTGGCGCCACGCCCCGGCGCACCATCTCGTCGATGAGCCGCTCCGCCGCGCCCAGCTCACCCTCACGGACGCCGAGCTTCGGGGCGAGCTGGAGCATGTCCCTGGCGGCATCCGCGCGGCCATTGGAGACAAGGGCGTTGAGGAGCGAATGGAATGTGGCGGCGGAGTGGGAGCAGAAGGCCGGGACGGCGCGGAAGACGAGGACCGCGGCGTCGGGGCGGGAGGCGGCGGCGAGCACGGAGGGACGGAGCGGCGCGCCGCGGGAGTGCAGCGTGGCGAGGAGCGGGGGCACGAGCGGGAAGAGGCGCGCGCGGGCGAGGCGGTAGAGCACGCAGGCGGCGAAGGGGTGGTCGTGGAGGCGCGTCGGCGCGGAGAGGAGCGCGGCCGCAGCGGCGACGGGGGACGGGAGCGACTTGAGGTGGAGGAGGAATGGGCGCGGCGGCAGCGGAGGGCTCGGTAGGGCGAGGTGTGGAGCTCCTGTACCTTGCTCCTCCCGCCTACCCCCCCCCCCCCCCTCCTCCCAAGTCCCGAGTCCAGGACGCCGCACCGGCGATAGAGACGACGGCGCCGCGCGTCGATAGCGAATGCCGCGTGCGAGAGGATCAGAGGAGCGAACGAGGCCAACTAA
More
|
||||||||||
| CDS seq | TTAGTTGGCCTCGTTCGCTCCTCTGATCCTCTCGCACGCGGCATTCGCTATCGACGCGCGGCGCCGTCGTCTCTATCGCCGGTGCGGCGTCCTGGACTCGGGACTTGGGAGGAGGGGGGGGGGGGGGGTAGGCGGGAGGAGCAAGGTACAGGAGCTCCACACCTCGCCCTACCGAGCCCTCCGCTGCCGCCGCGCCCATTCCTCCTCCACCTCAAGTCGCTCCCGTCCCCCGTCGCCGCTGCGGCCGCGCTCCTCTCCGCGCCGACGCGCCTCCACGACCACCCCTTCGCCGCCTGCGTGCTCTACCGCCTCGCCCGCGCGCGCCTCTTCCCGCTCGTGCCCCCGCTCCTCGCCACGCTGCACTCCCGCGGCGCGCCGCTCCGTCCCTCCGTGCTCGCCGCCGCCTCCCGCCCCGACGCCGCGGTCCTCGTCTTCCGCGCCGTCCCGGCCTTCTGCTCCCACTCCGCCGCCACATTCCATTCGCTCCTCAACGCCCTTGTCTCCAATGGCCGCGCGGATGCCGCCAGGGACATGCTCCAGCTCGCCCCGAAGCTCGGCGTCCGTGAGGGTGAGCTGGGCGCGGCGGAGCGGCTCATCGACGAGATGGTGCGCCGGGGCGTGGCGCCAAATGCGGCCACCTACTCCCTGCTGATGCAGGGGCTCTGCGACGCCGACCTCCACGCCGACGCCGAGAAGCTGATGTTTGACATGGAGTACCGTGGCTACCAGGCCGAGGTGGTGAACTACGGCGTGCTGACGAGCTCCCGCGCGAGGCGCGGCGACGTCAACGGCGTCAGGGAGCTCCTCTCCGCCATGCGCAAGCGGAAGCTCAAGCCCGACGACGCGAGCTACAACGTCCTGATCAAGTGCCCGTGCGACGTCGGCAGGGTCGACGAGGCGCACAGGGCGCTGCTTGACATGCAGCTCAAGGGCACCGTGCCGGGCGCCGCCAACGTACCGCGTCCTCGTCGACGGGTGCTGCAGGGCTCGCGACTTCGAGCTGGGTCTACGGGTTTTCAACGCGATGTTGGCGAGCGGACACTGTCCTCAACCTCGCACCTTGTGAGAGGGCTCGGCGAGGACGGCAAGGTGGAGGAGGCGTGCTTCGTCTTGGAGCAGATGGCGAGGAGGGAGATGAGCTTGGATGCAGATGGGTGGCAAGCTGTTGTCACCTGCGTTCGCAGCAGCCGCAGCACCCAGGCAAGTGAGATCAAGCTTGTCAATGAGTTAGTGTTGTCAAATTGA
More
|
||||||||||
| Protein seq | LVGLVRSSDPLARGIRYRRAAPSSLSPVRRPGLGTWEEGGGGGRREEQGTGAPHLALPSPPLPPRPFLLHLKSLPSPVAAAAALLSAPTRLHDHPFAACVLYRLARARLFPLVPPLLATLHSRGAPLRPSVLAAASRPDAAVLVFRAVPAFCSHSAATFHSLLNALVSNGRADAARDMLQLAPKLGVREGELGAAERLIDEMVRRGVAPNAATYSLLMQGLCDADLHADAEKLMFDMEYRGYQAEVVNYGVLTSSRARRGDVNGVRELLSAMRKRKLKPDDASYNVLIKCPCDVGRVDEAHRALLDMQLKGTVPGAANVPRPRRRVLQGSRLRAGSTGFQRDVGERTLSSTSHLVRGLGEDGKVEEACFVLEQMARREMSLDADGWQAVVTCVRSSRSTQASEIKLVNELVLSN |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At1g07740, mitochondrial [UniProtKB/Swiss-Prot:Q9LQQ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0400901 | Os03t0400901-00 | Chr03 | 16259903 | 16261152 | - | irgsp1_rep | ||
| CDS seq | TTAGTTGGCCTCGTTCGCTCCTCTGATCCTCTCGCACGCGGCATTCGCTATCGACGCGCGGCGCCGTCGTCTCTATCGCCGGTGCGGCGTCCTGGACTCGGGACTTGGGAGGAGGGGGGGGGGGGGGGTAGGCGGGAGGAGCAAGGTACAGGAGCTCCACACCTCGCCCTACCGAGCCCTCCGCTGCCGCCGCGCCCATTCCTCCTCCACCTCAAGTCGCTCCCGTCCCCCGTCGCCGCTGCGGCCGCGCTCCTCTCCGCGCCGACGCGCCTCCACGACCACCCCTTCGCCGCCTGCGTGCTCTACCGCCTCGCCCGCGCGCGCCTCTTCCCGCTCGTGCCCCCGCTCCTCGCCACGCTGCACTCCCGCGGCGCGCCGCTCCGTCCCTCCGTGCTCGCCGCCGCCTCCCGCCCCGACGCCGCGGTCCTCGTCTTCCGCGCCGTCCCGGCCTTCTGCTCCCACTCCGCCGCCACATTCCATTCGCTCCTCAACGCCCTTGTCTCCAATGGCCGCGCGGATGCCGCCAGGGACATGCTCCAGCTCGCCCCGAAGCTCGGCGTCCGTGAGGGTGAGCTGGGCGCGGCGGAGCGGCTCATCGACGAGATGGTGCGCCGGGGCGTGGCGCCAAATGCGGCCACCTACTCCCTGCTGATGCAGGGGCTCTGCGACGCCGACCTCCACGCCGACGCCGAGAAGCTGATGTTTGACATGGAGTACCGTGGCTACCAGGCCGAGGTGGTGAACTACGGCGTGCTGACGAGCTCCCGCGCGAGGCGCGGCGACGTCAACGGCGTCAGGGAGCTCCTCTCCGCCATGCGCAAGCGGAAGCTCAAGCCCGACGACGCGAGCTACAACGTCCTGATCAAGTGCCCGTGCGACGTCGGCAGGGTCGACGAGGCGCACAGGGCGCTGCTTGACATGCAGCTCAAGGGCACCGTGCCGGGCGCCGCCAACGTACCGCGTCCTCGTCGACGGGTGCTGCAGGGCTCGCGACTTCGAGCTGGGTCTACGGGTTTTCAACGCGATGTTGGCGAGCGGACACTGTCCTCAACCTCGCACCTTGTGAGAGGGCTCGGCGAGGACGGCAAGGTGGAGGAGGCGTGCTTCGTCTTGGAGCAGATGGCGAGGAGGGAGATGAGCTTGGATGCAGATGGGTGGCAAGCTGTTGTCACCTGCGTTCGCAGCAGCCGCAGCACCCAGGCAAGTGAGATCAAGCTTGTCAATGAGTTAGTGTTGTCAAATTGA
More
|
|||||||
| Protein seq | LVGLVRSSDPLARGIRYRRAAPSSLSPVRRPGLGTWEEGGGGGRREEQGTGAPHLALPSPPLPPRPFLLHLKSLPSPVAAAAALLSAPTRLHDHPFAACVLYRLARARLFPLVPPLLATLHSRGAPLRPSVLAAASRPDAAVLVFRAVPAFCSHSAATFHSLLNALVSNGRADAARDMLQLAPKLGVREGELGAAERLIDEMVRRGVAPNAATYSLLMQGLCDADLHADAEKLMFDMEYRGYQAEVVNYGVLTSSRARRGDVNGVRELLSAMRKRKLKPDDASYNVLIKCPCDVGRVDEAHRALLDMQLKGTVPGAANVPRPRRRVLQGSRLRAGSTGFQRDVGERTLSSTSHLVRGLGEDGKVEEACFVLEQMARREMSLDADGWQAVVTCVRSSRSTQASEIKLVNELVLSN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0400901 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28270 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0621100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021050 | RBH | 0.171690 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020900 | SBH | 0.119150 | 0.035115 | 0.072934 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020950 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020950 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020790 | SBH | 1.452051 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0269000 | RBH | 0.433808 | 0.735119 | 0.14582 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020530 | SBH | 0.169115 | 0.000000 | 0.028972 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0271000 | SBH | 0.295042 | 0.2473005 | 0.5116215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020770 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020760 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020750 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020630 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020570 | SBH | 0.113447 | 0.214526 | 0.171174 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020460 | RBH | 0.0 | 0.0 | 0.0 |
