Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0336200 | OGI:03033160 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:12452080-12456329 | ||||||||
| Gene Symbol | RF2B, RF2b, OsbZIP30 | ||||||||||
| DNA seq | AACGCCATCCCAGCGCAGCGCAGGCACGCACGGCACCGGCGGCGGAGGACGCGGCAGGAGCAGCAGCCGCCTCCTCCAATCCCCGAGCCGAACACTCGCTGGCGGGCGCGCGCGCGCGCAGCCGGGGAACCGGGGGGGAGACAGGGTGGTGGTGGTGAGGCGGGGGCGAGCGCAATGCAGGAGCCAAAGCACACCGATCCGGCGGCCATGCGCGGGGCGCACCACCGCCGGGCCAGATCTGAGGTCGCCTTCCGCCTGCCCGACGACCTCGACCTCGGCGGCGGCGGCGCGGGGGCGTTCGACGAGATCGGCTCCGAGGACGACCTCTTCTCCACCTTCATGGACATCGAGAAGATCTCCTCCGGCCCCGCCGCCGCGGGGGGCTCCGACCGGGACCGCGCCGCGGAGACGTCCTCGCCGCCGCGCCCCAAGCACCGCCACAGCAGCTCCGTCGACGGCTCCGGGTTCTTCGCCGCCGCGCGGAAGGACGCCGCCGCATCGCTGGCGGAGGTCATGGAGGCTAAGAAGGCCATGACCCCCGAGCAGCTCTCCGAGCTCGCCGCCATCGACCCCAAGCGCGCCAAAAGGTGCAAAGCCTCCCCGATCTCCCGCTCTCCATCCATCCGCTTGCTCTCGCGAATCCGACGTTGTCGTTGATGCTTAGATTAGAAAGGTGCCCGTCACACGCCATAGATTAACAGATTACCTGTTTCGTTTCTCCAAGGTAGCAGGGAATCATACCAGACGAGGTACCTAGGACAATTATGCATGCATGCATCTTTCTGAAAAATGCCTGGAGGTTAGAGAAAAAGATGTGCATTTGCGTCTTGTTTGTTTCTTTGCGTACTGTGTGGATTATTGGATAGATGGCGCTTGGTGGTTGGTTGGCAGATCAGGAGTTAAGGTTATAAGTGCTAGTTATCGAGCACTCGGTTGGTGGGATTGTTATGGATAAGTGTTTGCTGCTGTGAGGTGGCGGCTTGGCGCATGCTTTTGTTGGCTTTTTTTTGCTGGGATTGTGAAAGGGGGTGGGTCAATAGAGTAGGTGTAATCGTTAGTTACTTTTTAGTTGTGCATATGCGCTGGTTTTAATTCGATATTAGTTACTGTCTAAGATGCTAGATACTGTTTGGATGTCTGATTAGATTGTTTTTTGTTTCTCTTTGCTTAGCTCTGGTACCTAAGAAATGTGATGAACAAATGTTGCATCTCTAGTTAAACTATGAAAATGTAGCACAATGATATGCGATTAGTGACATGTTATTAAACCGGATTGTCTGGATTGATTGTGAAAGGCAGTGGGACTGTGGGAGCAACAACCAAAGGATAGACATCCAATCGAATAAGAGAAAGCAACAGTCTCAGTTTTGGAATTATTCTTTGAGGTCGTGTGTAGGCGTGTAGCCAATCAAATTAGAGAAAATACCATCACCTTCTGGAGTAGCTATTTAGGGGCTGCAAATACTTAATAGTCAAAATTTTCTATATCTTAAAGCAATCAACCAATATAAAACTGTGAGGGCAGTACTTCATTTCTTCAACACATTGAAGATGTGCATTGATGCCTTCTGCAATGTAGGTCTGTCAACTTAGATGTTCTAATTATCAGCATGGTTGTGATCTCACCAGTACTAAACCATGGTATACTTTCCACCTCAATAAACTATTGCTATTCAGTTTAACCAGATAGTATATCTAAACTTATTTTTTTACAGTTAACGTCTGATGCGTTAAAATTGCATTGCCTCCCTTTGTTTTCTCCCTAATTGTATGCAGTAAACAGTTTGTGTGAAACATCAACCAAAAAAGATCGCTTTACACATGCCAGTTGGTTGACTTGTCTGTAATTCTGCACATGCTTCCGATTTTGTTTTGTTTTCTAAACAATATACAAATGCTTCCCCAGTTCATCTTTAATTTAATAAGGTTATCCGGGCAATGAATATTTCTTCTTTTCTGTTCTGATATATACAAAAATACTGAACATACCATTATTTAACAAAATTTGACTACACTTGTGTTTGATGTTGATAAATAACACTCCTATTTCTTTCTTGAAATCTATGGTGGGATTTATCCCTAATTCATGATTTCTTTTAAATTTGTAAATATTGTTTGTAATGTGGAAAGTGGATTGAAGATGAACACCCTCAATCGCTGGCAAATTATCATTATGTTCCTGAAATATTTTTAAACCAGGCAATTTGTAATATTTTGTTAACCTCTTGAGTTTGTTCTCTTACAGAATTCTGGCGAACAGACAATCTGCAGCTCGGTCAAAAGAGAGAAAAGCTCGTTACATAACAGAACTTGAGCGGAAGGTTCAAACTCTTCAGACTGAAGCCACTACTCTCTCAGCACAACTCACACTATTTCAGGTGCCTTTCCATCTATCTTTTGCCTCATGGTTTAAATCATGAGTTTCTGGAAACAGTAATCCTGTACTAGTGAAACACTGTTTTTCCTTGGCAATCTTAGTAAACAAACTGGCTGTCGGCTGTTCCTCCATCCCCAATAGTTACCACTTACCACACAGCAAACAAACTGTAGCTTCTTTGCTAGATGCAAGAATCCCATACAAGACGAGAACCAAGTTGCGGCTTCCTTGTGGATTGCATCTAGCTTGATAGTTTTTCATGTACCATTGGACAACTTGTATGTTGTATGCATGACTTCTGCACATGCTATGATCATTATAAATATCCATTGGATTATTTTATATGGCTATGTGAACACCTTGAAGAGCTGAATGCTGATGGAGTGCATGTGAGAATAAAGAATAAATCTATTCGTTGACTTTTGACTATCTTGTTATAGGTTATGCTATTTTGTTGTGCTGTTGACTTCTGAAAGAGCATAAAACCTTTCAATTTATGGCTGTGCTAAACTACTGGCTCTTAAAACATTTCTTTTACTTTCAGAGAGACACAACTGGGCTTTCTGCAGAAAATGCAGAGCTCAAGATACGGTTGCAGGCCATGGAACAACAGGCTCAACTGCGAGATGGTGAGCATTTTCCTTAACTGGATAACTATAGTTACTTAACATTTGTTGTTTTTCATCAACAATAACTAGTGGTAAAAGTATAAAACTGATCATTATATTGGAAATGATAGCATCAAAGTTCATTTATCCTTTCCTGATAGACACACCCTTTTCATTTTACAATTCAGTCTAGAGCTATCCTAGCTATATACGTTCTATTTGTGACATCTTAAATTTTGTGCCAAAAGCTAGAATGATTTTTAATACGGAGACCCGTGTAATTATATTGGATATGTAGAAGTGATAGCTGGAGTATGAATTGCAACTGTGAGCGTACCTTTCTGGTTCTAACAAAAAGTGTGATATAATTTTTCAGCTCTGAATGATGCACTAAAGCAGGAACTGGAGAGGCTTAAGCTCGCTACTGGTGAGATGACAAATTCCAATGAGACATATAGCATGGGACTGCAACATGTCCCATACAACACCCCTTTCTTCCCTCTCGCCCAGCATAATGCAGCCCGCCAGAACGGTGGAACCCAGTTGCCACCACAATTCCAACCACCCCGTCCTAATGTGCCCAATCACATGCTATCCCATCCAAACGGTTTGCAAGATATCATGCAGCAAGACCCTCTTGGCCGGCTTCAGGGTTTGGACATCAGCAAAGGGCCTCTAGTTGTGAAATCAGAGAGCAGCTCGATCTCTGCAAGTGAAAGCAGCAGCACCTTCTAACCAGGCCTACCCACCGAGCCCACAGTTCCATTAGATTCGTTTGTTCATAGCCTGACATCCTCGCGCTGCTCCCTGTTCTGTAAGCTTATTATTTATTCAATTCGTTCGATTTAGTTGAAATTGTTCGTAATTGCAGTGGCTGATCTATTCCCTTCTGTGGACATGATTCCTGTACCCCTCACATCCATTTGTTTTGGGTTCATCTCCTGTGTGCTGTGTTTGGGATTATCAGGGCACCAGGACTGGCTTTCTCCGAGAATACTGTGTTCTTTGTGGTCGTGTGGACTTGTTCACCATGGATTCAATTCAACCTTTTGAAAAGATGCATGTATTCTCTGATTTTTTTTTCTCAGTCATGTACATGTCACTGTTATGCTAGTTTGATTGATGTGTACTGTGGAATTTGTGGATAACAAAAGGAGTTAAGATTGGGATTGCTGTGGAACCATCTGTATCGTATATTCGTATGTGACTAATGTTGGGAAATTGTTCTATTCTTGTTCACCATATGCATGTGGGGTAACTTTTCC
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| CDS seq | ATGCAGGAGCCAAAGCACACCGATCCGGCGGCCATGCGCGGGGCGCACCACCGCCGGGCCAGATCTGAGGTCGCCTTCCGCCTGCCCGACGACCTCGACCTCGGCGGCGGCGGCGCGGGGGCGTTCGACGAGATCGGCTCCGAGGACGACCTCTTCTCCACCTTCATGGACATCGAGAAGATCTCCTCCGGCCCCGCCGCCGCGGGGGGCTCCGACCGGGACCGCGCCGCGGAGACGTCCTCGCCGCCGCGCCCCAAGCACCGCCACAGCAGCTCCGTCGACGGCTCCGGGTTCTTCGCCGCCGCGCGGAAGGACGCCGCCGCATCGCTGGCGGAGGTCATGGAGGCTAAGAAGGCCATGACCCCCGAGCAGCTCTCCGAGCTCGCCGCCATCGACCCCAAGCGCGCCAAAAGAATTCTGGCGAACAGACAATCTGCAGCTCGGTCAAAAGAGAGAAAAGCTCGTTACATAACAGAACTTGAGCGGAAGGTTCAAACTCTTCAGACTGAAGCCACTACTCTCTCAGCACAACTCACACTATTTCAGAGAGACACAACTGGGCTTTCTGCAGAAAATGCAGAGCTCAAGATACGGTTGCAGGCCATGGAACAACAGGCTCAACTGCGAGATGCTCTGAATGATGCACTAAAGCAGGAACTGGAGAGGCTTAAGCTCGCTACTGGTGAGATGACAAATTCCAATGAGACATATAGCATGGGACTGCAACATGTCCCATACAACACCCCTTTCTTCCCTCTCGCCCAGCATAATGCAGCCCGCCAGAACGGTGGAACCCAGTTGCCACCACAATTCCAACCACCCCGTCCTAATGTGCCCAATCACATGCTATCCCATCCAAACGGTTTGCAAGATATCATGCAGCAAGACCCTCTTGGCCGGCTTCAGGGTTTGGACATCAGCAAAGGGCCTCTAGTTGTGAAATCAGAGAGCAGCTCGATCTCTGCAAGTGAAAGCAGCAGCACCTTCTAA
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| Protein seq | MQEPKHTDPAAMRGAHHRRARSEVAFRLPDDLDLGGGGAGAFDEIGSEDDLFSTFMDIEKISSGPAAAGGSDRDRAAETSSPPRPKHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMGLQHVPYNTPFFPLAQHNAARQNGGTQLPPQFQPPRPNVPNHMLSHPNGLQDIMQQDPLGRLQGLDISKGPLVVKSESSSISASESSSTF |
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| Function | Transcription factor RF2b [UniProtKB/Swiss-Prot:Q6S4P4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0336200 | Os03t0336200-01 | Chr03 | 12452080 | 12456210 | + | irgsp1_rep | ||
| CDS seq | ATGCAGGAGCCAAAGCACACCGATCCGGCGGCCATGCGCGGGGCGCACCACCGCCGGGCCAGATCTGAGGTCGCCTTCCGCCTGCCCGACGACCTCGACCTCGGCGGCGGCGGCGCGGGGGCGTTCGACGAGATCGGCTCCGAGGACGACCTCTTCTCCACCTTCATGGACATCGAGAAGATCTCCTCCGGCCCCGCCGCCGCGGGGGGCTCCGACCGGGACCGCGCCGCGGAGACGTCCTCGCCGCCGCGCCCCAAGCACCGCCACAGCAGCTCCGTCGACGGCTCCGGGTTCTTCGCCGCCGCGCGGAAGGACGCCGCCGCATCGCTGGCGGAGGTCATGGAGGCTAAGAAGGCCATGACCCCCGAGCAGCTCTCCGAGCTCGCCGCCATCGACCCCAAGCGCGCCAAAAGAATTCTGGCGAACAGACAATCTGCAGCTCGGTCAAAAGAGAGAAAAGCTCGTTACATAACAGAACTTGAGCGGAAGGTTCAAACTCTTCAGACTGAAGCCACTACTCTCTCAGCACAACTCACACTATTTCAGAGAGACACAACTGGGCTTTCTGCAGAAAATGCAGAGCTCAAGATACGGTTGCAGGCCATGGAACAACAGGCTCAACTGCGAGATGCTCTGAATGATGCACTAAAGCAGGAACTGGAGAGGCTTAAGCTCGCTACTGGTGAGATGACAAATTCCAATGAGACATATAGCATGGGACTGCAACATGTCCCATACAACACCCCTTTCTTCCCTCTCGCCCAGCATAATGCAGCCCGCCAGAACGGTGGAACCCAGTTGCCACCACAATTCCAACCACCCCGTCCTAATGTGCCCAATCACATGCTATCCCATCCAAACGGTTTGCAAGATATCATGCAGCAAGACCCTCTTGGCCGGCTTCAGGGTTTGGACATCAGCAAAGGGCCTCTAGTTGTGAAATCAGAGAGCAGCTCGATCTCTGCAAGTGAAAGCAGCAGCACCTTCTAA
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| Protein seq | MQEPKHTDPAAMRGAHHRRARSEVAFRLPDDLDLGGGGAGAFDEIGSEDDLFSTFMDIEKISSGPAAAGGSDRDRAAETSSPPRPKHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMGLQHVPYNTPFFPLAQHNAARQNGGTQLPPQFQPPRPNVPNHMLSHPNGLQDIMQQDPLGRLQGLDISKGPLVVKSESSSISASESSSTF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0336200 | Os03t0336200-02 | Chr03 | 12452164 | 12456329 | + | irgsp1_rep | ||
| CDS seq | ATGCAGGAGCCAAAGCACACCGATCCGGCGGCCATGCGCGGGGCGCACCACCGCCGGGCCAGATCTGAGGTCGCCTTCCGCCTGCCCGACGACCTCGACCTCGGCGGCGGCGGCGCGGGGGCGTTCGACGAGATCGGCTCCGAGGACGACCTCTTCTCCACCTTCATGGACATCGAGAAGATCTCCTCCGGCCCCGCCGCCGCGGGGGGCTCCGACCGGGACCGCGCCGCGGAGACGTCCTCGCCGCCGCGCCCCAAGCACCGCCACAGCAGCTCCGTCGACGGCTCCGGGTTCTTCGCCGCCGCGCGGAAGGACGCCGCCGCATCGCTGGCGGAGGTCATGGAGGCTAAGAAGGCCATGACCCCCGAGCAGCTCTCCGAGCTCGCCGCCATCGACCCCAAGCGCGCCAAAAGAATTCTGGCGAACAGACAATCTGCAGCTCGGTCAAAAGAGAGAAAAGCTCGTTACATAACAGAACTTGAGCGGAAGGTTCAAACTCTTCAGACTGAAGCCACTACTCTCTCAGCACAACTCACACTATTTCAGAGAGACACAACTGGGCTTTCTGCAGAAAATGCAGAGCTCAAGATACGGTTGCAGGCCATGGAACAACAGGCTCAACTGCGAGATGCTCTGAATGATGCACTAAAGCAGGAACTGGAGAGGCTTAAGCTCGCTACTGGTGAGATGACAAATTCCAATGAGACATATAGCATGGGACTGCAACATGTCCCATACAACACCCCTTTCTTCCCTCTCGCCCAGCATAATGCAGCCCGCCAGAACGGTGGAACCCAGTTGCCACCACAATTCCAACCACCCCGTCCTAATGTGCCCAATCACATGCTATCCCATCCAAACGGTTTGCAAGATATCATGCAGCAAGACCCTCTTGGCCGGCTTCAGGGTTTGGACATCAGCAAAGGGCCTCTAGTTGTGAAATCAGAGAGCAGCTCGATCTCTGCAAGTGAAAGCAGCAGCACCTTCTAA
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| Protein seq | MQEPKHTDPAAMRGAHHRRARSEVAFRLPDDLDLGGGGAGAFDEIGSEDDLFSTFMDIEKISSGPAAAGGSDRDRAAETSSPPRPKHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMGLQHVPYNTPFFPLAQHNAARQNGGTQLPPQFQPPRPNVPNHMLSHPNGLQDIMQQDPLGRLQGLDISKGPLVVKSESSSISASESSSTF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0336200 | RBH | 0.046152 | 0.000000 | 3.925063 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21800 | RBH | 0.029663 | 0.000000 | 0.988394 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016900 | RBH | 0.112146 | 1.549073 | 2.493005 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016740 | RBH | 0.0 | 3.525213 | 3.261582 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016760 | RBH | 0.000000 | 1.316091 | 3.439442 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016760 | RBH | 0.000000 | 0.309006 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016540 | RBH | 0.617602 | 18.098923 | 8.139916 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0205800 | RBH | 4.151562 | 9.2409205 | 16.831478 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016410 | RBH | 0.0 | 0.087937 | 0.817982 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0210400 | RBH | 4.725665 | 5.578794 | 21.581731 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016640 | RBH | 0.0 | 0.282949 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016680 | RBH | 0.0 | 17.802248 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016710 | RBH | 0.0 | 7.340062 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016600 | RBH | 0.0 | 0.844120 | 0.810404 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016510 | RBH | 0.0 | 3.283208 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016450 | RBH | 0.0 | 4.696602 | 2.247135 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016430 | RBH | 0.0 | 8.164556 | 3.609622 |
