Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0301600 | OGI:03028670 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:10620065-10620827 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGGTGCAGTCCCAGTGCACCAGCCAGTCATCACCAACCACCATCCAGTCCCAGTCCGTGCAGATGCCGGCTTCAGAGAACGCACAGATTCTGAACCTACCTCAAGGTGCCCATTGCTTTCCATCAGGTGTCTTAGCTAGGTCAAAGCCCTCATAGATCATCCAACACTGACAGAGAAAGAACTCGCCACTGTTTGGTGTACAGGTGAGCTGCCGAGCTCTTCACAGGACTGCTTGCTGAATCCGCTCCAGTACCAGCCGCTCAACGAGGCGCTGGAAGACGTCCTCCAGACAGCCGGCGGCAGCCACCACCAACACCAGGGTGGTAGCGGCGAGCTGCCATGGATAGCGTCGTCGTTCGGAGCGGGCGGCTTCGTCGACGCGAGGGACCCTTTCGACGTGCAGTTCAGCGGCTCCCAGCCGTGCGGGCTGCTGCTCTCCAGCAGCGGCGCCAGATTGTGAGGACGAGACGCGTGCGTGTGCAGCAATGTGCAATGCAAGCCTCCGTCTCTTTGCATGGAGCCGAGTAATGGCGCCGCCATTGTAGCTAAGCTAAGCTCGAGGGTAGTGGCGTGGGGTCCATCTAACTGTTTGTCTGCTAACACTCACAAAGTTGTTTTGGGTGGGATATATAGAGAGAGAGATGATGATGCAGAGAAGACAATAAGTGGGTATAATTTGGTAGGGTATGTGATCTAATCTGTGCTGTTTTGTGGCATGTAAAATGACAAGAAAGCACTGGTCTGGAGATTTTTTTTAGTGCT
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| CDS seq | ATGCCGGCTTCAGAGAACGCACAGATTCTGAACCTACCTCAAGGTGAGCTGCCGAGCTCTTCACAGGACTGCTTGCTGAATCCGCTCCAGTACCAGCCGCTCAACGAGGCGCTGGAAGACGTCCTCCAGACAGCCGGCGGCAGCCACCACCAACACCAGGGTGGTAGCGGCGAGCTGCCATGGATAGCGTCGTCGTTCGGAGCGGGCGGCTTCGTCGACGCGAGGGACCCTTTCGACGTGCAGTTCAGCGGCTCCCAGCCGTGCGGGCTGCTGCTCTCCAGCAGCGGCGCCAGATTGTGA |
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| Protein seq | MPASENAQILNLPQGELPSSSQDCLLNPLQYQPLNEALEDVLQTAGGSHHQHQGGSGELPWIASSFGAGGFVDARDPFDVQFSGSQPCGLLLSSSGARL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0301600 | Os03t0301600-01 | Chr03 | 10620065 | 10620827 | + | irgsp1_rep | ||
| CDS seq | ATGCCGGCTTCAGAGAACGCACAGATTCTGAACCTACCTCAAGGTGAGCTGCCGAGCTCTTCACAGGACTGCTTGCTGAATCCGCTCCAGTACCAGCCGCTCAACGAGGCGCTGGAAGACGTCCTCCAGACAGCCGGCGGCAGCCACCACCAACACCAGGGTGGTAGCGGCGAGCTGCCATGGATAGCGTCGTCGTTCGGAGCGGGCGGCTTCGTCGACGCGAGGGACCCTTTCGACGTGCAGTTCAGCGGCTCCCAGCCGTGCGGGCTGCTGCTCTCCAGCAGCGGCGCCAGATTGTGA
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| Protein seq | MPASENAQILNLPQGELPSSSQDCLLNPLQYQPLNEALEDVLQTAGGSHHQHQGGSGELPWIASSFGAGGFVDARDPFDVQFSGSQPCGLLLSSSGARL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0301600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014680 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014510 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014490 | RBH | 0.201472 | 1.309905 | 7.812381 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014470 | RBH | 0.025588 | 0.484922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014300 | RBH | 0.0 | 8.294565 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0179300 | RBH | 1.3137825 | 1.3371515 | 1.262765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014210 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0181700 | RBH | 1.2913885 | 0.7998585 | 3.8360225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014460 | RBH | 0.0 | 2.777965 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014520 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014370 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014340 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014270 | RBH | 0.0 | 0.0 | 0.508360 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0014160 | RBH | 0.0 | 0.0 | 0.0 |
