Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0301500 | OGI:03028630 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:10613655-10615583 | ||||||||
| Gene Symbol | C3H21, OsC3H21 | ||||||||||
| DNA seq | ATGGAGGGGGAGCTCAGCTTCGTCTCGCCGGCGAGGTCGTCCTGCTTCTCCTTCGAGGGCGGCGGTTCTGGATCCCCGACGTGGGTGTCGACGGTGGAGGCGCTGCTCCGCTCGCCTACATCGAGCGTCTCCGATGGCGGCGGAGGTGGTGGTGGTGGCTACAACTCACCGGCACGGGCGTCGTCCCCGCTGCAGAAGCAGATCCCCTACTGCCGCGACGCTGGCGACTTCAGCTCTCTGACATGGGCGTCAACTCTGGAGAAGCCGCTCGAGTCGCCCTCCTCGTGCATCTCCGACGGCCGCGGCGGTGGCTTCGGCTCGCCGACAAGCGCGTTCCCGCCTGAGAAGCTGCTCATCTCGCCCCCAACGTGCGTCTCCGACAACCGCGGCGTCGGCAACGTTGGCGGCTTCCCCTCTCTGCCATGGGCGTCGTCTCTGGAGAGGCTACTCACGTCGCCCTCATCGTGCGTCTCCGACAGCCGCGGCGTCGGCAACGCTGACGGCTTCCCTTCTCTGCCATGGGCATCATCTCTGGAGAAGCCACTCACGTCGCCCTCATCCTGCGTCTCCGACGGCCGGAGCGGTGGCTACAGCTCGCCTCTCGGGGCCTCGGCGGAGCGAGAGCGCGAGGTGCGCGAGGCGGAGATGCTCCTGCGCGCGATCGCCGAGCGCTACGACGACTGCTTCCTCCGCCTGCGCGACGCCGCGGCCGAGCTCTCAGACCTCCACCGCGAGCGCCTCCGTCTCGCCGCCGAGAACCTCCACCTCTCCCTCCTTCTCGAGGAGCTCGAGTCCGAGCAGCGGAAGCAGGCATCCGCCATGGCTCCGCCGAAGCTAGAGGAGGACGAAGCAGCACAGGGGGGCGCACCGAAGAGCATCTCCATTCGTTCGCCGGGCTACCTCTCTCAGAAGCCGCCGCAGGGGCAGGCCAGGCCACAGCGCCTCCGTGTTCGCGCTTCTCAGGCGATGGAGGTGAGCCCCCAATTCCTTGCTTGTTAAGCTCGTCAGACATTTGCACACGAACCCTCACAGATAATTCAGAGTTGGTTCATATGTGATTAGATGGTGAGAATGCCAGCATTAATCCTCACAGATAATTTAGAGTTGGTTCATATGTGATTAGATGGTGACATTGTCAGCATTAAACTTTGCAAACCACACATGCTTTGGTAATTTGATGCCTTGTTTGTGATTTAGCAATGATAGGAAGCAATGTTGAATTGGATATGCTCGATTCTAGATTTGCAAATGCGGTAGCAGTCAATCTCTTAATTCTGAAAGTCTAGTTAGTGAATCTCGTTGGATATTTGCACACGAACCCTCACAGATAATTCAGATTTCTAATAATTCCTGCAAATTGGTTCATCCCTGTGATTACTGATTAGATGGTAACAATGTCAACATTTAACTTGCAAAACTACACGTGTTCTGGCAATCTGTGTTAGCAATGATACAAAGCATCAAAGTGTGTTGAATTCAATTCTAAGTTGCATTTGCAATAACTTTCAGCCTTGTCAATATTTCTGAAAGTCTAATTACTGAATCTGGAGAAACTTCTTTAAGATTTCGCACCCCAACTGTTTGATTTTTGTGATGGGGAATCAATGTTCACCGAAGGAGGCAGCGGCAGCAGGGGATGAGGAGGATGAGGAGGACAAGGGCGGCGGCGAGGTGGAGGTGGAGGCGTACAGGCAGGGCGCGGCGAAGACGGAGCTGTGCAACAAGTGGGAGCGCGGCGCGTGCCCCTACGGCGCGCGCTGCCGGTTCGCGCACGGCCTGCAGGAGCTGCGCCCCGTCATCCGCCACCCGCGCTACAAGACCCTCCCCTGCCAGATGTTCGCCGCCGCCTCCGGCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCCCGCTCCGCGCCGCCGCCGCCGAGTCCTTCTGCTACTAG
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| CDS seq | ATGGAGGGGGAGCTCAGCTTCGTCTCGCCGGCGAGGTCGTCCTGCTTCTCCTTCGAGGGCGGCGGTTCTGGATCCCCGACGTGGGTGTCGACGGTGGAGGCGCTGCTCCGCTCGCCTACATCGAGCGTCTCCGATGGCGGCGGAGGTGGTGGTGGTGGCTACAACTCACCGGCACGGGCGTCGTCCCCGCTGCAGAAGCAGATCCCCTACTGCCGCGACGCTGGCGACTTCAGCTCTCTGACATGGGCGTCAACTCTGGAGAAGCCGCTCGAGTCGCCCTCCTCGTGCATCTCCGACGGCCGCGGCGGTGGCTTCGGCTCGCCGACAAGCGCGTTCCCGCCTGAGAAGCTGCTCATCTCGCCCCCAACGTGCGTCTCCGACAACCGCGGCGTCGGCAACGTTGGCGGCTTCCCCTCTCTGCCATGGGCGTCGTCTCTGGAGAGGCTACTCACGTCGCCCTCATCGTGCGTCTCCGACAGCCGCGGCGTCGGCAACGCTGACGGCTTCCCTTCTCTGCCATGGGCATCATCTCTGGAGAAGCCACTCACGTCGCCCTCATCCTGCGTCTCCGACGGCCGGAGCGGTGGCTACAGCTCGCCTCTCGGGGCCTCGGCGGAGCGAGAGCGCGAGGTGCGCGAGGCGGAGATGCTCCTGCGCGCGATCGCCGAGCGCTACGACGACTGCTTCCTCCGCCTGCGCGACGCCGCGGCCGAGCTCTCAGACCTCCACCGCGAGCGCCTCCGTCTCGCCGCCGAGAACCTCCACCTCTCCCTCCTTCTCGAGGAGCTCGAGTCCGAGCAGCGGAAGCAGGCATCCGCCATGGCTCCGCCGAAGCTAGAGGAGGACGAAGCAGCACAGGGGGGCGCACCGAAGAGCATCTCCATTCGTTCGCCGGGCTACCTCTCTCAGAAGCCGCCGCAGGGGCAGGCCAGGCCACAGCGCCTCCGTGAGGCAGCGGCAGCAGGGGATGAGGAGGATGAGGAGGACAAGGGCGGCGGCGAGGTGGAGGTGGAGGCGTACAGGCAGGGCGCGGCGAAGACGGAGCTGTGCAACAAGTGGGAGCGCGGCGCGTGCCCCTACGGCGCGCGCTGCCGGTTCGCGCACGGCCTGCAGGAGCTGCGCCCCGTCATCCGCCACCCGCGCTACAAGACCCTCCCCTGCCAGATGTTCGCCGCCGCCTCCGGCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCCCGCTCCGCGCCGCCGCCGCCGAGTCCTTCTGCTACTAG
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| Protein seq | MEGELSFVSPARSSCFSFEGGGSGSPTWVSTVEALLRSPTSSVSDGGGGGGGGYNSPARASSPLQKQIPYCRDAGDFSSLTWASTLEKPLESPSSCISDGRGGGFGSPTSAFPPEKLLISPPTCVSDNRGVGNVGGFPSLPWASSLERLLTSPSSCVSDSRGVGNADGFPSLPWASSLEKPLTSPSSCVSDGRSGGYSSPLGASAEREREVREAEMLLRAIAERYDDCFLRLRDAAAELSDLHRERLRLAAENLHLSLLLEELESEQRKQASAMAPPKLEEDEAAQGGAPKSISIRSPGYLSQKPPQGQARPQRLREAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWERGACPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRHSPLRAAAAESFCY |
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| Function | Putative zinc finger CCCH domain-containing protein 21 [UniProtKB/Swiss-Prot:Q10MN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0301500 | Os03t0301500-00 | Chr03 | 10613655 | 10615583 | + | irgsp1_rep | ||
| CDS seq | ATGGAGGGGGAGCTCAGCTTCGTCTCGCCGGCGAGGTCGTCCTGCTTCTCCTTCGAGGGCGGCGGTTCTGGATCCCCGACGTGGGTGTCGACGGTGGAGGCGCTGCTCCGCTCGCCTACATCGAGCGTCTCCGATGGCGGCGGAGGTGGTGGTGGTGGCTACAACTCACCGGCACGGGCGTCGTCCCCGCTGCAGAAGCAGATCCCCTACTGCCGCGACGCTGGCGACTTCAGCTCTCTGACATGGGCGTCAACTCTGGAGAAGCCGCTCGAGTCGCCCTCCTCGTGCATCTCCGACGGCCGCGGCGGTGGCTTCGGCTCGCCGACAAGCGCGTTCCCGCCTGAGAAGCTGCTCATCTCGCCCCCAACGTGCGTCTCCGACAACCGCGGCGTCGGCAACGTTGGCGGCTTCCCCTCTCTGCCATGGGCGTCGTCTCTGGAGAGGCTACTCACGTCGCCCTCATCGTGCGTCTCCGACAGCCGCGGCGTCGGCAACGCTGACGGCTTCCCTTCTCTGCCATGGGCATCATCTCTGGAGAAGCCACTCACGTCGCCCTCATCCTGCGTCTCCGACGGCCGGAGCGGTGGCTACAGCTCGCCTCTCGGGGCCTCGGCGGAGCGAGAGCGCGAGGTGCGCGAGGCGGAGATGCTCCTGCGCGCGATCGCCGAGCGCTACGACGACTGCTTCCTCCGCCTGCGCGACGCCGCGGCCGAGCTCTCAGACCTCCACCGCGAGCGCCTCCGTCTCGCCGCCGAGAACCTCCACCTCTCCCTCCTTCTCGAGGAGCTCGAGTCCGAGCAGCGGAAGCAGGCATCCGCCATGGCTCCGCCGAAGCTAGAGGAGGACGAAGCAGCACAGGGGGGCGCACCGAAGAGCATCTCCATTCGTTCGCCGGGCTACCTCTCTCAGAAGCCGCCGCAGGGGCAGGCCAGGCCACAGCGCCTCCGTGAGGCAGCGGCAGCAGGGGATGAGGAGGATGAGGAGGACAAGGGCGGCGGCGAGGTGGAGGTGGAGGCGTACAGGCAGGGCGCGGCGAAGACGGAGCTGTGCAACAAGTGGGAGCGCGGCGCGTGCCCCTACGGCGCGCGCTGCCGGTTCGCGCACGGCCTGCAGGAGCTGCGCCCCGTCATCCGCCACCCGCGCTACAAGACCCTCCCCTGCCAGATGTTCGCCGCCGCCTCCGGCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCCCGCTCCGCGCCGCCGCCGCCGAGTCCTTCTGCTACTAG
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| Protein seq | MEGELSFVSPARSSCFSFEGGGSGSPTWVSTVEALLRSPTSSVSDGGGGGGGGYNSPARASSPLQKQIPYCRDAGDFSSLTWASTLEKPLESPSSCISDGRGGGFGSPTSAFPPEKLLISPPTCVSDNRGVGNVGGFPSLPWASSLERLLTSPSSCVSDSRGVGNADGFPSLPWASSLEKPLTSPSSCVSDGRSGGYSSPLGASAEREREVREAEMLLRAIAERYDDCFLRLRDAAAELSDLHRERLRLAAENLHLSLLLEELESEQRKQASAMAPPKLEEDEAAQGGAPKSISIRSPGYLSQKPPQGQARPQRLREAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWERGACPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRHSPLRAAAAESFCY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0301500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014490 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014490 | SBH | 0.201472 | 1.309905 | 7.812381 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014470 | SBH | 0.025588 | 0.484922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0179200 | RBH | 0.0121655 | 0.2008225 | 0.033702 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014190 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0181500 | RBH | 0.1634195 | 0.2222685 | 0.216517 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014440 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014320 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014260 | RBH | 0.0 | 0.0 | 0.258255 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0014150 | RBH | 0.0 | 0.0 | 0.0 |
