Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0300700 | OGI:03028540 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:10575398-10576700 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAAATTCGCATCTAACCAACTAACCAAGATCTTCAGAAGCAACGCATAACTGAATCCCAAAAATCCTAAGGACCTTCTTCAGACTGAGCACCACAATCGAACCAAAGACCATCGACATGCTAGAAATAACTGAATCCCAAAATTCCCAAGGACCTTCCTCAAACTAATCAGCATAATCGAACCAAAGACCATCGACATGATAAAAACAACACAGTAGCACTACTCCCACAGTTCACCGGAGCAAATCGACAGAGGCCGGCATCTCATTCTTTATACGGGTCCCTCTGAGCTCTCTGCATTTCCAAGTTATACAACGCCTCTTGCACCAGAGCCGATTGGGCAGCAGCATCCACGGTAGCAGGAGTTTGCTGCCACATCCTATCTCTGATCTCTTCTCGCAGGCCTCTTATGAATAATGCCACGTCGAAGCAGTTGCTGGAGACTGGATCGAACAGCTTGGCATGGTACAAGCGCTCCTCGAACTGGTCTCTGTACTCGCTCACTGTCATGATCCCCTCCTGCCTCAGATCCAAGAGTGCCGTGAGCTTCTGCTTGTGATCATAGGGCCCAAATCTCTCCTCCACGGCCTCACAGAACCGACCCCAATCACGCTCATGGCGCTTCTCATAGGTCATCATCCACAGCTCAGCCATCCCCTCCATGTGCATCGAAGCCCAGGAAACCCACATCTTCATTGGCATGCCGTAGAACTCGAAGTAGCGCGTGCACTTGGTGATCCACAGGCGCGGGAACGTCCCGCTGAAAGTGGGGAACTTCAGCTTCGCCAGACGAAAGAACCCTCCCGAGTAGCCGTCGATCCTGGCGGCGCGCGACGCCGCCGCCGCCGCCTGCTCCTTCTTCACGTCCTCCACCAGCGCCGCCGCAACGGCGATCTGCTTGGACAGCTCCTCGAGGCGATGTTGGTGCCCCTCGACCACCTGGCTGAGCAAGGGCAGCGCCTTCAGCTGCTCCGCGATGCGGTCCAGCTTCGCCTCCATCTTGCCGTCGGGGAGAACCGTAGGTTGCTGCGGCCCAGAAATTTCGAGACAAATCAGGTCCGATGAGGTCGGAGGCGTCCGCGAACGAGACAAATAATTAGGTTTTCAAAGATCAAATAAACCATGAAGAAGACGAATAAATAAAGAACACTAAAAGAGAAAAAGAAAATCATGGCGCGGGTCGAGAAGGGGTGGTTGCTACGACCTCACCTTGGCCTTCGTTCGATCGTCTCGTCTCGTCGGCGTCGCCGGTTGCGCTGCAACCTGCTGCGGCGGAGCACGCGGAAGCGGTGGGCACTTCTCC
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| CDS seq | ATGGAGGCGAAGCTGGACCGCATCGCGGAGCAGCTGAAGGCGCTGCCCTTGCTCAGCCAGGTGGTCGAGGGGCACCAACATCGCCTCGAGGAGCTGTCCAAGCAGATCGCCGTTGCGGCGGCGCTGGTGGAGGACGTGAAGAAGGAGCAGGCGGCGGCGGCGGCGTCGCGCGCCGCCAGGATCGACGGCTACTCGGGAGGGTTCTTTCGTCTGGCGAAGCTGAAGTTCCCCACTTTCAGCGGGACGTTCCCGCGCCTGTGGATCACCAAGTGCACGCGCTACTTCGAGTTCTACGGCATGCCAATGAAGATGTGGGTTTCCTGGGCTTCGATGCACATGGAGGGGATGGCTGAGCTGTGGATGATGACCTATGAGAAGCGCCATGAGCGTGATTGGGGTCGGTTCTGTGAGGCCGTGGAGGAGAGATTTGGGCCCTATGATCACAAGCAGAAGCTCACGGCACTCTTGGATCTGAGGCAGGAGGGGATCATGACAGTGAGCGAGTACAGAGACCAGTTCGAGGAGCGCTTGTACCATGCCAAGCTGTTCGATCCAGTCTCCAGCAACTGCTTCGACGTGGCATTATTCATAAGAGGCCTGCGAGAAGAGATCAGAGATAGGATGTGGCAGCAAACTCCTGCTACCGTGGATGCTGCTGCCCAATCGGCTCTGGTGCAAGAGGCGTTGTATAACTTGGAAATGCAGAGAGCTCAGAGGGACCCGTATAAAGAATGA
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| Protein seq | MEAKLDRIAEQLKALPLLSQVVEGHQHRLEELSKQIAVAAALVEDVKKEQAAAAASRAARIDGYSGGFFRLAKLKFPTFSGTFPRLWITKCTRYFEFYGMPMKMWVSWASMHMEGMAELWMMTYEKRHERDWGRFCEAVEERFGPYDHKQKLTALLDLRQEGIMTVSEYRDQFEERLYHAKLFDPVSSNCFDVALFIRGLREEIRDRMWQQTPATVDAAAQSALVQEALYNLEMQRAQRDPYKE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0300700 | Os03t0300700-01 | Chr03 | 10575398 | 10576700 | - | irgsp1_rep | ||
| CDS seq | ATGGAGGCGAAGCTGGACCGCATCGCGGAGCAGCTGAAGGCGCTGCCCTTGCTCAGCCAGGTGGTCGAGGGGCACCAACATCGCCTCGAGGAGCTGTCCAAGCAGATCGCCGTTGCGGCGGCGCTGGTGGAGGACGTGAAGAAGGAGCAGGCGGCGGCGGCGGCGTCGCGCGCCGCCAGGATCGACGGCTACTCGGGAGGGTTCTTTCGTCTGGCGAAGCTGAAGTTCCCCACTTTCAGCGGGACGTTCCCGCGCCTGTGGATCACCAAGTGCACGCGCTACTTCGAGTTCTACGGCATGCCAATGAAGATGTGGGTTTCCTGGGCTTCGATGCACATGGAGGGGATGGCTGAGCTGTGGATGATGACCTATGAGAAGCGCCATGAGCGTGATTGGGGTCGGTTCTGTGAGGCCGTGGAGGAGAGATTTGGGCCCTATGATCACAAGCAGAAGCTCACGGCACTCTTGGATCTGAGGCAGGAGGGGATCATGACAGTGAGCGAGTACAGAGACCAGTTCGAGGAGCGCTTGTACCATGCCAAGCTGTTCGATCCAGTCTCCAGCAACTGCTTCGACGTGGCATTATTCATAAGAGGCCTGCGAGAAGAGATCAGAGATAGGATGTGGCAGCAAACTCCTGCTACCGTGGATGCTGCTGCCCAATCGGCTCTGGTGCAAGAGGCGTTGTATAACTTGGAAATGCAGAGAGCTCAGAGGGACCCGTATAAAGAATGA
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| Protein seq | MEAKLDRIAEQLKALPLLSQVVEGHQHRLEELSKQIAVAAALVEDVKKEQAAAAASRAARIDGYSGGFFRLAKLKFPTFSGTFPRLWITKCTRYFEFYGMPMKMWVSWASMHMEGMAELWMMTYEKRHERDWGRFCEAVEERFGPYDHKQKLTALLDLRQEGIMTVSEYRDQFEERLYHAKLFDPVSSNCFDVALFIRGLREEIRDRMWQQTPATVDAAAQSALVQEALYNLEMQRAQRDPYKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0300700 | RBH | 0.365862 | 1.075750 | 2.656858 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18880 | RBH | 0.247415 | 0.723532 | 0.683927 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014620 | RBH | 0.0 | 0.0 | 0.907307 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014440 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014460 | RBH | 1.805976 | 5.102315 | 4.185543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014440 | RBH | 0.120342 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014240 | RBH | 0.0 | 0.0 | 3.527318 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0178700 | RBH | 0 | 0.05483 | 0.3631655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014150 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0180900 | RBH | 0.0538125 | 0.080909 | 0.510382 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014390 | RBH | 0.161491 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014210 | RBH | 0.0 | 0.0 | 0.526750 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0014100 | RBH | 0.0 | 0.0 | 2.557359 |
