Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0233700 | OGI:03018650 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:7082665-7084749 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAACAATACTACAATCATTAGAACAATATATTATAGGAGTATATGACTATAACTAGGGCATTTCCATAACAAAATACTCCGTACTAGTCTGGCAACCATATGGAACACTACGGTAATTTGTACACTTATAAACATGGTAGTCCTACATCCATATTGCACTAAGTACTCCTACGTCCATTGTGCATTTCCACAACAAAATACCACAACAAAATCACATTCAACAGTTTGGTAGTCCTAAATTCTTCTACGCTTGCATACCTGGGTATAGGTAGGAAACATGATATCGTGCAAATCTTTCATATGTAAATTCCGAGGCACACCGACACCCTCATCATCAGTCTCTGCGTCGGAGATTGACTTTCTCTCGGCGATGCATGCCTTCTTCTCAGGCACACCGACGCCCTCATCATCAGTTTCTGCATCGGAGATTGACTTCCCCTCGTCGACGCATGCCTTCTTCTCGGAGCTTGTGTTCACCTTCCTTGGATTTCCCTCATAGTCCACATCAGCGATTGCCTTTTTCTCATCAGCCCATGCCTTCTCGATGGTTTCCATGTCGATGCTTGGCTTCTCATACTCTGAAATAGCCCGAAGCCAATTGTGCAACATTGTACTGTAAAGAAGATAAGACAAATCAATATAAATCAAGATGTGACTCAATTTGCATGCTACAAATGCATAACCATCCCAAATCGACAATCTAGTGTGAATCACATACCCCAAGCGAGGACGCACTCCGAGCTGGCGCGGCCCTCCTGATTTGCTTGTCACTGGATGGTTGCACCGTAAGGAGAAATAAATGGAACATCAAAAAGCACATAATTTAACAAAATTGAATGGAAAGGACTAATAATTAAATAAATAAGAGAGGAACCCTATGCCAATCTCCTCGATTGGAACATCTTGTTGTGTTTCAGGCACAAATTCGTCATCACAACCTTGTGAGTTGAACTCATTGCCAGCCCCTTCATCATCCAAGTCAGGGACAAACATCAAGTCGTCAAAACAAACGCCTTCCGCCACTGGACGCGGCTCTTTGCCTAGCAACCACCACGTCCCGCGAACCCTGCCGCTGGGCCGCATTCTGCCGCCAGCCCGTAAACCGCTGCCGGCGACATGTTAAATCATTATATTCCTATTTTAAATAAATTTTTTAATTTTAAACTATCAAAATGAAACATATAAACTTTAAATCTAACATGAATCTAAGATATGATGTGCCTAACAGCGTCTAAGATTAATAAAATTGACACTTTAGTTTTTTTAACACCGTTAATTTCCTAGTACTCCGTATGATCTAAGAGTAGTTGGCAATGTATTAAGAACCTCTTCAGCTCTAAATAAGAACTGCAACTTCAAATCCTAGCACTTTGCCTAATGGATAACTACATCCCTGCAAAACATCCACCTAAAATCGCTCCATTCTTCATTCTTGACCAATTTAGCATGGTGGCATCTAGATCCTGGTTAAATGCGATTAAATTGATACTCCTACTTGTGAGGCTTGTCCCATATAGTTCACTGGCTAGAACGTTGCTGCAAATTTCATGTCCAGTACCACACCAATCAATGGCTACATCCAAGTCATACCCACGCTAGCTTCCAAATCTTGCATTGCGATGCTGCGGTGTCAAAATCAAACAATCCAAAGCGTAAACTGACATCCAATGCAAGATCCAAAACAAACACAGGTACTACCAACAACGTGGAAACGGAAGCACGCACATCGAACTCGGCTGCGCTGTATATATATACCTGGACGTTGAACTTGACGAAGGCGACGGCGGCGTGCGCGGCGGCCCGGCCGAACGAGAGCAGCGTGTTCTCCCGCTCCCACACCACCTCGATTCGCTTCTCCGGTGGTGCCCCCACCGCACGGGCCAGGTTGGGCACCGGTGGCGGTGGCGCATGGGCCAGGTTGGCCGCCGCCATTGGCTGCCGCACCGCCGGCGTTGGCGTCAACGGATGGGAGGTGGAAGGGAAGGAGCTCGGATGGATGGGAGGAGGTAGAAGAAGATGCGGGTGGGAGGGAGGCGCTGATGGAGGGGACGGAGAAAAAGCGAAGAAAATCGGGAGGGGAACGA
More
|
||||||||||
| CDS seq | ATGCGCCACCGCCACCGGTGCCCAACCTGGCCCGTGCGGTGGGGGCACCACCGGAGAAGCGAATCGAGGTGGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCGGGCCGCCGCGCACGCCGCCGTCGCCTTCGTCAAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCCAGCGGCAGGGTTCGCGGGACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTTTGTTTTGACGACTTGATGTTTGTCCCTGACTTGGATGATGAAGGGGCTGGCAATGAGTTCAACTCACAAGGTTGTGATGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCGAGGAGATTGGCATAGGGTTCCTCTCTTATTTATTTAATTATTAG
More
|
||||||||||
| Protein seq | MRHRHRCPTWPVRWGHHRRSESRWCGSGRTRCSRSAGPPRTPPSPSSSSTSSLRAGGRMRPSGRVRGTWWLLGKEPRPVAEGVCFDDLMFVPDLDDEGAGNEFNSQGCDDEFVPETQQDVPIEEIGIGFLSYLFNY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0233700 | Os03t0233700-00 | Chr03 | 7082665 | 7084749 | - | irgsp1_rep | ||
| CDS seq | ATGCGCCACCGCCACCGGTGCCCAACCTGGCCCGTGCGGTGGGGGCACCACCGGAGAAGCGAATCGAGGTGGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCGGGCCGCCGCGCACGCCGCCGTCGCCTTCGTCAAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCCAGCGGCAGGGTTCGCGGGACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTTTGTTTTGACGACTTGATGTTTGTCCCTGACTTGGATGATGAAGGGGCTGGCAATGAGTTCAACTCACAAGGTTGTGATGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCGAGGAGATTGGCATAGGGTTCCTCTCTTATTTATTTAATTATTAG
More
|
|||||||
| Protein seq | MRHRHRCPTWPVRWGHHRRSESRWCGSGRTRCSRSAGPPRTPPSPSSSSTSSLRAGGRMRPSGRVRGTWWLLGKEPRPVAEGVCFDDLMFVPDLDDEGAGNEFNSQGCDDEFVPETQQDVPIEEIGIGFLSYLFNY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0233700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13120 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0694200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009930 | RBH | 0.0 | 0.0 | 1.095295 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009790 | RBH | 0.0 | 0.0 | 0.757591 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009830 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009760 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009650 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0116800 | RBH | 1.2464945 | 3.2089065 | 1.7556835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0116800 | RBH | 0.0672765 | 0.1371595 | 0.083547 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009660 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009730 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009580 | RBH | 0.0 | 0.0 | 0.000000 |
