Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0226901 | OGI:03017620 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:6665660-6668464 | ||||||||
| Gene Symbol | CMT1, OsCMT1, OsCMT3b | ||||||||||
| DNA seq | ATGAAACATGAGACAAGTCCCTCAAATGCAGATAAAATCCTCAAATCCCTCACTATCCTCTCCCATGGTTATGCATCCTTTCTTTTTTTTTTCCTTTTAGATAATATCACCATTTTTTTCCTCCCATATTTTTGCAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCGCCGTTCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTCCTGCCAGCCCGCCACCGTCCACACCGTCGGCCCCACCGACCAATTCCTCGGGCTCAGCACCGTCGCCACCTTCCCCGTCGCAGTCGGCGCCACCGGCGAATACCGGCGGCGGCGGGTCCCCACCACCATCGCATGGCTCGCCGCCAGCGCCAAAGGCCGTCCAGTCTCAACCCGCTCCGAAGCGTAGCGGCGACGGTGGCTCCTCCTCGGACAGTGGGAGCTCCAAGGAGGGAGGCAGCTCGAGTGACCGTGGCAAGAGCGAAAGCAACGGCAACAGGCCGGGGCCAGAGGCTGCCATCATCGCCGGCATGGTCATCGGGTTCTTCACCTTCGCCCTGCTGCTGGCCATCGTCGCCTGCGTGTGCTGCTCCAAGAAGAAGAAGAGACCTCCCCACATGCACATGCCGTACTACACCGACGAGAACGGTAAGCACACATCTACACGCGACGCGACGGCATGGTGCGCTCGCCACGCATGCCGCAGAGAGATCTTGTGCAGTTGACATGGGGTGCGCTCCCGCGTCCGCGTGCATGCAGGGAAAGTGTACTACGCGAACAGCATGCCCAGGTGGCAGAACAGCGTGGACCAAGGCGGCGGCTGGCACGCGCAGTACTCGCCAGGCCAGGCGCCGCCGAGCAGCGAGATGAGCGGGTCGCACGGGGCGGGGCCGCTGCCGCCGCCGTCACCGGGCATGGCGCTGGGGTTCTCGAAGAGCTCCTTCTCGTACGACGAGCTGGCGCTGGCGACGGGCGGGTTCTCGTCGGCGAACCTGCTGGGGCAGGGCGGGTTCGGGTACGTGTACAGGGGCGTCCTCGCGGGCAGCGGCAAGGAGGTGGCGGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGCGAGCGCGAGTTCCAGGCCGAGGTGGAGATCATCAGCCGTGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCTCATCCCAGCGCCTCCTCGTCTACGAGTTCGTCCCCAACGACACCCTTGAGCACCACCTCCACGGTCTCCATATCTTTCCTGCTCTTTTCCCAGCCATCGTAACGCGCCATTCGTACGTGAGATTTTTGTTCGATTCTGACACGCGCGTGTGCCGGATGCGTGCAGGGAAGGGCGTGCCGGTGATGGCCTGGACGACGAGGCTCGCCATCGCGCTCGGCTCAGCCAAGGGCCTCGCGTACCTTCACGAAGATTGTAAGGTCCCTAATAAACTTTTCGTTTAATTTGCAGTCTGCAGGGACAAATCCTGTCTGTACGTCCTTCTAACGATCTGATTTGTTGCATTGTGGTTGTCACGTACGAAGGCCATCCTAGGATCATCCACCGTGACATCAAGGCGGCCAACATCCTCTTGGACGAGAATTTCGATGCTAAGGTGAACACACCAGCTTGTTTAAGCTGCGTTTAAGATTGAACTAGCTAGTCCTGACTTGTTTGAATTCATTTGCATTAGGTTGCGGATTTCGGGCTTGCAAAGCTAACCACGGACACCAACACGCATGTCTCAACGCGCGTCATGGGGACTTTCGGGTTAGTGCAACATGAGACCGTGGCTCGCTCGTTGACATGCATGACGGACGAGCGGGCACGGATGACGAGTCCCAGTTACATGTGTGTAGGTATCTGGCTCCCGAGTACGCGTCGAGCGGCAAGCTGACGGACAAATCGGACGTCTTCTCCTTCGGCGTCATGCTGCTCGAGCTGATCACCGGCCGGCGACCGGTCGACCCAACGAACTACATGGAGGACAGCTTGGTTGACTGGGTGAGCGTCACCCTCGCCTCCATCGCAAACTACCACTACTACATCCTAAGCTTACATACGTGGTTCTGACACGCCGGCCACTCGATCGCTTGGTCGTGACAGGCGAGGCCCCTCCTGGCGCGCGCCTTGTCGGAGGACGGCAGTTTCGACGAGCTGATCGACCAGCGCCTGGAGAACAAGTTCGACCGGCTGGAGATGGAGCGCATGGCCGCATGCGCTGCCGCCGCCGTCCGCCACTCCGCCAAGCGCCGCCCAAAGATGAAGCAGGTAATTGAAACCGCACAGCTCACAGTGATCAAACTGATCATCGATCACCTGGTTGCCTGGCAATATATGATATTTTTTCTTCTTTGCGTGTATTGCAGATTGTCCGTGCGCTGGAGGGCGACGCGTCGCTGGACGACCTGAACGAAGGGGTGAAGCCCGGGCAGAGCATGATGTTCAGCACGGGGTCGGAGTACGACTCCGGCAACTACGCTTCCGACATCAACAGGTTGAGGAAGGTGGCCTTCGAGAGCAGCATCGAGGACAGCAGCGAGTACGGGACCCACTCCAGCGCCGACTCGGGGGAGCCACCCCGGCGGCAACAGCATCGCTAG
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| CDS seq | ATGAAACATGAGACAAGTCCCTCAAATGCAGATAAAATCCTCAAATCCCTCACTATCCTCTCCCATGGTTATGCATCCTTTCTTTTTTTTTTCCTTTTAGATAATATCACCATTTTTTTCCTCCCATATTTTTGCAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCGCCGTTCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTCCTGCCAGCCCGCCACCGTCCACACCGTCGGCCCCACCGACCAATTCCTCGGGCTCAGCACCGTCGCCACCTTCCCCGTCGCAGTCGGCGCCACCGGCGAATACCGGCGGCGGCGGGTCCCCACCACCATCGCATGGCTCGCCGCCAGCGCCAAAGGCCGTCCAGTCTCAACCCGCTCCGAAGCGTAGCGGCGACGGTGGCTCCTCCTCGGACAGTGGGAGCTCCAAGGAGGGAGGCAGCTCGAGTGACCGTGGCAAGAGCGAAAGCAACGGCAACAGGCCGGGGCCAGAGGCTGCCATCATCGCCGGCATGGTCATCGGGTTCTTCACCTTCGCCCTGCTGCTGGCCATCGTCGCCTGCGTGTGCTGCTCCAAGAAGAAGAAGAGACCTCCCCACATGCACATGCCGTACTACACCGACGAGAACGGGAAAGTGTACTACGCGAACAGCATGCCCAGGTGGCAGAACAGCGTGGACCAAGGCGGCGGCTGGCACGCGCAGTACTCGCCAGGCCAGGCGCCGCCGAGCAGCGAGATGAGCGGGTCGCACGGGGCGGGGCCGCTGCCGCCGCCGTCACCGGGCATGGCGCTGGGGTTCTCGAAGAGCTCCTTCTCGTACGACGAGCTGGCGCTGGCGACGGGCGGGTTCTCGTCGGCGAACCTGCTGGGGCAGGGCGGGTTCGGGTACGTGTACAGGGGCGTCCTCGCGGGCAGCGGCAAGGAGGTGGCGGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGCGAGCGCGAGTTCCAGGCCGAGGTGGAGATCATCAGCCGTGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCTCATCCCAGCGCCTCCTCGTCTACGAGTTCGTCCCCAACGACACCCTTGAGCACCACCTCCACGGGAAGGGCGTGCCGGTGATGGCCTGGACGACGAGGCTCGCCATCGCGCTCGGCTCAGCCAAGGGCCTCGCGTACCTTCACGAAGATTGCCATCCTAGGATCATCCACCGTGACATCAAGGCGGCCAACATCCTCTTGGACGAGAATTTCGATGCTAAGGTTGCGGATTTCGGGCTTGCAAAGCTAACCACGGACACCAACACGCATGTCTCAACGCGCGTCATGGGGACTTTCGGGTATCTGGCTCCCGAGTACGCGTCGAGCGGCAAGCTGACGGACAAATCGGACGTCTTCTCCTTCGGCGTCATGCTGCTCGAGCTGATCACCGGCCGGCGACCGGTCGACCCAACGAACTACATGGAGGACAGCTTGGTTGACTGGGCGAGGCCCCTCCTGGCGCGCGCCTTGTCGGAGGACGGCAGTTTCGACGAGCTGATCGACCAGCGCCTGGAGAACAAGTTCGACCGGCTGGAGATGGAGCGCATGGCCGCATGCGCTGCCGCCGCCGTCCGCCACTCCGCCAAGCGCCGCCCAAAGATGAAGCAGATTGTCCGTGCGCTGGAGGGCGACGCGTCGCTGGACGACCTGAACGAAGGGGTGAAGCCCGGGCAGAGCATGATGTTCAGCACGGGGTCGGAGTACGACTCCGGCAACTACGCTTCCGACATCAACAGGTTGAGGAAGGTGGCCTTCGAGAGCAGCATCGAGGACAGCAGCGAGTACGGGACCCACTCCAGCGCCGACTCGGGGGAGCCACCCCGGCGGCAACAGCATCGCTAG
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| Protein seq | MKHETSPSNADKILKSLTILSHGYASFLFFFLLDNITIFFLPYFCRGLSRRGAEEGEARRAVPFQNILSWEGWNRLDHRRGEIRLDVRREMDDSPLDNLFDGNGLDSSAGADSSSSTGSPPSSTSSSPPSSQSPPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGGSPPPSHGSPPAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRGKSESNGNRPGPEAAIIAGMVIGFFTFALLLAIVACVCCSKKKKRPPHMHMPYYTDENGKVYYANSMPRWQNSVDQGGGWHAQYSPGQAPPSSEMSGSHGAGPLPPPSPGMALGFSKSSFSYDELALATGGFSSANLLGQGGFGYVYRGVLAGSGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSSQRLLVYEFVPNDTLEHHLHGKGVPVMAWTTRLAIALGSAKGLAYLHEDCHPRIIHRDIKAANILLDENFDAKVADFGLAKLTTDTNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDPTNYMEDSLVDWARPLLARALSEDGSFDELIDQRLENKFDRLEMERMAACAAAAVRHSAKRRPKMKQIVRALEGDASLDDLNEGVKPGQSMMFSTGSEYDSGNYASDINRLRKVAFESSIEDSSEYGTHSSADSGEPPRRQQHR |
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| Function | Proline-rich receptor-like protein kinase PERK5 [UniProtKB/Swiss-Prot:Q8GX23] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0226901 | Os03t0226901-00 | Chr03 | 6665660 | 6668464 | + | irgsp1_rep | ||
| CDS seq | ATGAAACATGAGACAAGTCCCTCAAATGCAGATAAAATCCTCAAATCCCTCACTATCCTCTCCCATGGTTATGCATCCTTTCTTTTTTTTTTCCTTTTAGATAATATCACCATTTTTTTCCTCCCATATTTTTGCAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCGCCGTTCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTCCTGCCAGCCCGCCACCGTCCACACCGTCGGCCCCACCGACCAATTCCTCGGGCTCAGCACCGTCGCCACCTTCCCCGTCGCAGTCGGCGCCACCGGCGAATACCGGCGGCGGCGGGTCCCCACCACCATCGCATGGCTCGCCGCCAGCGCCAAAGGCCGTCCAGTCTCAACCCGCTCCGAAGCGTAGCGGCGACGGTGGCTCCTCCTCGGACAGTGGGAGCTCCAAGGAGGGAGGCAGCTCGAGTGACCGTGGCAAGAGCGAAAGCAACGGCAACAGGCCGGGGCCAGAGGCTGCCATCATCGCCGGCATGGTCATCGGGTTCTTCACCTTCGCCCTGCTGCTGGCCATCGTCGCCTGCGTGTGCTGCTCCAAGAAGAAGAAGAGACCTCCCCACATGCACATGCCGTACTACACCGACGAGAACGGGAAAGTGTACTACGCGAACAGCATGCCCAGGTGGCAGAACAGCGTGGACCAAGGCGGCGGCTGGCACGCGCAGTACTCGCCAGGCCAGGCGCCGCCGAGCAGCGAGATGAGCGGGTCGCACGGGGCGGGGCCGCTGCCGCCGCCGTCACCGGGCATGGCGCTGGGGTTCTCGAAGAGCTCCTTCTCGTACGACGAGCTGGCGCTGGCGACGGGCGGGTTCTCGTCGGCGAACCTGCTGGGGCAGGGCGGGTTCGGGTACGTGTACAGGGGCGTCCTCGCGGGCAGCGGCAAGGAGGTGGCGGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGCGAGCGCGAGTTCCAGGCCGAGGTGGAGATCATCAGCCGTGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCTCATCCCAGCGCCTCCTCGTCTACGAGTTCGTCCCCAACGACACCCTTGAGCACCACCTCCACGGGAAGGGCGTGCCGGTGATGGCCTGGACGACGAGGCTCGCCATCGCGCTCGGCTCAGCCAAGGGCCTCGCGTACCTTCACGAAGATTGCCATCCTAGGATCATCCACCGTGACATCAAGGCGGCCAACATCCTCTTGGACGAGAATTTCGATGCTAAGGTTGCGGATTTCGGGCTTGCAAAGCTAACCACGGACACCAACACGCATGTCTCAACGCGCGTCATGGGGACTTTCGGGTATCTGGCTCCCGAGTACGCGTCGAGCGGCAAGCTGACGGACAAATCGGACGTCTTCTCCTTCGGCGTCATGCTGCTCGAGCTGATCACCGGCCGGCGACCGGTCGACCCAACGAACTACATGGAGGACAGCTTGGTTGACTGGGCGAGGCCCCTCCTGGCGCGCGCCTTGTCGGAGGACGGCAGTTTCGACGAGCTGATCGACCAGCGCCTGGAGAACAAGTTCGACCGGCTGGAGATGGAGCGCATGGCCGCATGCGCTGCCGCCGCCGTCCGCCACTCCGCCAAGCGCCGCCCAAAGATGAAGCAGATTGTCCGTGCGCTGGAGGGCGACGCGTCGCTGGACGACCTGAACGAAGGGGTGAAGCCCGGGCAGAGCATGATGTTCAGCACGGGGTCGGAGTACGACTCCGGCAACTACGCTTCCGACATCAACAGGTTGAGGAAGGTGGCCTTCGAGAGCAGCATCGAGGACAGCAGCGAGTACGGGACCCACTCCAGCGCCGACTCGGGGGAGCCACCCCGGCGGCAACAGCATCGCTAG
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| Protein seq | MKHETSPSNADKILKSLTILSHGYASFLFFFLLDNITIFFLPYFCRGLSRRGAEEGEARRAVPFQNILSWEGWNRLDHRRGEIRLDVRREMDDSPLDNLFDGNGLDSSAGADSSSSTGSPPSSTSSSPPSSQSPPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGGSPPPSHGSPPAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRGKSESNGNRPGPEAAIIAGMVIGFFTFALLLAIVACVCCSKKKKRPPHMHMPYYTDENGKVYYANSMPRWQNSVDQGGGWHAQYSPGQAPPSSEMSGSHGAGPLPPPSPGMALGFSKSSFSYDELALATGGFSSANLLGQGGFGYVYRGVLAGSGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSSQRLLVYEFVPNDTLEHHLHGKGVPVMAWTTRLAIALGSAKGLAYLHEDCHPRIIHRDIKAANILLDENFDAKVADFGLAKLTTDTNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDPTNYMEDSLVDWARPLLARALSEDGSFDELIDQRLENKFDRLEMERMAACAAAAVRHSAKRRPKMKQIVRALEGDASLDDLNEGVKPGQSMMFSTGSEYDSGNYASDINRLRKVAFESSIEDSSEYGTHSSADSGEPPRRQQHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0226901 | RBH | 0.0 | 0.000000 | 7.461071 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12570 | SBH | 0.0 | 0.000000 | 0.630815 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0104800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009470 | SBH | 0.0 | 0.0 | 1.098662 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009320 | SBH | 0.000000 | 0.0 | 6.989616 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009400 | SBH | 0.0 | 0.0 | 9.287399 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009190 | SBH | 0.0 | 0.0 | 3.825280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0110500 | SBH | 0.0287115 | 0.0138545 | 0.434151 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009130 | SBH | 0.017259 | 0.0 | 5.630206 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0110900 | SBH | 0.006526 | 0 | 1.045753 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009200 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009280 | SBH | 0.0 | 0.461339 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009230 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009270 | SBH | 0.0 | 0.000000 | 0.148707 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009230 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009230 | RBH | 0.000000 | 0.113328 | 2.046248 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009110 | RBH | 0.0 | 0.0 | 16.546818 |
