Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0163200 | OGI:03009000 | 5/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:3424904-3426962 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTGAGTTTGATTTGATCAAGTGGGAGGCAACCTTCTTGTTGTTTGTAGGAGACATTCTTCTCCATCACTACTAAAAGTTTTCTTCAGATTGTTTCTTCGTGCACCATCAACTACGGGAAATCTTCTGATTTGGCTTCATGAGATGTCTTCTCCAGAGCAACCAAGAGGTGAGTTCTTTGTTGTCTTCGGTTTTTCCTTATTTCTCACCTGTAATTACTTGCATCTGTACATTCATGCATGCAGGGCAGAACACAAGGATGAGGAAGATGACAGCGAGTGCAAATGGGGATACCGATGAAACTTCAGGCTTAACAACTCCCCGGAGCTGTGAAGTACCGCTGTGTTCTTCATATGAAAATGGTATCACCCGTATCCCTGAAGAAACTCGGTTGCGCGACCCAGAGGCTTACCATCCTAAGGCTGTCTGCATCGGTCCCTACTTCCATTCAGGGAGAAATTCACCAAGCTTCAGGCGAATGGAACAACATAAGCACTGGTGTGTCAACAGATTGCTGGAGCGTAGCAACCACAGCCTTGAACCTTTGGTTCAGGCCTTCCTGCTTAGACTGTCAAAGACAATCAAAACAAAGTCTTTCCAGCAGCTATACGCAAAACCAGTTGATATGACAGAGGAGGGAATCGGCATGATGCTGCTGTTTGACGGCTGCTTCATTCTGCATTTCTTGCTGAGGCATGACCCGAACAAAGGTGCGGAGCATGAATACTGGACAAAGCTGGATGCTGGGCTTCTCGATCATGAGTACGAGACACTCCAGTGGGAGAGACCCTGGGAATGGAGCCTGGTCGCCATCGACATGCTCCTGCTAGAGAACCAAATACCTTTCGTCGCTGTCAGGATCCTGTTTGACATTCTGAAGACGGAGCATGACAAAGCTGTTGACCTGACGGCATGCGCGAGGAACATGTTCAACAAGTACCTGCCAGCTGGAATGTGCACATCAACACGCCCAATCCGCTGCCAGGACGTGCGCTGCCTTCTGCAGCTGCTCTACCGGTCACTCCTTCCAAATCCAAAGCTACACAGTGATCTGATGAAGACACCACCAAAGCCACCAAGAACCGGCATTGATCCTGCCAAGAAGCTTGACACCGATGGGGTTCGCATCACCAGGAGGCAGCAATGGTATTGGTGGCCGTTGAGCCATTTCCAGGAGCCCTTCACCTTCCTTGACATCGTCTTCAGCCATGGCAAGGTGCGGATCCCTCAGCTGGAGGTCAGCGATGCCAGCATCCAGCTGCTGCAGAACCTGATCGCGTTCGAGAAATGCTACCAGGGCACCACGTCCCATGTGGCCAACTACGCTGCCTTCATGGACGCTCTGAATTCGGATCACCATGACACGGAATTGCTGCGTAAGAGGAGTATCTTCGACGTCCAGTTCACCCCTGCCCAGCCTGAGCTCTCCCTGAGAAGGCGGTGCAAGCAGGACGTCGATCCGTCGTCGGAGAACTACCTCAGCCGGATGATGGTGGACGTAGTCCTGTACAAGGAGGCGAGGGCCAGCAGGAAGAAGACGCAGACGCCGATATCGGACACCGCGTTCTTCGCGGTGCTGGCTGTGACGGCGTATGTTTTGCTGGCCTTCTGTTGGTACATCGTTTCTTGATGATACTATGAAAGTGGATGGTGGTTTTCTAACTTTTGCTGTTGTTACGTTCTGTTGGCTGTTAAGCGGGTCCTTTGCTCCTTCACGAAACAAGATAGTACCAATGTTGTGCGAAATTGTGGATTGTCACGCATCTGTTGAAGAGGACTTGATTGGAGGTGGAGGGACAGAGAATCTGCACAGTTTCGCTGTGTTATCTTTGTAAACAGAAAGAGGATGTTTCAGAGATTTCAGTATGGTGTAGCCTTTGCCAATCTGACTCCACAATGGGTCATTTGGGATCAGTAAGGTCCTTTGGGGAAAGCACCAGTGGTGTATGATGGATGGTGTATGACTCCAACCATTAAAATATTTAACCTTGGTTTCTATAGATATTACATACATGTAAACATGCTTTCAATAAAAAAAAAATAGCAAGTTTAAGGTGTG
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| CDS seq | ATGTCTTCTCCAGAGCAACCAAGAGGGCAGAACACAAGGATGAGGAAGATGACAGCGAGTGCAAATGGGGATACCGATGAAACTTCAGGCTTAACAACTCCCCGGAGCTGTGAAGTACCGCTGTGTTCTTCATATGAAAATGGTATCACCCGTATCCCTGAAGAAACTCGGTTGCGCGACCCAGAGGCTTACCATCCTAAGGCTGTCTGCATCGGTCCCTACTTCCATTCAGGGAGAAATTCACCAAGCTTCAGGCGAATGGAACAACATAAGCACTGGTGTGTCAACAGATTGCTGGAGCGTAGCAACCACAGCCTTGAACCTTTGGTTCAGGCCTTCCTGCTTAGACTGTCAAAGACAATCAAAACAAAGTCTTTCCAGCAGCTATACGCAAAACCAGTTGATATGACAGAGGAGGGAATCGGCATGATGCTGCTGTTTGACGGCTGCTTCATTCTGCATTTCTTGCTGAGGCATGACCCGAACAAAGGTGCGGAGCATGAATACTGGACAAAGCTGGATGCTGGGCTTCTCGATCATGAGTACGAGACACTCCAGTGGGAGAGACCCTGGGAATGGAGCCTGGTCGCCATCGACATGCTCCTGCTAGAGAACCAAATACCTTTCGTCGCTGTCAGGATCCTGTTTGACATTCTGAAGACGGAGCATGACAAAGCTGTTGACCTGACGGCATGCGCGAGGAACATGTTCAACAAGTACCTGCCAGCTGGAATGTGCACATCAACACGCCCAATCCGCTGCCAGGACGTGCGCTGCCTTCTGCAGCTGCTCTACCGGTCACTCCTTCCAAATCCAAAGCTACACAGTGATCTGATGAAGACACCACCAAAGCCACCAAGAACCGGCATTGATCCTGCCAAGAAGCTTGACACCGATGGGGTTCGCATCACCAGGAGGCAGCAATGGTATTGGTGGCCGTTGAGCCATTTCCAGGAGCCCTTCACCTTCCTTGACATCGTCTTCAGCCATGGCAAGGTGCGGATCCCTCAGCTGGAGGTCAGCGATGCCAGCATCCAGCTGCTGCAGAACCTGATCGCGTTCGAGAAATGCTACCAGGGCACCACGTCCCATGTGGCCAACTACGCTGCCTTCATGGACGCTCTGAATTCGGATCACCATGACACGGAATTGCTGCGTAAGAGGAGTATCTTCGACGTCCAGTTCACCCCTGCCCAGCCTGAGCTCTCCCTGAGAAGGCGGTGCAAGCAGGACGTCGATCCGTCGTCGGAGAACTACCTCAGCCGGATGATGGTGGACGTAGTCCTGTACAAGGAGGCGAGGGCCAGCAGGAAGAAGACGCAGACGCCGATATCGGACACCGCGTTCTTCGCGGTGCTGGCTGTGACGGCGTATGTTTTGCTGGCCTTCTGTTGGTACATCGTTTCTTGA
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| Protein seq | MSSPEQPRGQNTRMRKMTASANGDTDETSGLTTPRSCEVPLCSSYENGITRIPEETRLRDPEAYHPKAVCIGPYFHSGRNSPSFRRMEQHKHWCVNRLLERSNHSLEPLVQAFLLRLSKTIKTKSFQQLYAKPVDMTEEGIGMMLLFDGCFILHFLLRHDPNKGAEHEYWTKLDAGLLDHEYETLQWERPWEWSLVAIDMLLLENQIPFVAVRILFDILKTEHDKAVDLTACARNMFNKYLPAGMCTSTRPIRCQDVRCLLQLLYRSLLPNPKLHSDLMKTPPKPPRTGIDPAKKLDTDGVRITRRQQWYWWPLSHFQEPFTFLDIVFSHGKVRIPQLEVSDASIQLLQNLIAFEKCYQGTTSHVANYAAFMDALNSDHHDTELLRKRSIFDVQFTPAQPELSLRRRCKQDVDPSSENYLSRMMVDVVLYKEARASRKKTQTPISDTAFFAVLAVTAYVLLAFCWYIVS |
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| Function | UPF0481 protein At3g47200 [UniProtKB/Swiss-Prot:Q9SD53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0163200 | Os03t0163200-01 | Chr03 | 3424904 | 3426962 | + | irgsp1_rep | ||
| CDS seq | ATGTCTTCTCCAGAGCAACCAAGAGGGCAGAACACAAGGATGAGGAAGATGACAGCGAGTGCAAATGGGGATACCGATGAAACTTCAGGCTTAACAACTCCCCGGAGCTGTGAAGTACCGCTGTGTTCTTCATATGAAAATGGTATCACCCGTATCCCTGAAGAAACTCGGTTGCGCGACCCAGAGGCTTACCATCCTAAGGCTGTCTGCATCGGTCCCTACTTCCATTCAGGGAGAAATTCACCAAGCTTCAGGCGAATGGAACAACATAAGCACTGGTGTGTCAACAGATTGCTGGAGCGTAGCAACCACAGCCTTGAACCTTTGGTTCAGGCCTTCCTGCTTAGACTGTCAAAGACAATCAAAACAAAGTCTTTCCAGCAGCTATACGCAAAACCAGTTGATATGACAGAGGAGGGAATCGGCATGATGCTGCTGTTTGACGGCTGCTTCATTCTGCATTTCTTGCTGAGGCATGACCCGAACAAAGGTGCGGAGCATGAATACTGGACAAAGCTGGATGCTGGGCTTCTCGATCATGAGTACGAGACACTCCAGTGGGAGAGACCCTGGGAATGGAGCCTGGTCGCCATCGACATGCTCCTGCTAGAGAACCAAATACCTTTCGTCGCTGTCAGGATCCTGTTTGACATTCTGAAGACGGAGCATGACAAAGCTGTTGACCTGACGGCATGCGCGAGGAACATGTTCAACAAGTACCTGCCAGCTGGAATGTGCACATCAACACGCCCAATCCGCTGCCAGGACGTGCGCTGCCTTCTGCAGCTGCTCTACCGGTCACTCCTTCCAAATCCAAAGCTACACAGTGATCTGATGAAGACACCACCAAAGCCACCAAGAACCGGCATTGATCCTGCCAAGAAGCTTGACACCGATGGGGTTCGCATCACCAGGAGGCAGCAATGGTATTGGTGGCCGTTGAGCCATTTCCAGGAGCCCTTCACCTTCCTTGACATCGTCTTCAGCCATGGCAAGGTGCGGATCCCTCAGCTGGAGGTCAGCGATGCCAGCATCCAGCTGCTGCAGAACCTGATCGCGTTCGAGAAATGCTACCAGGGCACCACGTCCCATGTGGCCAACTACGCTGCCTTCATGGACGCTCTGAATTCGGATCACCATGACACGGAATTGCTGCGTAAGAGGAGTATCTTCGACGTCCAGTTCACCCCTGCCCAGCCTGAGCTCTCCCTGAGAAGGCGGTGCAAGCAGGACGTCGATCCGTCGTCGGAGAACTACCTCAGCCGGATGATGGTGGACGTAGTCCTGTACAAGGAGGCGAGGGCCAGCAGGAAGAAGACGCAGACGCCGATATCGGACACCGCGTTCTTCGCGGTGCTGGCTGTGACGGCGTATGTTTTGCTGGCCTTCTGTTGGTACATCGTTTCTTGA
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| Protein seq | MSSPEQPRGQNTRMRKMTASANGDTDETSGLTTPRSCEVPLCSSYENGITRIPEETRLRDPEAYHPKAVCIGPYFHSGRNSPSFRRMEQHKHWCVNRLLERSNHSLEPLVQAFLLRLSKTIKTKSFQQLYAKPVDMTEEGIGMMLLFDGCFILHFLLRHDPNKGAEHEYWTKLDAGLLDHEYETLQWERPWEWSLVAIDMLLLENQIPFVAVRILFDILKTEHDKAVDLTACARNMFNKYLPAGMCTSTRPIRCQDVRCLLQLLYRSLLPNPKLHSDLMKTPPKPPRTGIDPAKKLDTDGVRITRRQQWYWWPLSHFQEPFTFLDIVFSHGKVRIPQLEVSDASIQLLQNLIAFEKCYQGTTSHVANYAAFMDALNSDHHDTELLRKRSIFDVQFTPAQPELSLRRRCKQDVDPSSENYLSRMMVDVVLYKEARASRKKTQTPISDTAFFAVLAVTAYVLLAFCWYIVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0163200 | RBH | 0.615184 | 0.505044 | 1.187721 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g06730 | RBH | 0.416019 | 0.339684 | 0.305743 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004740 | RBH | 0.403078 | 8.324395 | 2.334637 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004670 | RBH | 0.286721 | 0.484200 | 0.999206 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004710 | RBH | 1.432418 | 3.953419 | 7.404051 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004670 | RBH | 0.182101 | 0.079601 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004720 | SBH | 5.374639 | 2.557258 | 10.634820 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0054400 | SBH | 9.66335 | 8.4460905 | 12.7768285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004610 | RBH | 0.291336 | 0.484671 | 0.676237 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0054600 | RBH | 3.6500425 | 6.9801555 | 3.7089715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004700 | SBH | 0.274014 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004680 | SBH | 0.406854 | 0.258719 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004640 | SBH | 6.100461 | 2.511523 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004700 | SBH | 1.185807 | 0.109181 | 0.290123 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004680 | SBH | 0.718835 | 5.564525 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004670 | SBH | 0.274511 | 1.493252 | 1.116221 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004510 | SBH | 2.704608 | 3.097661 | 3.450017 |
