Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0111700 | OGI:03001820 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:666268-674025 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGTTGTTGTAGAATCTTGTGGATCCACTTGGCAGGGTCTGTGGAGAAGCAGCGCAGGATGACGTCGCTGCCACGGATCGAGAGCTCCGCGACCATGATGTAGATGTGGTCGGATCCTCCGGGAACCACGACGAGGCCAGTGGCGGCGCCTGTCTCGGTGGGGGTGGCGGGGACGGGAAAGGAAATCTTGTAGACTGCGTCCCAGAGAACGTAGGACTTGCTGTCGGCAAGAAACGGATCGGAGCTGGAAAGGAGAAGGATGCCGGAGGGGTCAGCGGCGAGGACGCTGCCTGAGGCGAGGCCGAGCGAAGGGGACACGAGGAGCTGCGAGATGCGCGGGGTTGCGACGAGCGAGAGGGAGATGCCGTCCTTAGGGAGGTCGATGGAGGTGAGCGGTAAGCGGTCCAATACAACCCACTCAGGCGGCGCGGCCGCCGGCGGCGACGCCATCGGGTTTCTTTCTGGGAAGAAAATTTGGGGGTTTTCGTACACGCAAGCGGCCTGGGAAGGGAAAAAAATTTGTTGCATACCGGCTACTCCTGTGCAGACCCGCTCCAGATGGACGACGTGGGGATCGGACGGCTATCTCCGCTCGGCTCCAATGCAGCGCGATATGGTGAGGATGGAGGAGTCTCGCTCATAGGTATCGACTCATTCGGCTCAGATCCTCTTCTCTCATCTTACCGGCGGCCGGCGCCACCTCCGCCGCAAACCCAAAGGCGTCGCCTCCCGACGTGTTCCCCTCCGCGGTCCCATCCACCTCCTGCCTGATCCCGCGCCGCCGTCTCGCTCGTTCGCCGCTGGGACGCGTTTATGCGCGCATCGGGGACGGGGAGGACTGCCATGGTCTGGGACCTCGGCCTCGCGTGTAACACAGCACCTCGACCGACGACCATCGATCAAATGGTGCCCGGCCTTGTCCTTCTTGTCGACCTGTATCTGTATCTGACCAACGGTGAATTGGCAGAATTGCTCATAACATTATTCAGAGTTTGTTCATAATGCTTTATTCAGAGTTGAGAGCTAGATGATTGTTCTGCATGTTGCCTAGATTACTACTCTACCACCAGCTGGCTTCAGATGGTCAAAATGTCATTGATTTTCACAATGACAAAACACAAAATGTTTACTATTGCACATGTCGAAAGTCACTGATCTGTGAACTGTTCTTCACACAGGCAAAAGAGAAAGAGGAAAAAAAGCTCAAGGCAAAGGCAAAGGCAAAGGAGGCAGCTAGGCTCCAGGTTGAAACATAATTATTGATTTTCTATGTTACTGAATGTAAACCAGATAGGTACTTAGTGAGATGCTCGGTGGACATGGATTTTTTCTATTTTCATTCTGATTGGCTTTTCTGTAGGCACAAGCAGCTTCAGATGGTCCTAAAAAAAGTGAGAAGAAGCAAAGGAAGAAAGCTGTTGAGGATGAGAATCCTGAGGATTTCATTGATCCAGACACTCCTCATGGGCAGAAGAAATTTCTTGCATCTCAAATGGCCAAGCAGTATAGCCCAGCTGCTGTTGAGAAATCGTGAGATGCTACATTGTCTTTCTCTATCTTATAACTCAAAGAGTAAGAAAGGCCTAATTGAATTGCAAGCGTTTGTATTTCCCCATTTTAATGCAGATGGTATGCCTGGTGGGAATCGTCAGGATATTTTGGGGCAGATCCTGTGGCTCATACTTTGAAGTTTGCACTAGATATTACGTGAGTTGATTTAGTGAGCTGCTTTTCATGGAATCAATATAGTCTTTTCTACATACAACAGATTATTCCAGATGCGTTGATGTGCTGCCAAGCGGCTAAATTATTTCCTTTCAGGTTTTGCCACCTCCAAATGTCACCGGAGCACTTCATATAGGCCATGCACTTACAGTGGCTATAGAGGTAGTCATCATTATTCTTGCGGAAGCATATATCCATTGTAACGTTGTAGATGTTGGCTAGACATAAGATAATGATTATAACTGCCATGCATTTAATCAATGCAGGATGCCATTATACGCTGGCGAAGGATGTCAGGTTATAATGCTCTGTGGGTTCCAGGAGTCGACCATGCCGGCATTGCTACACAGGTCTGCATCTTGGATTTGGTTCAATGGTTCACCATCATCTGAATTTATCTTATGAAACACTCATCTGCAGATAATATAGTTTAGTTGATATATCTTCGTTGGTATTATTCTGTCATGCTTACTACCCAATCGTTCAGTCACCAATGGGCAAATGCTTCAAAAGATCCATAGGAAATGCTGACCTTTTTGTAAGATTTTTTTTTTGTTTTTCAAAATAAATTGTCAACATATGTTGCTCAATTTTATTCACCCTGTCTTTTTTTTTGCCTCTAAACCAATAATCTTTTTTACCTATTAAATTTATTCTATTTAATCTCACGTTGCTGGATTGCTTAACTCCATTTTTTTTCCTTTCCTTTGTTTTGAAACAGTAAATGCCAATTAATAATCTGTCCTGTATCAGGTTGTAGTGGAGAAGAAGCTTATGCGTGAAAAGAAATTGACGAGGCATGACATAGGGCGTGAAGAATTGGTATCTGAAGTAAGCACTATTTTTTCCTGAACAAAAGTTTATGCCTGTTAACTCCCTATATTCTTTTTATTATAAACGAACAATTTATCACCATTAGCATATGAATATACAAATGGATATAATGTTCTATGTTGTTATGAAAATTTTGGCGAGCACATTGTCATATATGATGCATTGAAAGTCTTGTGTGTTTTATTTGATTAGCTTCATTCCCCATTTATCCTTTCTCTTGTTTATTCTGTTTTATCTATCATCTTCTGGACAGGTTCTCAAATGGAAAGATGAATATGGGGGTACCATATTGAATCAACTACGTAGGCTTGGGGCCTCACTTGATTGGTCCCGCGAGGTACATATCTTATTTTCTGTCGTTAGGAGATAGTATGAGCAATGTATTATTTGTATAGTTTAGTTCTGAATAGCAACTTCCTCTCTACCTTCGCAACAGTGTTTTACAATGGATAAACCAAGATCGAAAGCTGTAACTGAAGCTTTTGTGAGGTTGTACAAACAAGGCCTGATATATAGGTCAGTTTCATCGCCTTATTTTGTTTTTAGAGTTGAACATTTGTTCCTTTTATTGATTGTACAGTTATGTTTTACCTGTTTGCTTCTGTACAGTTGATTTTGGTTTTTGATTGCCATCTTAGTTTTTTTCCCCTGTTATGGATGATATGCTTCTATACACTAGAGGGATTATCGCCTCGTGAATTGGGACTGCACTCTTCGAACAGCAATTTCTGACGTAGAGGTTATTGAGACTTTTAATTGTCTGTTATGCGGATTTGGTTGCACATATAACTAAAATCGATGTCTGTTTGAAATTTCTATTTTTTTCAGGTTGATTATCTAGATATTAAAGAAGAAACCATGTTAAAGGTTCCTGGTTATAATACAACTGTACAATTCGGCGTGTTGATCTCTTTTGCATATCCACTTGAGGAAGGATTGGGTGAGATCATTGTCGCAACAACAAGAATCGAAACAATGCTTGGTGATACAACAATTTCTGTTCACCCTGAGGATAATAGATACAAGCATCTGCATGGTAGGTATGCAATTCATCCCTTCAATGGCCGAAAGCTCAAAATAATCTGCGATGCTGAGTTAGTGGATCCCACTTTCGGTACTGGGGCTGTCAAGGTAGGAGCTGATTCTGAGTACTTGACTATCTCTATTTGATTTCATCTACTTGGATCTTCTGCATAGACTTCAATTATCGTTTGCTGGTCTTTTATGCAGATTACACCTGCCCATGATCCAAATGATTTTGAGGTTGGAAAGCGACGCAGCCTTGAGTTCATCAATATCTTCACAGATGATGGAAAAATAAACAACTATGGAGGTGCACAATTTGAAGGAATGCCAAGATTCACTGCTCGAGTTGCTGTTATTGAGGCACTGAAGGCAAAGGTACTTCTAGATTTGCTTAATCATCCTATCACACCGTCTTGTGATCCATAGTCTCTAAACGTTGTTTCTGGATTACTGCTGGTTTGTTATGGATTTATGCATCATTGCAAAATTGTATCAGAGTGAAAAATACAAAATTGTGAACATACCATGAAGGTTAGTGTAGGCGATAAGGAGGTAGTGCAATATAGCATGAAGGATTCCTACCCTCGACATTCTTCTATCCCTCCTCTCTCATTTTCTATTAATGAGCTTCTTAGCATAGCATTACTTTTCTGAGAAATATGATGTATTGGCTTCTGTCGACATCACTGGTTCTATTAAATCTCGGAGCCCGCATTTGGTTAATGCATTTATGGTTGGGTAATAATGACGTGGAAAGTAGCATTCAATTATTGATGTAATCTGGTACTTTCACCAATTTATTTTCTGTTTGTGCCTTCTTTTTTTCATTTGGTTTGATATGGATTTTGTTCAAGTACTGTTGGAGCTTTATACTTACCCCCTTTTTGTCTGTAATATAAGGGCTTGTACAAGGAGACAAAAAAGAACGAAATGTGTTTGGGTGTTTGTTCAAGAACTAACGACGTGGTGGAGCCTATGATAAAACCCCAATGGTTTGTTAATTGCAATACCATGGCAAAAGCAGGTATTGATGCTGTAAGGTCCAAAAGAATTGAAATTATTCCACAACAGTATGAGCAGGACTGGTATAGGTATGTCTATCACCTTCTCGTTTGTCTCTTGAGAATTATGCCATCTATTGCAAATGACATCATGTCAAAGTAATGAAATCAGAAGAAAATGATCCATTCATTGTTATGTCCTTACAGATGGCTTGCAAATATACGTGATTGGTGTGTTTCAAGGCAGCTTTGGTGGGGACATCGTGTGCCTGCTTGGTATGTTGTACTAGAAGATGATCAAGAGAACATTCTGGGTTCTGATAATGACCGTTGGGTTGTTGCTAGAAACGAAAGCGAAGCAAACCTGGAGGCACATCAAAAGTATCCTGGGAAGAAATTCGAGTTACATCAAGATCCTGATGTGTTGGACACATGGTTTTCATCTGGTCTTTTCCCATTAACCGTACTTGGTTGGCCAGATGATACAGCTGATGTTAAAGCTTTCTACCCTGGTTCAGTGCTGGAAACTGGACATGATATTCTCTTCTTTTGGGTAGCGCGGATGGTGATGATGGGGATGCAACTTGGTGGTGATGTGCCATTTCAGAAGGTAATGACGATTAGCACAACTGTGCTTTCTATGCCATTAAAACTGTATTATACCATTTTAGTAGTGCAACCTATACATTTCATCCATTTTTTGCACACATTAACCAATTGATATCATTATCTTTTATAGCCGTTTGAAACTATGCTTTAATACTACAGTGTAACTCTGATCAAAATTCAGACATGAAGAAATCTATCTTCAATTTTGCTAGCTGTGGATGTTAAAATGGAGTAGTAGTAAACGTCATTATTTTCTGTTCTACCATTTGTTTCAATAGGTCACACTAATTTCATCTGAATGGACTCTAGCTTGTTAATTTTGAACATTTTTTACACTTTTGTCTGCATCCTACTTCGACTGGGCATGATACATTGTTGACTGGGAACTATCCTAATAGATGAACACATTACCTTTTGTCCCCGTCTTTAACATTTATATTTTGAATTATTTAGTAACCTAAGACATGTTTAGCTGCAATTAGAAGTATAACTTACATTGGTAAGTCATGGATTCTTGTTGAACACATATGCTTAAACTGTGGCTCTGCTCTGTTGCTCAGGTTTATTTGCACCCTATGATCCGGGATGCTCATGGATGCAAAATGTCTAAGTCGCTTGGTAATGTCATTGATCCCGTTGATGTGATAAATGGTATTCCACTGGAAGGTCTCCTCAAACGTTTGGAAGAAGGCAATCTGGATCCAAATGAATTGAACATTGCAAGCGATGGGAAGAAGAAAGATTTTCCTGATGGCATTGCTGAATGTGGTACTGATGCCCTCCGTTTTGCACTGGTTTCTTACACTTCTCAGGTTGTAGTCACATCCATTTGTGTTTCTGTCATGTTATGCTTGCAATTCATCTTCTAATGATATCTCTTGTCCACAGTCTGACAAGATAAACCTGGATATCAAACGAGTTGTTGGATATCGGCAATGGTGCAACAAATTATGGAACGCCATTCGTTTTGCAATGGGCAAGCTTGGCGATCATTACACTCCCCCTGCAACTATTTCTGTAACTATAATGCCACCAATATGCAAATGGATATTGTCAGTGCTTAACAAGGCTATTGGCAAATCTGTCACCTCGTTAGAAGCATATAAATTTTCTGATGCTACTTCTGCTATATATTCATGGTGGCAGTACCAACTGTGTGATGTATTTATAGAAGCTATAAAGCCTTACTTCTTCAATGACTCTCAAGAGCTCGAATCAGCAAGAGCTGCCTCTAGAGATGCCTTATGGGTTTGCTTAGATACCGGCTTGCGCTTGCTCCACCCATTCATGCCTTGTGTAACTGAAGAGCTCTGGCAGCGTCTTCCTCAGCCTAAAGATTCTTGTCAGAAAGATTCCATTATGGTATCAGAGTACCCATCCCTTGTTAAGGTAGTAAATTTATCTTAAAAAGAAGACATAATTTGTATTTAGAAATATAATTGAGCCAATATATAATAGCACACTTTTACCAATGAAACATAATCTTCCGTTATGACAGGAATGGGCAGATGATAAACTTGAAAATCAAATAGATATTGCCTTGGATACTGTCAACAAACTAAGATCTCTGAAGCCACCAACTGATACAAACGAGAGGTGCGTGTATAATCATCTATCTTAACTTATGTTATTCCTGTAATGTCCATGATGTCTGGTTACTTGATTGATTGATTGATTCATTTTGTTTGATAGTTAACTTTTTTCTTTTGCTGATTTTTCCATGACCAGACGGCCTGCTTTTGCGCTTTGCCGAGGCCAAGAGATTGCTGCCATTGTTCAATGTTATCAGTCTCTAGTTGTGACTCTTTCTTCTATATCATCTCTAAAGGTGCTGCCTTAAATTTCTGTACAATTATGTGTGCATTCCTTTTTTTCTTTGTATTAGCAAAATTATCTGGATCAAAATTCATACTGAAACCTGGAATGGAGTGTTGACCTGATATTTCAAATTTTATTCAGATCCTGATAGAGAGTGATGAAACACCACCTGACTGTGCAACAGCTGTTGTGAACAAAGTTTATCTGTATACCTCCAACTCCAAGGAGCTCTCAATGCAGAAGTTGAGCTTGAAAAGCTAAGGAAAAAGAGAGAAGAAATTCAAAAGTAAGCGTGCTTATGTTAGCTCAAAATATCTTTAAGGACGTTTTGCCTATGTTTCACTGGTACCCTGCGCTAGCAGTAACACTTTCAATTACTCATGCACGCAGGCTGCAACATGCCCTATCACAGAAAATGGAAGCTTCCGGTTATAAAGAGAAGGCTCCACATAATGTCCAGGAGGACATGAGAAAACTGACCAGTTTTTTGGAACAACTAGAGATTATCAGTGAAGCTGAAAAGAAGCTAGATGCAAAAACTGGCAAAAACTGAGTCAGAAATCCCTGTTGTGATTTTGAAGATACCTTCTCTTTGTGGAAGTTTCATCTAAAATTTTGTACTGTTGCCTTAGTCATATACTAGAATGATCAGATAGCCAGATTTGTGATTTTGCAGCTTGAAGATATATCCACAGCATTATAGTTTTGGTTGTACGACATTGCATTTGAAAATATTCTTACCTAC
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| CDS seq | ATGTTGCCTAGATTACTACTCTACCACCAGCTGGCTTCAGATGGTCAAAATGTCATTGATTTTCACAATGACAAAACACAAAATGTTTACTATTGCACATGTCGAAAGTCACTGATCTGTGAACTGTTCTTCACACAGGCAAAAGAGAAAGAGGAAAAAAAGCTCAAGGCAAAGGCAAAGGCAAAGGAGGCAGCTAGGCTCCAGGCACAAGCAGCTTCAGATGGTCCTAAAAAAAGTGAGAAGAAGCAAAGGAAGAAAGCTGTTGAGGATGAGAATCCTGAGGATTTCATTGATCCAGACACTCCTCATGGGCAGAAGAAATTTCTTGCATCTCAAATGGCCAAGCAGTATAGCCCAGCTGCTGTTGAGAAATCATGGTATGCCTGGTGGGAATCGTCAGGATATTTTGGGGCAGATCCTGTGGCTCATACTTTGAAGTTTGCACTAGATATTACGTTTTGCCACCTCCAAATGTCACCGGAGCACTTCATATAG
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| Protein seq | MLPRLLLYHQLASDGQNVIDFHNDKTQNVYYCTCRKSLICELFFTQAKEKEEKKLKAKAKAKEAARLQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPAAVEKSWYAWWESSGYFGADPVAHTLKFALDITFCHLQMSPEHFI |
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| Function | Valine--tRNA ligase, mitochondrial 1 [UniProtKB/Swiss-Prot:P93736] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0111700 | Os03t0111700-01 | Chr03 | 666268 | 674025 | + | irgsp1_rep | ||
| CDS seq | ATGTTGCCTAGATTACTACTCTACCACCAGCTGGCTTCAGATGGTCAAAATGTCATTGATTTTCACAATGACAAAACACAAAATGTTTACTATTGCACATGTCGAAAGTCACTGATCTGTGAACTGTTCTTCACACAGGCAAAAGAGAAAGAGGAAAAAAAGCTCAAGGCAAAGGCAAAGGCAAAGGAGGCAGCTAGGCTCCAGGCACAAGCAGCTTCAGATGGTCCTAAAAAAAGTGAGAAGAAGCAAAGGAAGAAAGCTGTTGAGGATGAGAATCCTGAGGATTTCATTGATCCAGACACTCCTCATGGGCAGAAGAAATTTCTTGCATCTCAAATGGCCAAGCAGTATAGCCCAGCTGCTGTTGAGAAATCATGGTATGCCTGGTGGGAATCGTCAGGATATTTTGGGGCAGATCCTGTGGCTCATACTTTGAAGTTTGCACTAGATATTACGTTTTGCCACCTCCAAATGTCACCGGAGCACTTCATATAG
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| Protein seq | MLPRLLLYHQLASDGQNVIDFHNDKTQNVYYCTCRKSLICELFFTQAKEKEEKKLKAKAKAKEAARLQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPAAVEKSWYAWWESSGYFGADPVAHTLKFALDITFCHLQMSPEHFI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0111700 | RBH | 1.664110 | 1.154322 | 1.954147 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02100 | SBH | 1.158768 | 0.766980 | 0.466482 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0506200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001040 | SBH | 0.403231 | 2.884071 | 0.930139 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0001020 | SBH | 0.272968 | 0.609150 | 1.887485 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001040 | SBH | 0.249847 | 0.626080 | 4.564605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001030 | SBH | 0.119229 | 0.148204 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001050 | RBH | 3.872097 | 4.698349 | 7.381650 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0011000 | SBH | 2.6209235 | 6.0246735 | 4.778715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0030180 | SBH | 1.025830 | 2.556088 | 3.226293 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0010500 | SBH | 1.862924 | 5.032883 | 6.7547575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001080 | RBH | 0.145238 | 0.084563 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001100 | RBH | 0.283541 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0001050 | RBH | 0.0 | 9.860450 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0030380 | SBH | 1.868177 | 5.413131 | 0.086465 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001070 | RBH | 0.155855 | 1.032902 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G030340 | SBH | 1.648158 | 16.934441 | 7.968836 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0030250 | SBH | 3.811291 | 45.015625 | 22.759327 |
