Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0109400 | OGI:03001480 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:549933-557886 | ||||||||
| Gene Symbol | LF1, HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1 | ||||||||||
| DNA seq | CTCTCTCTCTCTCCCGTGCTGCTCTCCCTTCTCCTCTCCTCAATTACCACGCCGCAGCCGCAGCCCCCCAACCCTAGCTAGTACGGCGGGCGACCTGAGGGGGTAGCTGCCTACCTCTATACCTGCTATCTCCGTTCGATCCGGGTCGGGCTCGTGCTGCTGGGGGCGGGGGCAATCAATCGGCGAGCTCGGTGATCCATGGCCGTGGCTGTGGGGTGGCTGTGAGGGTGCCCCCGGCGGCGCTCCCCTCCGCGCCTGCCGGCGAGGGGGCTCGGACTGAAGGTCGCCACACTCTACCGCCCCACCCATGCTCCCTCCGCGCGCGATCTAAGCTAGGCCTAATCTAGGGTTCCTGATTGCTTTTCCATTTTCGCCCGGACGGACCAAACTACTACTGTCTATCTATCTAGCTTCTTCTGCTGCTTCTCGTGCTGCTCCTGCATATTTTTTTAAAATTTTTATTTCATCTCATTTCCGGGTTACTCTCATTTATCATCTACTCCGTACCACTATTAGCAAGCAACCCATTTTCCCCCCTTTTTTTCTTGAGATTTTTGTGGGCGAATTCGAGTAACCTTTACTCCCCCCATTCTAGGAAGCGGTTTCTTTTAGCATGGCTTTGTTTTTTTCTTTTCCTCTCCCGCTTTCTTAGTTAATCAACTTTACCATATCTGTTGCGTGCACTTCAATCCCTGTCATTTGTATCCTTCCCCTAGATTTTGATGCTCAAACGATTGTTTTCACCAAATGCTGAGTCAAAAGAACTCTCCTTTTCTTTTTTCCCCCAGGGATCTAGGCGAGCTGAAAATTGAAGTGCAGGCAAGGAGATAAGAGCAGCGTCCAAATTGTGAGTACTTCATTAGCAGGAGGTAGTGGTTGTGCTTGCTTGGCTCCTTTGCAATTTGGCTTTGGCGAGGTAGCAATGGCTGCGGCAGTGGCAATGCGAGGGAGTAGCAGTGATGGAGGTGGCTATGATAAGGTTTCCGGGATGGACTCCGGTAAATATGTGCGCTACACGCCTGAGCAGGTGGAGGCGCTTGAGCGGGTGTACGCCGATTGCCCCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTAATGATAATAGAATTGAATCTTTCTACGTTTGTTCTCTGTGACAAAAACTTGTTATGGCAGTTTTCCCTGATTGTTTCATCTGTCACCTGAAATAACATTTCGTTAGTTTCCTTCTGGGGAGGCTATGGTTCTAATATGCTGCGTTGTTGTTGTGATGATGAGCGGTATTTTGATATGAGGGGAGCTGCAATGCCAATTGTTTATCATTTCATTTGTTTGCGCACCAGCAAAATGTAGTATAATTACTTTAGCTGACGGCTCTGCATGTATATGATTTTTTCGTTTTTCATGTTCGCTGAAGTGGATACTTGTGCTTGTGTTGCTCTAGGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGGAAATTGACGGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATGTAAGCTCTTGATGTGCTGGTGCTGATGTTGTCCCCCATGCATAAACATGTTCTCACTGAAATGCTATCTATTCTTTGTGCATTTTGTTATACGCATGGCATGTCCGGGGATGTGTTGTTCTGTACTGTATATTGTAGATTAGTATAACTTTAAAATTTGATGTATGTGTAGCTATACCAGCTGGGGCCATATGCGTCAGTTCCTTTAGAATTGATATATGAATTAATCCTCAGAATGTCCATGAGATCGCTAGATTTCACTGATAACACCACTTGCTTGGGTGCAGACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGGTAAGTAAATAGTTCTGAGTGACTCAGGTAGAATTATTGTTGGATGGACTTGCTCTTTCGATATCATGCTATCTTAACTGCCTTTTATCTTGTTCTAGGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTACTGGTACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAGGTTCCATGCTAGCACTGTTTGTTTTTTTGTTCTGTGATTTGTGCTAAGAGGTTTTTACTTGAAGTGCTTACTACCCTTTTGTTTTCATGATGTAAGCCTGGTCCGGATTCGGTTGGTATTGTGGCCATTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAGTAAGTGTTGTAGCTATTTGGGTACATGGGTTTGGTATTTTTATGTTACCTCAGTATTCCCTGTCTGTATGTTTTCTGAAGCATCTATTTTGGGTGATAGCAAGCCTATCCACCAGTCACTTAGTTTTCTTTGTGTGCAAATGGTTAGAAACCTACTACCTCCATCCCAAAATATAGCCAAAAGTTGCTATATCAAAAATCCTATCAGAAGTGCCTCCTGAACACATTGCTGCCGAGTGTGGAATTAAGACACACTGTAATTCACTTTAATAAATACTAAACTTTGAAGATGTCACTTTAGAGGTCTAATGATTTCATGTCTGCCAACTGTTATCATCAAATTTAATCGTGAAGATAAGCAGATATCTTGCTTTTTTTGTTACTTTATTCAGGAGATTTTGTGTCTCATAGAACTTTGTTACGTAGGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAACTTGTCTACACACAGGTGAACACTGTTTCATTTTACATTGTATAATGGTATATCCTCAGTCTTCTCTATCAATGCATGTGCTTCATGCCATGAACATTATTACTTGTTTTTGCTTACAGTTGTATGCTCCAACAACTTTAGTTCCTGCACGAGATTTTTGGACGTTACGGTACACAACCACAATGGAAGATGGCAGTCTTGTGGTATGTATGAACATGAACACTGTTTTCACCCCACAATGAGTCTCAATGTGATGTTACCCTTGCTAATATTCCTCCATCTCCAAGGTCTGTGAGAGATCTTTAAGTGGTTCAGGGGGCGGTCCAAGTGCTGCCTCTGCTCAGCAATATGTGAGAGCGGAAATGCTTCCAAGTGGATACCTGGTTCGCCCATGTGAAGGTGGGGGATCAATTGTGCACATAGTGGACCATCTGGATCTTGAGGTATTTTTCACACTTTTGTACAGTTGAACCATGTTTTTTGTCCTTTGATGTAGGACCATTTTTGTATCCTGTCAAACTAATAATACAATTTGGTTTAATCTTTCAGGCATGGAGTGTTCCTGAGGTGCTTCGGCCACTCTATGAATCTTCAAGGGTAGTCGCTCAGAAAATGACTACTGCGGTAAGCTGTCGTGAAATGATATTCAGCTCAAATTTCATTGATGTGATTACAAGTTCATCATTTCAAGTGAAACTTGTTTTTAATGAACTCTTCAAGTTTCATAACATTGGATTTTTTTTTAGAAAAAATAAAATAAAAATCCAATATTATGAAACTTGAAGAGTTCAAGCTAATGATAAAGTTTGTGTTTTGGATAAAGCTTATAATATTGGATATGTGGTGAAAATGATTTATATGGGTTGGTACAACTAATGATAAAATTTGCCTTTTGGATATGTTGAACAGTTCATTTTCTGCAATCTACTTTATACTAACCTTTTATTGTCTATCCTATATATCAAGGCACTCCGGCACATCAGACAAATTGCTCAAGAAACAAGTGGGGAAGTGGTGTATGCCTTGGGGAGGCAACCAGCAGTGCTACGGACTTTTAGTCAAAGGCTGAGCAGGTGATTTTTTTATAAATTATTACTCAGCAATTAATATTTTTTTCACCTGTTTAATCTAACACCAATATTATGCTTTTCTTAGAGGCTTTAACGATGCCATTAGTGGTTTCAATGATGATGGGTGGTCTATAATGGGCGGAGACGGTGTTGAAGATGTAGTTATTGCTTGCAACTCAACTAAGAAAATTAGGAGTAACAGCAATGCTGGCATCGCCTTTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGGTAAGGGTAATCATTATCAGCTCATTAGGGTGCAGATGACCCCTCTGTATGTAGCGTCATTTTCCAAGGAAGGGAAAAAAAAACTTTTTTAGTGATTCAACATATGCAAGCACATAAATAAATTGCTCGGCTGTATTAACATTTGATAGTGAGATCCTAATGAGATTTTTGATGTTTTGCCTGGTCCTACACCTGATGATAATTTGTTTGATTTATTTCATTACTTTCTTTTTTGCGGAGAAACTTATTTCATAAAACTGCTGTCATCGCTGGTGTGAATATAAAAGCAGTGTCACAAAAGTTTTTTCCTCAGAGACATTGAACACACAGAATGAGTTCTTTGGAACTAGATTTCCATGTTCAAAACTTGTAGCTGTTAAATCATGTTAATCCATACGTCTTCTTTTCCTTCTTTGGTATTTCAGAGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAATGGGCCGATTACAATATTGATGCATATTTGGCTTCAACTCTGAAAACAAGTGCATGTTCACTTACTGGGTTGCGACCCATGAGATTTTCTGGGAGCCAAATCATCATTCCACTTGCTCACACAGTTGAGAATGAGGAGGTATATTTTCCTGAATATGGGGAAAGTCTGTTTTTTGTGCGCTTGTTGCTGTTGAACTGATTTGAGTAATGGTTATAGCAAACTACTTATTTTCATTCTTGCTGATCTGTTTACATTGTCATAGTGGATAGTGACTATCTAGTTAATTCCATTGTCGGACATAGTTTTGTTATTATTGATTTATTTTCATTAACTTGAAAAAAAAACGAACAGATTCTTGAAGTTGTTCGCCTTGAGGGTCAACCTCTTACTCATGATGAAGCTCTTCTTTCAAGGGATATCCACCTGCTTCAGGTAAGACACTAAATGCCATTGCTATGTTTTTTGTCTGTATATGTACTGTGTTGCTTCTCAATTGAGAAAACTAGTAGCTTTTAATACATGTAATTTCTTGCTTAATATGTTGATCATTGTATCTATTCGTGAGCATCTTTGGCTCTATTTCATCTTATCAAATTATTGTAGAGTTAAATATGCTGTGTAACAACTACCAACCCATAAGCCTATCTTTATCCGGGCATATTAAGTTTGTTGCTACACCCTTTTTTCCCCCTTCGAAGTACAGTCAAAGATGCAAAGCTTTTTATGAGGCTTGTAAATATTCCAGTTTGCTAATATACCCTTATCTTTTGCAGCTCTGCACTGGAATAGACGAGAAGTCTGTGGGATCCTCCTTTCAGCTTGTGTTTGCACCGATTGATGATTTCCCAGATGAAACTCCATTGATTTCTTCTGGCTTCCGTGTTATACCACTTGATATGAAAACAGTTAAGTGCTGCCAAATTCCAAATTACATTATCCATTACCCTTTTGACTGTTCCCTAGGTCCATATGTGCTTTATTTGCTGTTGCATTAATCTGTGATGAGTCGTGAATGTCTTTTAGCTTTTCTAGGAACCTCAGTTTTATTCATTTGTTCAGTGAGTTAACCCTGGCCAATTTTAACTCTTCATAAACAATTGTTTTGGTTGTTCTAAGACAAATAATCTCTTGGAAATGTTTCATTTATTCTCCCCTCTAGTCCGCTTTAAATGTTCCAGCTCTGTCCACAGAGACCCCAAAAAAAAGCTATTTTGTAAACTCCCATTAAATTGAGAAAAAAAACTGTTAAATTGGTTATTTGCATCTTGATTGTATCACCAGTTAGAACTAATAGAGGCATTTGGTTTCAAATATTCCCTTGGAAAAATAAAGCAAGTATGTATGAACCAAGCTTGCTAAAATGTTTATCCTTTTTGAACCAGAGGTAGTACTATATTTTTGGTCGGCTGCCACTAAATTTTTAGGCTCTGTGCCCAAAAGTTTAACCGTCACATTTCATGCAGGATGGTGCATCCTCTGGTAGGACATTAGATTTGGCATCTAGTCTTGAAGTAGGTTCAGCAACAGCTCAAGCCTCCGGAGATGCATCTGCAGATGATTGTAACTTGCGATCTGTTCTGACGATCGCTTTTCAATTCCCTTACGAGTTGCATCTCCAAGACAGTGTTGCAGCTATGGCTCGCCAATATGTCCGTAGCATTGTTTCTGCTGTGCAAAGAGTGTCAATGGCTATCTCTCCCTCTCAAACTGGTCTAAATGCCGGACAGAGGATAATCTCTGGTTTCCCTGAAGCAGCAACCCTTGCTCGATGGGTTTGCCAGAGCTACCAGTAAGTGTACTCGTAGTTTCTTCCTGTGCAGTAGTGATGATATTTAATAAGAATAAATTTGATAGTTTTCCATGTTGGTTGCAAGCTGACAAAATATTATTATGCCGTCGCTCAGTTACCATCTAGGGGTAGAGTTACTTAGTCAATCAGATGGAGATGCAGAACAATTGTTGAAGATGCTATGGCATTACCAAGATGCTATTTTGTGCTGCTCATTCAAGGTATCTGATGAATTCAACTCGATCAATGTTCCATCATTTGATCTAATCTCATTTAGTCTATTAAGTACTATTACAGACCACTCGATCAATGTTTACCCATGTATTACAGACCACTCGATCAATGTTTACCCATGTACTCTAAAACTTATCGCTTGTCCAGCTGACCTACAATCTTTTCATGCATTTTTCAATCTAACAAAAACTGGCTCTGTTAATAATAACCTAATAGTTAGAAAGAACTGGCTCTGTTAATAATGACCTAGTAATAGTTAGTACTTAGTACAGACCTAACGAGTGCTTAGACCCTCAAACGTGTTTTCAACAGGGTGATTTTGCTATATTTTTCCCTTTGAGTAAATGCTCTCAATTTTTTGTAAGGTTTACACTTTTGACACTAATGCGATCATCGGACCACAATATTTGCTATCTTGTATGACAGAAATGTTTTGGTTTCTTTCAGGAAAAACCGGTGTTTACATTTGCCAACAAAGCAGGACTGGACATGCTAGAAACTTCCCTTGTCGCCTTACAGGACCTCACATTGGACAGGATCTTTGATGAGCCTGGAAAAGAAGCATTGTTCTCAAACATTCCCAAATTGATGGAGCAGGTAGAAACTCCTTTTCGCTTAACTCACACCCTTAAGTGCATCATATTTCAGAAATCGCTGAGTTGAAATAAATTAAAATTATGTTACATTGCTTACCATTTTTTTCCCTGTTTTGTGTTTAGGGCCATGTCTACCTGCCATCAGGCGTGTGCATGTCAGGAATGGGTCGGCATGTTTCTTTCGATCAGGCCGTGGCTTGGAAAGTGCTTGCCGAGGATAGCAATGTTCACTGCCTGGCCTTCTGTTTCGTCAACTGGTCCTTTGTGTGACCATCCCACATCCACTGCGAAGTGAAGATTCATTTTTGCTTGTTCAAGACTGTTTTGCACTAGATCTAGACCTGAGAATCTAGTAGTATTTGCGAAATTTCTCGCTTATGTAAATGTAATCTCGCTCCCATTCCATCAAGTACCCAAGTACAAGGCAGTGGCCAAGTGGTTTTAGTTGTAGGGGGATCGGAGCAATCCTGACGGTTGGGTACTTGGGTTCCTTCCAGCAATGTAAAATCGGATCCTGTAGGGCGTCGAAAACTGCATTGGCAAGATTCTTCGAAATGCAGACCAAATTTAGCTAGTACATCGTAACTTTGGC
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| CDS seq | ATGGCTGCGGCAGTGGCAATGCGAGGGAGTAGCAGTGATGGAGGTGGCTATGATAAGGTTTCCGGGATGGACTCCGGTAAATATGTGCGCTACACGCCTGAGCAGGTGGAGGCGCTTGAGCGGGTGTACGCCGATTGCCCCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGGAAATTGACGGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTACTGGTACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGTATTGTGGCCATTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAACTTGTCTACACACAGTTGTATGCTCCAACAACTTTAGTTCCTGCACGAGATTTTTGGACGTTACGGTACACAACCACAATGGAAGATGGCAGTCTTGTGGTCTGTGAGAGATCTTTAAGTGGTTCAGGGGGCGGTCCAAGTGCTGCCTCTGCTCAGCAATATGTGAGAGCGGAAATGCTTCCAAGTGGATACCTGGTTCGCCCATGTGAAGGTGGGGGATCAATTGTGCACATAGTGGACCATCTGGATCTTGAGGCATGGAGTGTTCCTGAGGTGCTTCGGCCACTCTATGAATCTTCAAGGGTAGTCGCTCAGAAAATGACTACTGCGGCACTCCGGCACATCAGACAAATTGCTCAAGAAACAAGTGGGGAAGTGGTGTATGCCTTGGGGAGGCAACCAGCAGTGCTACGGACTTTTAGTCAAAGGCTGAGCAGAGGCTTTAACGATGCCATTAGTGGTTTCAATGATGATGGGTGGTCTATAATGGGCGGAGACGGTGTTGAAGATGTAGTTATTGCTTGCAACTCAACTAAGAAAATTAGGAGTAACAGCAATGCTGGCATCGCCTTTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGAGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAATGGGCCGATTACAATATTGATGCATATTTGGCTTCAACTCTGAAAACAAGTGCATGTTCACTTACTGGGTTGCGACCCATGAGATTTTCTGGGAGCCAAATCATCATTCCACTTGCTCACACAGTTGAGAATGAGGAGATTCTTGAAGTTGTTCGCCTTGAGGGTCAACCTCTTACTCATGATGAAGCTCTTCTTTCAAGGGATATCCACCTGCTTCAGCTCTGCACTGGAATAGACGAGAAGTCTGTGGGATCCTCCTTTCAGCTTGTGTTTGCACCGATTGATGATTTCCCAGATGAAACTCCATTGATTTCTTCTGGCTTCCGTGTTATACCACTTGATATGAAAACAGATGGTGCATCCTCTGGTAGGACATTAGATTTGGCATCTAGTCTTGAAGTAGGTTCAGCAACAGCTCAAGCCTCCGGAGATGCATCTGCAGATGATTGTAACTTGCGATCTGTTCTGACGATCGCTTTTCAATTCCCTTACGAGTTGCATCTCCAAGACAGTGTTGCAGCTATGGCTCGCCAATATGTCCGTAGCATTGTTTCTGCTGTGCAAAGAGTGTCAATGGCTATCTCTCCCTCTCAAACTGGTCTAAATGCCGGACAGAGGATAATCTCTGGTTTCCCTGAAGCAGCAACCCTTGCTCGATGGGTTTGCCAGAGCTACCATTACCATCTAGGGGTAGAGTTACTTAGTCAATCAGATGGAGATGCAGAACAATTGTTGAAGATGCTATGGCATTACCAAGATGCTATTTTGTGCTGCTCATTCAAGGAAAAACCGGTGTTTACATTTGCCAACAAAGCAGGACTGGACATGCTAGAAACTTCCCTTGTCGCCTTACAGGACCTCACATTGGACAGGATCTTTGATGAGCCTGGAAAAGAAGCATTGTTCTCAAACATTCCCAAATTGATGGAGCAGGGCCATGTCTACCTGCCATCAGGCGTGTGCATGTCAGGAATGGGTCGGCATGTTTCTTTCGATCAGGCCGTGGCTTGGAAAGTGCTTGCCGAGGATAGCAATGTTCACTGCCTGGCCTTCTGTTTCGTCAACTGGTCCTTTGTGTGA
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| Protein seq | MAAAVAMRGSSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDCRNLEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSAASAQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSIMGGDGVEDVVIACNSTKKIRSNSNAGIAFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDDFPDETPLISSGFRVIPLDMKTDGASSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVELLSQSDGDAEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEALFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCFVNWSFV |
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| Function | Homeobox-leucine zipper protein HOX10 [UniProtKB/Swiss-Prot:Q6TAQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0109400 | Os03t0109400-01 | Chr03 | 549933 | 552143 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGCGGCAGTGGCAATGCGAGGGAGTAGCAGTGATGGAGGTGGCTATGATAAGGTTTCCGGGATGGACTCCGGTAAATATGTGCGCTACACGCCTGAGCAGGTGGAGGCGCTTGAGCGGGTGTACGCCGATTGCCCCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGGAAATTGACGGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTACTGGTACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAG
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| Protein seq | MAAAVAMRGSSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKATGTAIDWVQMPGMK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0109400 | Os03t0109400-02 | Chr03 | 549939 | 557886 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGCGGCAGTGGCAATGCGAGGGAGTAGCAGTGATGGAGGTGGCTATGATAAGGTTTCCGGGATGGACTCCGGTAAATATGTGCGCTACACGCCTGAGCAGGTGGAGGCGCTTGAGCGGGTGTACGCCGATTGCCCCAAGCCAACCTCCTCCCGCAGGCAGCAACTGCTGCGTGAGTGCCCCATACTTGCTAACATTGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACAGAAGGTGCCGGGATAAGCAGCGGAAGGAGTCTTCACGGCTTCAGGCTGTCAACAGGAAATTGACGGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTACTGGTACAGCTATTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGTATTGTGGCCATTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAACTTGTCTACACACAGTTGTATGCTCCAACAACTTTAGTTCCTGCACGAGATTTTTGGACGTTACGGTACACAACCACAATGGAAGATGGCAGTCTTGTGGTCTGTGAGAGATCTTTAAGTGGTTCAGGGGGCGGTCCAAGTGCTGCCTCTGCTCAGCAATATGTGAGAGCGGAAATGCTTCCAAGTGGATACCTGGTTCGCCCATGTGAAGGTGGGGGATCAATTGTGCACATAGTGGACCATCTGGATCTTGAGGCATGGAGTGTTCCTGAGGTGCTTCGGCCACTCTATGAATCTTCAAGGGTAGTCGCTCAGAAAATGACTACTGCGGCACTCCGGCACATCAGACAAATTGCTCAAGAAACAAGTGGGGAAGTGGTGTATGCCTTGGGGAGGCAACCAGCAGTGCTACGGACTTTTAGTCAAAGGCTGAGCAGAGGCTTTAACGATGCCATTAGTGGTTTCAATGATGATGGGTGGTCTATAATGGGCGGAGACGGTGTTGAAGATGTAGTTATTGCTTGCAACTCAACTAAGAAAATTAGGAGTAACAGCAATGCTGGCATCGCCTTTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGAGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAATGGGCCGATTACAATATTGATGCATATTTGGCTTCAACTCTGAAAACAAGTGCATGTTCACTTACTGGGTTGCGACCCATGAGATTTTCTGGGAGCCAAATCATCATTCCACTTGCTCACACAGTTGAGAATGAGGAGATTCTTGAAGTTGTTCGCCTTGAGGGTCAACCTCTTACTCATGATGAAGCTCTTCTTTCAAGGGATATCCACCTGCTTCAGCTCTGCACTGGAATAGACGAGAAGTCTGTGGGATCCTCCTTTCAGCTTGTGTTTGCACCGATTGATGATTTCCCAGATGAAACTCCATTGATTTCTTCTGGCTTCCGTGTTATACCACTTGATATGAAAACAGATGGTGCATCCTCTGGTAGGACATTAGATTTGGCATCTAGTCTTGAAGTAGGTTCAGCAACAGCTCAAGCCTCCGGAGATGCATCTGCAGATGATTGTAACTTGCGATCTGTTCTGACGATCGCTTTTCAATTCCCTTACGAGTTGCATCTCCAAGACAGTGTTGCAGCTATGGCTCGCCAATATGTCCGTAGCATTGTTTCTGCTGTGCAAAGAGTGTCAATGGCTATCTCTCCCTCTCAAACTGGTCTAAATGCCGGACAGAGGATAATCTCTGGTTTCCCTGAAGCAGCAACCCTTGCTCGATGGGTTTGCCAGAGCTACCATTACCATCTAGGGGTAGAGTTACTTAGTCAATCAGATGGAGATGCAGAACAATTGTTGAAGATGCTATGGCATTACCAAGATGCTATTTTGTGCTGCTCATTCAAGGAAAAACCGGTGTTTACATTTGCCAACAAAGCAGGACTGGACATGCTAGAAACTTCCCTTGTCGCCTTACAGGACCTCACATTGGACAGGATCTTTGATGAGCCTGGAAAAGAAGCATTGTTCTCAAACATTCCCAAATTGATGGAGCAGGGCCATGTCTACCTGCCATCAGGCGTGTGCATGTCAGGAATGGGTCGGCATGTTTCTTTCGATCAGGCCGTGGCTTGGAAAGTGCTTGCCGAGGATAGCAATGTTCACTGCCTGGCCTTCTGTTTCGTCAACTGGTCCTTTGTGTGA
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| Protein seq | MAAAVAMRGSSSDGGGYDKVSGMDSGKYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDCRNLEVFTMIPAGNGGTVELVYTQLYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSAASAQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSIMGGDGVEDVVIACNSTKKIRSNSNAGIAFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDDFPDETPLISSGFRVIPLDMKTDGASSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVELLSQSDGDAEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEALFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCFVNWSFV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0109400 | Os03t0109400-03 | Chr03 | 554064 | 557870 | + | irgsp1_rep | ||
| CDS seq | ATGGGCGGAGACGGTGTTGAAGATGTAGTTATTGCTTGCAACTCAACTAAGAAAATTAGGAGTAACAGCAATGCTGGCATCGCCTTTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGAGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAATGGGCCGATTACAATATTGATGCATATTTGGCTTCAACTCTGAAAACAAGTGCATGTTCACTTACTGGGTTGCGACCCATGAGATTTTCTGGGAGCCAAATCATCATTCCACTTGCTCACACAGTTGAGAATGAGGAGATTCTTGAAGTTGTTCGCCTTGAGGGTCAACCTCTTACTCATGATGAAGCTCTTCTTTCAAGGGATATCCACCTGCTTCAGCTCTGCACTGGAATAGACGAGAAGTCTGTGGGATCCTCCTTTCAGCTTGTGTTTGCACCGATTGATGATTTCCCAGATGAAACTCCATTGATTTCTTCTGGCTTCCGTGTTATACCACTTGATATGAAAACAGATGGTGCATCCTCTGGTAGGACATTAGATTTGGCATCTAGTCTTGAAGTAGGTTCAGCAACAGCTCAAGCCTCCGGAGATGCATCTGCAGATGATTGTAACTTGCGATCTGTTCTGACGATCGCTTTTCAATTCCCTTACGAGTTGCATCTCCAAGACAGTGTTGCAGCTATGGCTCGCCAATATGTCCGTAGCATTGTTTCTGCTGTGCAAAGAGTGTCAATGGCTATCTCTCCCTCTCAAACTGGTCTAAATGCCGGACAGAGGATAATCTCTGGTTTCCCTGAAGCAGCAACCCTTGCTCGATGGGTTTGCCAGAGCTACCATTACCATCTAGGGGTAGAGTTACTTAGTCAATCAGATGGAGATGCAGAACAATTGTTGAAGATGCTATGGCATTACCAAGATGCTATTTTGTGCTGCTCATTCAAGGAAAAACCGGTGTTTACATTTGCCAACAAAGCAGGACTGGACATGCTAGAAACTTCCCTTGTCGCCTTACAGGACCTCACATTGGACAGGATCTTTGATGAGCCTGGAAAAGAAGCATTGTTCTCAAACATTCCCAAATTGATGGAGCAGGGCCATGTCTACCTGCCATCAGGCGTGTGCATGTCAGGAATGGGTCGGCATGTTTCTTTCGATCAGGCCGTGGCTTGGAAAGTGCTTGCCGAGGATAGCAATGTTCACTGCCTGGCCTTCTGTTTCGTCAACTGGTCCTTTGTGTGA
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| Protein seq | MGGDGVEDVVIACNSTKKIRSNSNAGIAFGAPGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLAHTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPIDDFPDETPLISSGFRVIPLDMKTDGASSGRTLDLASSLEVGSATAQASGDASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIVSAVQRVSMAISPSQTGLNAGQRIISGFPEAATLARWVCQSYHYHLGVELLSQSDGDAEQLLKMLWHYQDAILCCSFKEKPVFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEALFSNIPKLMEQGHVYLPSGVCMSGMGRHVSFDQAVAWKVLAEDSNVHCLAFCFVNWSFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0109400 | RBH | 1.629800 | 1.775982 | 4.665074 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g01890 | RBH | 1.080792 | 1.147647 | 0.885919 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0480200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0000840 | RBH | 0.473691 | 9.640721 | 7.056610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0000820 | RBH | 0.371713 | 1.590501 | 3.671820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0000840 | RBH | 1.023096 | 9.760931 | 13.449853 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0000830 | RBH | 0.110174 | 0.249366 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0000830 | RBH | 2.109156 | 17.560677 | 21.310146 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0008800 | RBH | 10.380359 | 25.484417 | 34.9394225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0000830 | RBH | 0.243920 | 0.624087 | 1.809416 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0008500 | RBH | 11.9337625 | 26.9376755 | 51.0260125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0000860 | RBH | 0.167049 | 0.171704 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0000880 | RBH | 0.352703 | 11.481915 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0000830 | RBH | 3.090633 | 26.132891 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0000840 | RBH | 0.640741 | 1.149953 | 1.006261 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0000850 | RBH | 0.164266 | 7.328955 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G000840 | RBH | 0.167249 | 2.606550 | 6.565806 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0000750 | RBH | 0.825568 | 10.926953 | 9.210412 |
