Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0732600 | OGI:02086540 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:30539853-30541113 | ||||||||
| Gene Symbol | MYB20, OsMYB20, MYB20/43 | ||||||||||
| DNA seq | ATCACAAAACACACCAAACCATTTCTTCTCTTCTTCATTGTCAACAAATATGCATGCTTGTCATGGACGAATTCAATATAGGAAAACAAAGAAGAGTGAAAGAAGAAGATATGAATCTCAACTTCACGGCCAATCTAATTCTACTCACGGACGTAAACTCTCCTGTCAGGATCAGGATCACATCCACACATCTTGATCAAAGCCAACGTCAGAGCATTGGTCGAACAACATATCGACGCCAATGGCGCTGCAGCCGCCATCGTCGCCGCAGGCAGACAATAAGCCAGCCCAGTCAATGTCAAGAATGGCATCCACCTCGAAGAGGCCGGGCCAGTCCACGTCCGCGCCGGGTGTCGCGGCGGAGGCCGAGGCGGACGAGGAGCATGACGACGACACGGCGGAGGCGGATGAAGCAGCGCAAGCGACGCCCTGTGGCTGGGCGCTCGTCGGCGTCTCCTCCTCCTCCTCCTCCTTGTCGTCGGCACCGGTGCCGCCGGAGACGGACGGTTCATGCTGCTGCTGCTGCTGCTTCAGGGGATCAGGCTGAGCGAGTGACATCACCGGCCGGTGAGTGACGGGATCAAGGCCCATCTTCTTGAGCTTCTTCTTGATGTGGGTGTTCCAGTGGTTCTTGATCTCGTTGTCCGTCCTCCCGGGGAGCCGTGCCGCAATCTTGGACCATCTGTACGCACGCACGCGACGCACAAAAACACCATGAGATTTTGGATCGAGTGGCGGCATGCATGCGGCAGCATCTGATTTTGGAGGCATTGTCACCTGTTGCCGAGCTGCTCGTGGAGGTCAATGACCAGCTTCTCCTCCTCTTCGGAAAGGAGGCCCCTCTTGAGGTCGGGCCGCAGGTAGTTCGTCCACCTCAGCCGGCAGCTCTTCCCACACCTGAGCAGCCCTGCGAGTGAAACATAGCAAAAACCCGAAGGCACAGTCACTCCCATTGCAGTTGCAGGACGATCTGCATGTTAACGCGAATCCTTTTCCCTTTCGCGCATCAGATGGAAACACATGGTCATGCATGCTCATGCACCTGCGAGCTTGGGGACGAGCCTCCAGCAGCAGTGGCCATTGGAGAGGAGGAAGGTGACCAGCTTCTGGTCCTCGTCGGCCGTCCATGGCCCCTTCTTCAGGCCAACCTTCTCGCAGCACGGCTGCCTGCCCATCACACGCTGATCCCTGATTTGCGAGGCTATCTGTATCTCACGAGAGGGATGAACTGAGCCTGATGAGCTCACCCGAGTCTTAATTT
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| CDS seq | ATGGGCAGGCAGCCGTGCTGCGAGAAGGTTGGCCTGAAGAAGGGGCCATGGACGGCCGACGAGGACCAGAAGCTGGTCACCTTCCTCCTCTCCAATGGCCACTGCTGCTGGAGGCTCGTCCCCAAGCTCGCAGGGCTGCTCAGGTGTGGGAAGAGCTGCCGGCTGAGGTGGACGAACTACCTGCGGCCCGACCTCAAGAGGGGCCTCCTTTCCGAAGAGGAGGAGAAGCTGGTCATTGACCTCCACGAGCAGCTCGGCAACAGATGGTCCAAGATTGCGGCACGGCTCCCCGGGAGGACGGACAACGAGATCAAGAACCACTGGAACACCCACATCAAGAAGAAGCTCAAGAAGATGGGCCTTGATCCCGTCACTCACCGGCCGGTGATGTCACTCGCTCAGCCTGATCCCCTGAAGCAGCAGCAGCAGCAGCATGAACCGTCCGTCTCCGGCGGCACCGGTGCCGACGACAAGGAGGAGGAGGAGGAGGAGACGCCGACGAGCGCCCAGCCACAGGGCGTCGCTTGCGCTGCTTCATCCGCCTCCGCCGTGTCGTCGTCATGCTCCTCGTCCGCCTCGGCCTCCGCCGCGACACCCGGCGCGGACGTGGACTGGCCCGGCCTCTTCGAGGTGGATGCCATTCTTGACATTGACTGGGCTGGCTTATTGTCTGCCTGCGGCGACGATGGCGGCTGCAGCGCCATTGGCGTCGATATGTTGTTCGACCAATGCTCTGACGTTGGCTTTGATCAAGATGTGTGGATGTGA
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| Protein seq | MGRQPCCEKVGLKKGPWTADEDQKLVTFLLSNGHCCWRLVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEEEEKLVIDLHEQLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLKKMGLDPVTHRPVMSLAQPDPLKQQQQQHEPSVSGGTGADDKEEEEEETPTSAQPQGVACAASSASAVSSSCSSSASASAATPGADVDWPGLFEVDAILDIDWAGLLSACGDDGGCSAIGVDMLFDQCSDVGFDQDVWM |
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| Function | Transcription factor MYB20 [UniProtKB/Swiss-Prot:Q9C7U7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0732600 | Os02t0732600-01 | Chr02 | 30539853 | 30541113 | - | irgsp1_rep | ||
| CDS seq | ATGGGCAGGCAGCCGTGCTGCGAGAAGGTTGGCCTGAAGAAGGGGCCATGGACGGCCGACGAGGACCAGAAGCTGGTCACCTTCCTCCTCTCCAATGGCCACTGCTGCTGGAGGCTCGTCCCCAAGCTCGCAGGGCTGCTCAGGTGTGGGAAGAGCTGCCGGCTGAGGTGGACGAACTACCTGCGGCCCGACCTCAAGAGGGGCCTCCTTTCCGAAGAGGAGGAGAAGCTGGTCATTGACCTCCACGAGCAGCTCGGCAACAGATGGTCCAAGATTGCGGCACGGCTCCCCGGGAGGACGGACAACGAGATCAAGAACCACTGGAACACCCACATCAAGAAGAAGCTCAAGAAGATGGGCCTTGATCCCGTCACTCACCGGCCGGTGATGTCACTCGCTCAGCCTGATCCCCTGAAGCAGCAGCAGCAGCAGCATGAACCGTCCGTCTCCGGCGGCACCGGTGCCGACGACAAGGAGGAGGAGGAGGAGGAGACGCCGACGAGCGCCCAGCCACAGGGCGTCGCTTGCGCTGCTTCATCCGCCTCCGCCGTGTCGTCGTCATGCTCCTCGTCCGCCTCGGCCTCCGCCGCGACACCCGGCGCGGACGTGGACTGGCCCGGCCTCTTCGAGGTGGATGCCATTCTTGACATTGACTGGGCTGGCTTATTGTCTGCCTGCGGCGACGATGGCGGCTGCAGCGCCATTGGCGTCGATATGTTGTTCGACCAATGCTCTGACGTTGGCTTTGATCAAGATGTGTGGATGTGA
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| Protein seq | MGRQPCCEKVGLKKGPWTADEDQKLVTFLLSNGHCCWRLVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEEEEKLVIDLHEQLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLKKMGLDPVTHRPVMSLAQPDPLKQQQQQHEPSVSGGTGADDKEEEEEETPTSAQPQGVACAASSASAVSSSCSSSASASAATPGADVDWPGLFEVDAILDIDWAGLLSACGDDGGCSAIGVDMLFDQCSDVGFDQDVWM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0732600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49986 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0258000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032510 | RBH | 0.514063 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0032490 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0032090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0032210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0500100 | RBH | 1.6896025 | 0.0318615 | 2.0304715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031980 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0393200 | SBH | 2.8526355 | 0.1733915 | 4.5418915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0032290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0032040 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0032400 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0032250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G032550 | RBH | 0.0 | 0.0 | 0.321125 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0032290 | RBH | 0.0 | 0.0 | 0.0 |
